Wall clock time and date at job start Tue Mar 31 2020 21:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.50869 * 2 1 4 4 C 1.53278 * 109.55839 * 120.12864 * 2 1 3 5 5 N 1.47167 * 108.52211 * 173.02945 * 4 2 1 6 6 C 1.34778 * 121.07759 * 128.67598 * 5 4 2 7 7 O 1.21283 * 120.00355 * 180.02562 * 6 5 4 8 8 C 1.50703 * 119.99882 * 359.97438 * 6 5 4 9 9 C 1.53003 * 109.46846 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.46935 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.47223 * 179.97438 * 10 9 8 12 12 C 1.52999 * 117.49940 * 243.62175 * 11 10 9 13 13 C 1.53004 * 60.00150 * 252.50897 * 12 11 10 14 14 C 1.47326 * 117.84567 * 308.69353 * 5 4 2 15 15 C 1.52357 * 108.46342 * 49.13614 * 14 5 4 16 16 C 1.54359 * 110.41767 * 73.70396 * 15 14 5 17 17 C 1.54467 * 102.87849 * 152.35242 * 16 15 14 18 18 N 1.47081 * 107.29562 * 338.51115 * 17 16 15 19 19 C 1.36948 * 125.62908 * 178.95984 * 18 17 16 20 20 H 1.07999 * 119.99813 * 174.85374 * 19 18 17 21 21 C 1.38806 * 119.99889 * 354.85841 * 19 18 17 22 22 N 1.31615 * 120.00248 * 7.06067 * 21 19 18 23 23 Si 1.86798 * 119.99956 * 187.05884 * 21 19 18 24 24 H 1.48503 * 109.47004 * 94.98452 * 23 21 19 25 25 H 1.48501 * 109.47395 * 214.98505 * 23 21 19 26 26 H 1.48497 * 109.47232 * 334.98858 * 23 21 19 27 27 C 1.47563 * 108.74095 * 358.99204 * 18 17 16 28 28 O 1.41872 * 111.48210 * 310.13044 * 15 14 5 29 29 H 1.09004 * 109.46821 * 180.10261 * 1 2 3 30 30 H 1.09004 * 109.47296 * 300.09091 * 1 2 3 31 31 H 1.09001 * 109.47870 * 60.09779 * 1 2 3 32 32 H 1.09000 * 109.62986 * 292.74614 * 4 2 1 33 33 H 1.09001 * 109.62890 * 53.31679 * 4 2 1 34 34 H 1.08990 * 109.47365 * 300.00391 * 8 6 5 35 35 H 1.09004 * 109.47045 * 60.00719 * 8 6 5 36 36 H 1.09002 * 109.46865 * 299.99816 * 9 8 6 37 37 H 1.08997 * 109.47444 * 60.00273 * 9 8 6 38 38 H 1.09002 * 109.46800 * 300.00210 * 10 9 8 39 39 H 1.08997 * 109.47137 * 59.99712 * 10 9 8 40 40 H 1.09001 * 115.55342 * 29.32844 * 11 10 9 41 41 H 1.09001 * 117.50013 * 359.97438 * 12 11 10 42 42 H 1.09003 * 117.50038 * 145.01844 * 12 11 10 43 43 H 1.08999 * 117.49894 * 252.51160 * 13 12 11 44 44 H 1.09000 * 117.49612 * 107.48550 * 13 12 11 45 45 H 1.08994 * 109.63546 * 289.43583 * 14 5 4 46 46 H 1.09001 * 109.63564 * 168.83073 * 14 5 4 47 47 H 1.08997 * 110.73534 * 34.00711 * 16 15 14 48 48 H 1.08996 * 110.72769 * 270.69756 * 16 15 14 49 49 H 1.08999 * 109.87937 * 219.08816 * 17 16 15 50 50 H 1.09001 * 109.87800 * 97.93422 * 17 16 15 51 51 H 0.97001 * 120.00307 * 180.02562 * 22 21 19 52 52 H 1.09006 * 110.37586 * 142.15091 * 27 18 17 53 53 H 1.08996 * 110.37855 * 264.38729 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0431 -0.7250 1.2492 5 7 3.5048 -0.8598 1.1442 6 6 4.3135 -0.4692 2.1491 7 8 5.5156 -0.5888 2.0416 8 6 3.7241 0.1173 3.4060 9 6 4.8499 0.4750 4.3784 10 6 4.2515 1.0699 5.6547 11 6 5.3771 1.4270 6.6275 12 6 5.4222 0.6786 7.9612 13 6 4.9910 2.1461 7.9216 14 6 4.0555 -1.4353 -0.0952 15 6 3.4213 -0.7210 -1.2822 16 6 4.0035 0.7010 -1.4288 17 6 3.8555 0.9794 -2.9409 18 7 3.7463 -0.3224 -3.6166 19 6 3.5811 -0.5111 -4.9629 20 1 3.5947 -1.5097 -5.3739 21 6 3.3962 0.5812 -5.7993 22 7 3.5178 1.8023 -5.3236 23 14 2.9749 0.3180 -7.6000 24 1 1.5020 0.3808 -7.7780 25 1 3.6181 1.3769 -8.4188 26 1 3.4697 -1.0129 -8.0347 27 6 3.8434 -1.3916 -2.6043 28 8 2.0079 -0.6764 -1.1671 29 1 -0.3633 -1.0277 0.0018 30 1 -0.3634 0.5153 0.8892 31 1 -0.3635 0.5123 -0.8908 32 1 1.7916 -0.1460 2.1378 33 1 1.5877 -1.7133 1.3119 34 1 3.1598 1.0160 3.1576 35 1 3.0602 -0.6118 3.8706 36 1 5.4145 -0.4237 4.6269 37 1 5.5135 1.2042 3.9138 38 1 3.6865 1.9684 5.4065 39 1 3.5881 0.3403 6.1193 40 1 6.3286 1.6945 6.1678 41 1 4.6497 -0.0679 8.1458 42 1 6.4035 0.4535 8.3791 43 1 5.6885 2.8864 8.3134 44 1 3.9349 2.3647 8.0799 45 1 3.8223 -2.4990 -0.1403 46 1 5.1360 -1.2930 -0.1166 47 1 5.0526 0.7208 -1.1337 48 1 3.4240 1.4171 -0.8461 49 1 4.7318 1.5145 -3.3068 50 1 2.9565 1.5682 -3.1232 51 1 3.3882 2.5657 -5.9079 52 1 3.1647 -2.2087 -2.8490 53 1 4.8678 -1.7577 -2.5359 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131674162.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:20 Heat of formation + Delta-G solvation = -53.142737 kcal Electronic energy + Delta-G solvation = -30385.195683 eV Core-core repulsion = 26450.385034 eV Total energy + Delta-G solvation = -3934.810649 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.82891 -40.13278 -38.53700 -37.94878 -35.78055 -34.98230 -34.55000 -32.91924 -31.17288 -30.35068 -29.00043 -27.58465 -26.94812 -25.44080 -23.29267 -23.13372 -22.96995 -22.05114 -21.33498 -20.83833 -19.90866 -18.96506 -18.18281 -17.90847 -17.08680 -16.89280 -16.71327 -16.38917 -16.07450 -15.68244 -15.56890 -15.25602 -15.16461 -15.04188 -14.59450 -14.19589 -14.05251 -13.80024 -13.61182 -13.37737 -13.13464 -13.06049 -12.98804 -12.86580 -12.81149 -12.78499 -12.59117 -12.33749 -12.23083 -12.06794 -12.01375 -11.90964 -11.87148 -11.76529 -11.72104 -11.49034 -11.08479 -10.89839 -10.73981 -10.70812 -10.67446 -9.51632 -8.92738 -7.87361 -5.21932 1.44314 1.47214 1.55944 1.60661 1.86339 2.48038 2.63166 2.95526 3.30528 3.40666 3.52454 3.59858 3.74205 3.84007 3.90674 3.94437 4.06032 4.06706 4.08968 4.20430 4.22048 4.24375 4.38060 4.41128 4.45868 4.49973 4.62096 4.70339 4.73874 4.75588 4.78090 4.81173 4.82613 4.85121 4.90661 4.93637 4.95723 5.05316 5.11802 5.12555 5.27436 5.28838 5.30865 5.36472 5.38323 5.41362 5.52962 5.56596 5.68195 6.15520 6.36195 6.41758 7.06870 7.13373 7.73461 8.39032 9.24216 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.021807 B = 0.002322 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.708616 B =12054.769419 C =12391.502641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.056 3.944 3 H 0.052 0.948 4 C 0.083 3.917 5 N -0.614 5.614 6 C 0.509 3.491 7 O -0.586 6.586 8 C -0.131 4.131 9 C -0.097 4.097 10 C -0.080 4.080 11 C -0.167 4.167 12 C -0.184 4.184 13 C -0.180 4.180 14 C 0.106 3.894 15 C 0.112 3.888 16 C -0.149 4.149 17 C 0.197 3.803 18 N -0.621 5.621 19 C -0.240 4.240 20 H 0.085 0.915 21 C -0.068 4.068 22 N -0.952 5.952 23 Si 0.981 3.019 24 H -0.287 1.287 25 H -0.295 1.295 26 H -0.265 1.265 27 C 0.145 3.855 28 O -0.372 6.372 29 H 0.071 0.929 30 H 0.108 0.892 31 H 0.045 0.955 32 H 0.133 0.867 33 H 0.094 0.906 34 H 0.116 0.884 35 H 0.125 0.875 36 H 0.054 0.946 37 H 0.048 0.952 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.103 0.897 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.065 0.935 48 H 0.074 0.926 49 H 0.001 0.999 50 H 0.011 0.989 51 H 0.246 0.754 52 H 0.053 0.947 53 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.496 -3.226 27.404 28.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.001 4.001 3 H 0.070 0.930 4 C -0.039 4.039 5 N -0.347 5.347 6 C 0.300 3.700 7 O -0.466 6.466 8 C -0.170 4.170 9 C -0.135 4.135 10 C -0.117 4.117 11 C -0.186 4.186 12 C -0.221 4.221 13 C -0.217 4.217 14 C -0.018 4.018 15 C 0.070 3.930 16 C -0.187 4.187 17 C 0.072 3.928 18 N -0.347 5.347 19 C -0.369 4.369 20 H 0.103 0.897 21 C -0.261 4.261 22 N -0.601 5.601 23 Si 0.809 3.191 24 H -0.214 1.214 25 H -0.222 1.222 26 H -0.190 1.190 27 C 0.019 3.981 28 O -0.291 6.291 29 H 0.090 0.910 30 H 0.127 0.873 31 H 0.064 0.936 32 H 0.151 0.849 33 H 0.112 0.888 34 H 0.134 0.866 35 H 0.143 0.857 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.110 0.890 41 H 0.120 0.880 42 H 0.109 0.891 43 H 0.112 0.888 44 H 0.121 0.879 45 H 0.105 0.895 46 H 0.103 0.897 47 H 0.084 0.916 48 H 0.093 0.907 49 H 0.019 0.981 50 H 0.029 0.971 51 H 0.056 0.944 52 H 0.071 0.929 53 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.008 -3.268 27.045 27.698 hybrid contribution 0.478 0.440 -1.507 1.641 sum -4.530 -2.829 25.537 26.090 Atomic orbital electron populations 1.21714 0.90374 1.03713 1.03451 1.22809 0.96949 0.95401 0.84976 0.92984 1.22716 0.78114 1.03321 0.99703 1.48339 1.08100 1.62324 1.15964 1.21561 0.86250 0.76686 0.85552 1.90685 1.16902 1.57134 1.81918 1.21790 1.00291 1.03577 0.91382 1.21251 0.96811 1.00788 0.94671 1.21135 0.96096 1.01210 0.93257 1.22389 1.00692 1.05541 0.89935 1.23115 1.03158 0.95370 1.00474 1.23040 1.02656 0.95158 1.00807 1.21829 0.99400 0.97831 0.82755 1.22028 0.81852 0.94571 0.94545 1.23149 1.00478 0.97804 0.97265 1.20764 0.97077 0.87189 0.87738 1.44708 1.85780 1.01639 1.02593 1.19473 1.41501 0.93516 0.82428 0.89717 1.25717 1.02466 0.95057 1.02876 1.70210 1.56617 0.97640 1.35638 0.85021 0.77585 0.77354 0.79156 1.21389 1.22154 1.18985 1.21544 0.98149 0.91772 0.86637 1.87873 1.19442 1.77273 1.44506 0.90992 0.87330 0.93574 0.84909 0.88768 0.86573 0.85704 0.92724 0.93318 0.90496 0.90271 0.89011 0.88008 0.89076 0.88799 0.87854 0.89515 0.89676 0.91628 0.90718 0.98053 0.97115 0.94439 0.92874 0.93649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.57 71.98 0.69 -1.82 16 2 C 0.06 1.37 3.20 30.69 0.10 1.46 16 3 H 0.05 1.38 6.25 -2.39 -0.01 1.37 16 4 C 0.08 1.40 5.82 86.35 0.50 1.91 16 5 N -0.61 -14.69 2.95 -818.69 -2.42 -17.10 16 6 C 0.51 12.47 7.71 87.66 0.68 13.15 16 7 O -0.59 -19.88 15.47 -3.04 -0.05 -19.93 16 8 C -0.13 -1.83 4.07 29.85 0.12 -1.71 16 9 C -0.10 -1.59 4.46 30.59 0.14 -1.46 16 10 C -0.08 -0.90 5.50 30.59 0.17 -0.74 16 11 C -0.17 -2.25 5.74 -10.79 -0.06 -2.31 16 12 C -0.18 -2.17 10.18 30.60 0.31 -1.86 16 13 C -0.18 -2.01 10.25 30.60 0.31 -1.69 16 14 C 0.11 3.15 5.30 86.01 0.46 3.61 16 15 C 0.11 4.05 0.84 -10.16 -0.01 4.04 16 16 C -0.15 -6.04 5.88 31.55 0.19 -5.85 16 17 C 0.20 10.50 5.39 86.77 0.47 10.96 16 18 N -0.62 -33.73 3.40 -692.72 -2.36 -36.09 16 19 C -0.24 -14.04 10.27 84.03 0.86 -13.18 16 20 H 0.09 4.70 7.84 -2.91 -0.02 4.67 16 21 C -0.07 -4.05 5.48 84.86 0.46 -3.58 16 22 N -0.95 -59.61 10.36 21.65 0.22 -59.39 16 23 Si 0.98 47.23 29.56 68.60 2.03 49.26 16 24 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 25 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 26 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 27 C 0.14 6.23 6.41 86.56 0.56 6.79 16 28 O -0.37 -13.10 9.92 -148.95 -1.48 -14.58 16 29 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.13 1.13 6.05 -2.39 -0.01 1.12 16 33 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.12 1.15 7.67 -2.39 -0.02 1.14 16 35 H 0.12 0.98 8.00 -2.39 -0.02 0.97 16 36 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 37 H 0.05 1.01 8.10 -2.39 -0.02 0.99 16 38 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.08 0.68 7.87 -2.39 -0.02 0.66 16 40 H 0.09 1.45 8.07 -2.39 -0.02 1.43 16 41 H 0.10 1.01 8.03 -2.39 -0.02 1.00 16 42 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 46 H 0.08 2.84 6.85 -2.39 -0.02 2.83 16 47 H 0.07 2.64 7.82 -2.39 -0.02 2.62 16 48 H 0.07 2.80 6.10 -2.39 -0.01 2.79 16 49 H 0.00 0.08 7.61 -2.39 -0.02 0.06 16 50 H 0.01 0.63 7.30 -2.39 -0.02 0.62 16 51 H 0.25 14.94 8.31 -92.71 -0.77 14.16 16 52 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 53 H 0.05 1.87 8.00 -2.39 -0.02 1.85 16 Total: -1.00 -78.27 408.44 2.76 -75.52 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 0.87 Total: 14.60 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 5.94 Total: 7.72 kcal Atomic # 7 Polarization: -108.03 SS G_CDS: -4.55 Total: -112.58 kcal Atomic # 8 Polarization: -32.98 SS G_CDS: -1.52 Total: -34.51 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -78.27 2.76 -75.52 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131674162.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.375 kcal (2) G-P(sol) polarization free energy of solvation -78.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds