Wall clock time and date at job start Tue Mar 31 2020 21:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.51159 * 2 1 4 4 C 1.53283 * 109.51470 * 239.85140 * 2 1 3 5 5 N 1.47159 * 108.53699 * 187.01351 * 4 2 1 6 6 C 1.34782 * 121.07839 * 231.28120 * 5 4 2 7 7 O 1.21281 * 120.00095 * 179.97438 * 6 5 4 8 8 C 1.50701 * 119.99843 * 0.02562 * 6 5 4 9 9 C 1.52995 * 109.47266 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47013 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.47074 * 180.02562 * 10 9 8 12 12 C 1.53001 * 117.50040 * 243.62707 * 11 10 9 13 13 C 1.52996 * 117.50177 * 175.00432 * 11 10 9 14 14 C 1.47324 * 117.85168 * 51.27974 * 5 4 2 15 15 C 1.52360 * 108.45549 * 310.87149 * 14 5 4 16 16 C 1.54363 * 110.41297 * 286.35232 * 15 14 5 17 17 C 1.54457 * 102.87666 * 207.62384 * 16 15 14 18 18 N 1.47075 * 107.29916 * 21.49661 * 17 16 15 19 19 C 1.36935 * 125.63452 * 180.97525 * 18 17 16 20 20 H 1.08001 * 120.00601 * 180.02562 * 19 18 17 21 21 C 1.38813 * 119.99956 * 0.02562 * 19 18 17 22 22 N 1.31621 * 119.99918 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00366 * 180.02562 * 21 19 18 24 24 H 1.48510 * 109.46858 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47592 * 119.99902 * 23 21 19 26 26 H 1.48503 * 109.47138 * 240.00274 * 23 21 19 27 27 C 1.47571 * 108.73934 * 0.99453 * 18 17 16 28 28 O 1.41880 * 111.47832 * 49.89946 * 15 14 5 29 29 H 1.09002 * 109.47153 * 299.89434 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.89624 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.89606 * 1 2 3 32 32 H 1.09002 * 109.62373 * 306.72978 * 4 2 1 33 33 H 1.09006 * 109.62669 * 67.29701 * 4 2 1 34 34 H 1.09002 * 109.46493 * 300.00102 * 8 6 5 35 35 H 1.09002 * 109.47133 * 59.99117 * 8 6 5 36 36 H 1.08995 * 109.47418 * 299.99929 * 9 8 6 37 37 H 1.09006 * 109.47044 * 59.99764 * 9 8 6 38 38 H 1.09000 * 109.47428 * 299.99935 * 10 9 8 39 39 H 1.08993 * 109.47045 * 60.00509 * 10 9 8 40 40 H 1.08997 * 115.55245 * 29.32520 * 11 10 9 41 41 H 1.09001 * 117.49584 * 359.97438 * 12 11 10 42 42 H 1.09001 * 117.50360 * 145.01920 * 12 11 10 43 43 H 1.09002 * 117.50215 * 214.97676 * 13 11 10 44 44 H 1.09005 * 117.49886 * 359.97438 * 13 11 10 45 45 H 1.09002 * 109.64302 * 191.17815 * 14 5 4 46 46 H 1.09006 * 109.80917 * 70.65959 * 14 5 4 47 47 H 1.08999 * 110.73087 * 325.97713 * 16 15 14 48 48 H 1.09000 * 110.73151 * 89.27476 * 16 15 14 49 49 H 1.09002 * 109.88022 * 262.06408 * 17 16 15 50 50 H 1.09006 * 110.00033 * 140.99203 * 17 16 15 51 51 H 0.97000 * 120.00358 * 180.02562 * 22 21 19 52 52 H 1.08996 * 110.37784 * 217.85365 * 27 18 17 53 53 H 1.09001 * 110.37789 * 95.50429 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0420 -0.7256 -1.2493 5 7 3.5036 -0.8621 -1.1451 6 6 4.3122 -0.4732 -2.1508 7 8 5.5142 -0.5942 -2.0439 8 6 3.7227 0.1130 -3.4078 9 6 4.8482 0.4685 -4.3813 10 6 4.2496 1.0631 -5.6577 11 6 5.3751 1.4181 -6.6314 12 6 5.5572 2.8935 -6.9931 13 6 4.9755 1.9202 -8.0203 14 6 4.0544 -1.4375 0.0942 15 6 3.4215 -0.7219 1.2811 16 6 4.0043 0.7002 1.4257 17 6 3.8574 0.9804 2.9375 18 7 3.7484 -0.3206 3.6148 19 6 3.5852 -0.5077 4.9615 20 1 3.5159 -1.5077 5.3633 21 6 3.5090 0.5881 5.8103 22 7 3.5929 1.8069 5.3206 23 14 3.2871 0.3329 7.6474 24 1 3.2205 -1.1214 7.9407 25 1 4.4358 0.9326 8.3728 26 1 2.0280 0.9846 8.0892 27 6 3.8443 -1.3911 2.6036 28 8 2.0081 -0.6766 1.1670 29 1 -0.3633 0.5122 0.8909 30 1 -0.3633 -1.0277 -0.0019 31 1 -0.3634 0.5155 -0.8891 32 1 1.5856 -1.7135 -1.3118 33 1 1.7908 -0.1464 -2.1379 34 1 3.0576 -0.6158 -3.8713 35 1 3.1594 1.0126 -3.1598 36 1 5.5129 1.1973 -3.9176 37 1 5.4117 -0.4310 -4.6293 38 1 3.5852 0.3339 -6.1213 39 1 3.6860 1.9624 -5.4099 40 1 6.2722 0.8035 -6.5573 41 1 4.8748 3.6112 -6.5377 42 1 6.5742 3.2499 -7.1570 43 1 5.6099 1.6361 -8.8600 44 1 3.9107 1.9972 -8.2405 45 1 5.1351 -1.2963 0.1150 46 1 3.8231 -2.5016 0.1422 47 1 5.0532 0.7192 1.1297 48 1 3.4248 1.4158 0.8424 49 1 2.9586 1.5696 3.1196 50 1 4.7326 1.5169 3.3040 51 1 3.5400 2.5726 5.9137 52 1 3.1656 -2.2076 2.8498 53 1 4.8690 -1.7562 2.5335 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131674159.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:12 Heat of formation + Delta-G solvation = -53.182142 kcal Electronic energy + Delta-G solvation = -30399.018859 eV Core-core repulsion = 26464.206502 eV Total energy + Delta-G solvation = -3934.812358 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.82911 -40.13392 -38.53846 -37.95118 -35.78060 -34.98352 -34.55063 -32.91481 -31.17303 -30.35165 -29.00076 -27.58366 -26.94910 -25.44316 -23.29774 -23.13289 -22.96990 -22.05312 -21.33523 -20.83811 -19.90758 -18.97298 -18.18104 -17.90711 -17.05561 -16.94147 -16.75910 -16.33042 -16.04192 -15.72202 -15.49119 -15.40280 -15.12914 -15.00635 -14.58406 -14.19236 -14.05993 -13.79945 -13.60046 -13.34042 -13.16523 -13.10041 -13.00983 -12.83375 -12.79843 -12.78635 -12.59675 -12.34078 -12.22811 -12.07559 -11.98711 -11.91285 -11.87452 -11.75004 -11.72261 -11.48873 -11.08681 -10.90312 -10.75132 -10.73034 -10.66938 -9.51720 -8.93144 -7.86157 -5.22072 1.44427 1.46239 1.56704 1.60649 1.86317 2.47928 2.63100 2.95257 3.32212 3.40189 3.52436 3.59454 3.74316 3.84120 3.90558 3.94252 4.03507 4.08557 4.08932 4.19913 4.22299 4.24766 4.38197 4.41573 4.44979 4.48629 4.62660 4.71843 4.73876 4.75683 4.77151 4.80999 4.82480 4.85072 4.90835 4.93713 4.95235 5.05413 5.11554 5.12549 5.27602 5.28334 5.30203 5.36278 5.38943 5.41710 5.52982 5.56147 5.68641 6.15553 6.36162 6.41448 7.07118 7.13374 7.73462 8.38594 9.25026 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019729 B = 0.002365 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.857666 B =11836.536380 C =12225.274542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.056 3.944 3 H 0.052 0.948 4 C 0.083 3.917 5 N -0.614 5.614 6 C 0.509 3.491 7 O -0.586 6.586 8 C -0.131 4.131 9 C -0.097 4.097 10 C -0.080 4.080 11 C -0.165 4.165 12 C -0.191 4.191 13 C -0.176 4.176 14 C 0.106 3.894 15 C 0.111 3.889 16 C -0.149 4.149 17 C 0.198 3.802 18 N -0.621 5.621 19 C -0.238 4.238 20 H 0.085 0.915 21 C -0.071 4.071 22 N -0.954 5.954 23 Si 0.983 3.017 24 H -0.263 1.263 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.145 3.855 28 O -0.372 6.372 29 H 0.045 0.955 30 H 0.071 0.929 31 H 0.108 0.892 32 H 0.094 0.906 33 H 0.133 0.867 34 H 0.126 0.874 35 H 0.115 0.885 36 H 0.047 0.953 37 H 0.055 0.945 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.103 0.897 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.065 0.935 48 H 0.074 0.926 49 H 0.008 0.992 50 H 0.003 0.997 51 H 0.246 0.754 52 H 0.053 0.947 53 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.564 -2.918 -27.223 27.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.001 4.001 3 H 0.070 0.930 4 C -0.039 4.039 5 N -0.347 5.347 6 C 0.299 3.701 7 O -0.466 6.466 8 C -0.170 4.170 9 C -0.135 4.135 10 C -0.117 4.117 11 C -0.183 4.183 12 C -0.228 4.228 13 C -0.213 4.213 14 C -0.018 4.018 15 C 0.070 3.930 16 C -0.187 4.187 17 C 0.073 3.927 18 N -0.347 5.347 19 C -0.367 4.367 20 H 0.103 0.897 21 C -0.263 4.263 22 N -0.604 5.604 23 Si 0.811 3.189 24 H -0.187 1.187 25 H -0.219 1.219 26 H -0.219 1.219 27 C 0.019 3.981 28 O -0.291 6.291 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.127 0.873 32 H 0.113 0.887 33 H 0.151 0.849 34 H 0.144 0.856 35 H 0.133 0.867 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.108 0.892 43 H 0.114 0.886 44 H 0.122 0.878 45 H 0.103 0.897 46 H 0.105 0.895 47 H 0.084 0.916 48 H 0.093 0.907 49 H 0.027 0.973 50 H 0.022 0.978 51 H 0.055 0.945 52 H 0.071 0.929 53 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.079 -2.967 -26.864 27.501 hybrid contribution 0.560 0.477 1.527 1.695 sum -4.519 -2.490 -25.337 25.857 Atomic orbital electron populations 1.21716 0.90362 1.03720 1.03454 1.22812 0.96961 0.95389 0.84980 0.92994 1.22719 0.78120 1.03318 0.99699 1.48332 1.08112 1.62340 1.15929 1.21564 0.86248 0.76686 0.85554 1.90685 1.16907 1.57100 1.81942 1.21790 1.00298 1.03569 0.91383 1.21251 0.96814 1.00686 0.94778 1.21139 0.96142 1.01401 0.93044 1.22396 1.01086 0.97309 0.97550 1.23115 1.02459 0.92794 1.04385 1.23037 1.02179 1.03622 0.92445 1.21818 0.99404 0.97846 0.82756 1.22037 0.81851 0.94564 0.94569 1.23149 1.00469 0.97803 0.97279 1.20752 0.97119 0.87144 0.87670 1.44717 1.85702 1.01651 1.02644 1.19522 1.41756 0.93300 0.82095 0.89671 1.25716 1.02709 0.95076 1.02836 1.70213 1.58230 0.97581 1.34331 0.84944 0.76692 0.77924 0.79372 1.18733 1.21938 1.21896 1.21544 0.98167 0.91741 0.86645 1.87876 1.19433 1.77277 1.44513 0.93562 0.90978 0.87338 0.88748 0.84918 0.85621 0.86654 0.93419 0.92604 0.89931 0.90819 0.88736 0.88394 0.89165 0.88587 0.87819 0.89706 0.89494 0.91650 0.90725 0.97335 0.97842 0.94485 0.92874 0.93605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.57 71.98 0.69 -1.81 16 2 C 0.06 1.36 3.20 30.69 0.10 1.46 16 3 H 0.05 1.38 6.24 -2.39 -0.01 1.37 16 4 C 0.08 1.40 5.81 86.35 0.50 1.90 16 5 N -0.61 -14.68 2.95 -818.67 -2.42 -17.09 16 6 C 0.51 12.47 7.71 87.66 0.68 13.15 16 7 O -0.59 -19.88 15.47 -3.03 -0.05 -19.93 16 8 C -0.13 -1.83 4.07 29.85 0.12 -1.71 16 9 C -0.10 -1.59 4.46 30.59 0.14 -1.45 16 10 C -0.08 -0.91 5.50 30.59 0.17 -0.74 16 11 C -0.17 -2.21 5.74 -10.79 -0.06 -2.27 16 12 C -0.19 -2.45 10.18 30.59 0.31 -2.14 16 13 C -0.18 -1.94 10.25 30.59 0.31 -1.62 16 14 C 0.11 3.15 5.30 86.01 0.46 3.60 16 15 C 0.11 4.04 0.84 -10.16 -0.01 4.03 16 16 C -0.15 -6.05 5.88 31.55 0.19 -5.86 16 17 C 0.20 10.55 5.39 86.76 0.47 11.02 16 18 N -0.62 -33.74 3.40 -692.76 -2.36 -36.09 16 19 C -0.24 -13.89 10.28 84.03 0.86 -13.03 16 20 H 0.09 4.72 7.83 -2.91 -0.02 4.70 16 21 C -0.07 -4.20 5.49 84.86 0.47 -3.73 16 22 N -0.95 -59.82 10.31 21.65 0.22 -59.59 16 23 Si 0.98 47.30 29.55 68.60 2.03 49.33 16 24 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 25 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 26 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 27 C 0.14 6.23 6.42 86.56 0.56 6.79 16 28 O -0.37 -13.08 9.92 -148.95 -1.48 -14.56 16 29 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.13 1.13 6.05 -2.38 -0.01 1.11 16 34 H 0.13 0.98 8.01 -2.39 -0.02 0.96 16 35 H 0.12 1.16 7.67 -2.39 -0.02 1.14 16 36 H 0.05 1.01 8.10 -2.39 -0.02 0.99 16 37 H 0.06 1.07 8.10 -2.38 -0.02 1.05 16 38 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.07 0.72 7.88 -2.39 -0.02 0.70 16 40 H 0.09 1.43 8.07 -2.39 -0.02 1.41 16 41 H 0.10 1.16 8.03 -2.39 -0.02 1.14 16 42 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 45 H 0.08 2.84 6.85 -2.39 -0.02 2.82 16 46 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 47 H 0.06 2.64 7.82 -2.39 -0.02 2.62 16 48 H 0.07 2.80 6.09 -2.39 -0.01 2.79 16 49 H 0.01 0.50 7.38 -2.39 -0.02 0.49 16 50 H 0.00 0.20 7.49 -2.38 -0.02 0.18 16 51 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 52 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 53 H 0.05 1.89 7.99 -2.39 -0.02 1.87 16 Total: -1.00 -78.40 408.35 2.76 -75.64 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.87 Total: 14.71 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 5.94 Total: 7.59 kcal Atomic # 7 Polarization: -108.23 SS G_CDS: -4.55 Total: -112.78 kcal Atomic # 8 Polarization: -32.96 SS G_CDS: -1.52 Total: -34.49 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -78.40 2.76 -75.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131674159.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.456 kcal (2) G-P(sol) polarization free energy of solvation -78.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds