Wall clock time and date at job start Tue Mar 31 2020 21:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50699 * 119.99516 * 2 1 4 4 C 1.53003 * 109.46862 * 125.00009 * 3 2 1 5 5 C 1.52996 * 109.46994 * 59.99928 * 4 3 2 6 6 C 1.52996 * 109.47207 * 299.99826 * 4 3 2 7 7 C 1.50704 * 109.47352 * 179.97438 * 4 3 2 8 8 O 1.21283 * 119.99654 * 8.29193 * 7 4 3 9 9 N 1.34776 * 120.00309 * 188.29740 * 7 4 3 10 10 C 1.47180 * 121.07271 * 354.44384 * 9 7 4 11 11 C 1.53277 * 108.51567 * 231.28697 * 10 9 7 12 12 H 1.09004 * 109.51529 * 66.89436 * 11 10 9 13 13 C 1.53003 * 109.51388 * 186.99449 * 11 10 9 14 14 O 1.43111 * 109.22872 * 306.91966 * 11 10 9 15 15 C 1.41878 * 114.44267 * 60.87037 * 14 11 10 16 16 C 1.54361 * 110.75974 * 63.58918 * 15 14 11 17 17 C 1.54469 * 102.87641 * 83.66905 * 16 15 14 18 18 N 1.47085 * 107.29573 * 21.49056 * 17 16 15 19 19 C 1.36941 * 125.62735 * 180.95880 * 18 17 16 20 20 H 1.08002 * 119.99750 * 180.02562 * 19 18 17 21 21 C 1.38810 * 119.99786 * 0.04503 * 19 18 17 22 22 N 1.31611 * 120.00534 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99615 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46900 * 60.00136 * 23 21 19 25 25 H 1.48494 * 109.47154 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47201 * 300.00045 * 23 21 19 27 27 C 1.47566 * 108.73926 * 0.99966 * 18 17 16 28 28 C 1.47313 * 121.07781 * 174.42748 * 9 7 4 29 29 H 1.08003 * 119.99416 * 179.97438 * 1 2 3 30 30 H 1.07998 * 120.00075 * 359.97438 * 1 2 3 31 31 H 1.07998 * 120.00075 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.47748 * 5.00490 * 3 2 1 33 33 H 1.09002 * 109.47191 * 244.99598 * 3 2 1 34 34 H 1.09003 * 109.47294 * 190.23859 * 5 4 3 35 35 H 1.09003 * 109.47705 * 310.23707 * 5 4 3 36 36 H 1.08994 * 109.47428 * 70.24205 * 5 4 3 37 37 H 1.08997 * 109.47559 * 311.16898 * 6 4 3 38 38 H 1.09003 * 109.47241 * 71.16688 * 6 4 3 39 39 H 1.08999 * 109.47217 * 191.16704 * 6 4 3 40 40 H 1.08997 * 109.62587 * 111.58145 * 10 9 7 41 41 H 1.08996 * 109.79052 * 351.09572 * 10 9 7 42 42 H 1.09001 * 109.46862 * 59.99936 * 13 11 10 43 43 H 1.09001 * 109.46689 * 300.00684 * 13 11 10 44 44 H 1.08999 * 109.47553 * 180.02562 * 13 11 10 45 45 H 1.08998 * 110.73204 * 202.01369 * 16 15 14 46 46 H 1.08996 * 110.73227 * 325.32715 * 16 15 14 47 47 H 1.08997 * 109.87682 * 262.06288 * 17 16 15 48 48 H 1.08997 * 109.99797 * 140.98453 * 17 16 15 49 49 H 0.97004 * 120.00539 * 180.02562 * 22 21 19 50 50 H 1.09003 * 110.37549 * 217.85758 * 27 18 17 51 51 H 1.09004 * 110.47199 * 95.56018 * 27 18 17 52 52 H 1.09004 * 109.63324 * 250.57719 * 28 9 7 53 53 H 1.08998 * 109.63649 * 11.18636 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1817 5 6 4.0245 0.1730 1.0559 6 6 2.2520 1.1963 2.4890 7 6 3.7889 2.6381 1.1814 8 8 3.4686 3.5232 0.4167 9 7 4.8191 2.8214 2.0309 10 6 5.1517 1.8132 3.0502 11 6 5.2528 2.5116 4.4109 12 1 4.2690 2.8759 4.7071 13 6 5.7671 1.5207 5.4571 14 8 6.1606 3.6132 4.3089 15 6 5.7729 4.6090 3.3756 16 6 4.4483 5.2752 3.8048 17 6 4.9141 6.3514 4.8101 18 7 6.3324 6.6248 4.5322 19 6 7.1239 7.5074 5.2176 20 1 8.1580 7.6376 4.9346 21 6 6.5971 8.2345 6.2762 22 7 5.3368 8.0760 6.6209 23 14 7.6770 9.4380 7.2116 24 1 8.1828 10.4773 6.2790 25 1 6.8823 10.0834 8.2872 26 1 8.8242 8.7107 7.8115 27 6 6.7612 5.7916 3.3922 28 6 5.6487 4.0371 1.9689 29 1 -0.5399 -0.9354 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 1.3585 2.1317 0.0896 33 1 2.6213 1.4027 -0.9314 34 1 4.5962 0.0814 1.9794 35 1 3.4782 -0.7524 0.8734 36 1 4.7041 0.3636 0.2254 37 1 1.4186 1.8986 2.4887 38 1 1.8701 0.1793 2.5790 39 1 2.9096 1.4132 3.3307 40 1 6.1063 1.3470 2.8062 41 1 4.3715 1.0530 3.0858 42 1 6.7516 1.1583 5.1611 43 1 5.0775 0.6798 5.5309 44 1 5.8383 2.0179 6.4244 45 1 3.9527 5.7347 2.9497 46 1 3.7923 4.5523 4.2898 47 1 4.8008 5.9808 5.8289 48 1 4.3288 7.2616 4.6797 49 1 4.9686 8.5844 7.3605 50 1 7.7791 5.4333 3.5458 51 1 6.6944 6.3552 2.4616 52 1 6.6383 3.7861 1.5869 53 1 5.1758 4.7704 1.3157 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131682925.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:34 Heat of formation + Delta-G solvation = -13.089179 kcal Electronic energy + Delta-G solvation = -31849.416327 eV Core-core repulsion = 27916.342531 eV Total energy + Delta-G solvation = -3933.073796 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.09073 -39.21684 -36.81246 -36.37518 -34.75970 -33.34610 -32.64839 -31.32440 -29.31326 -28.50314 -27.70936 -27.23282 -26.33696 -25.73188 -23.91784 -22.39819 -21.82136 -20.18460 -19.89996 -19.09286 -18.85661 -17.01089 -16.76410 -16.60313 -16.18478 -15.59934 -15.26777 -14.74879 -14.64882 -14.50262 -14.27844 -14.16284 -13.65524 -13.62080 -13.36142 -13.13159 -12.77812 -12.60922 -12.46840 -12.32599 -12.24807 -12.12339 -11.95512 -11.90579 -11.76861 -11.54662 -11.23429 -11.13402 -10.99938 -10.96481 -10.87243 -10.82763 -10.22261 -10.19778 -10.08731 -10.02021 -9.69602 -9.62107 -9.48132 -9.43772 -8.53759 -8.33245 -6.77998 -5.65296 -2.98444 2.00921 2.59430 2.88041 3.44677 3.48323 3.49789 3.87035 4.16293 4.43530 4.52958 4.57461 4.69143 4.83792 4.85275 4.88920 4.92559 5.04893 5.13428 5.19770 5.24768 5.33895 5.40654 5.43621 5.49283 5.52030 5.53597 5.57822 5.60073 5.61790 5.72684 5.78084 5.82880 5.84327 5.94263 5.94903 5.96394 6.03346 6.17517 6.19290 6.36145 6.39437 6.51567 6.52008 6.54449 6.57488 6.67749 7.36223 7.59563 7.67398 7.70950 7.88011 8.13508 8.30458 9.26919 9.87000 10.52904 11.46513 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.021924 B = 0.002961 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.821955 B = 9452.943633 C = 9761.828779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.149 4.149 3 C -0.070 4.070 4 C -0.075 4.075 5 C -0.160 4.160 6 C -0.151 4.151 7 C 0.526 3.474 8 O -0.538 6.538 9 N -0.607 5.607 10 C 0.059 3.941 11 C 0.067 3.933 12 H 0.064 0.936 13 C -0.142 4.142 14 O -0.343 6.343 15 C 0.094 3.906 16 C -0.164 4.164 17 C 0.186 3.814 18 N -0.599 5.599 19 C -0.225 4.225 20 H 0.078 0.922 21 C -0.009 4.009 22 N -0.923 5.923 23 Si 0.912 3.088 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.285 1.285 27 C 0.153 3.847 28 C 0.096 3.904 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.112 0.888 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.060 0.940 47 H 0.046 0.954 48 H 0.042 0.958 49 H 0.252 0.748 50 H 0.050 0.950 51 H 0.036 0.964 52 H 0.071 0.929 53 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.832 -21.020 -9.966 23.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.167 4.167 3 C -0.107 4.107 4 C -0.078 4.078 5 C -0.216 4.216 6 C -0.208 4.208 7 C 0.314 3.686 8 O -0.415 6.415 9 N -0.340 5.340 10 C -0.063 4.063 11 C 0.008 3.992 12 H 0.082 0.918 13 C -0.200 4.200 14 O -0.262 6.262 15 C 0.052 3.948 16 C -0.202 4.202 17 C 0.061 3.939 18 N -0.325 5.325 19 C -0.353 4.353 20 H 0.095 0.905 21 C -0.205 4.205 22 N -0.570 5.570 23 Si 0.743 3.257 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 C 0.026 3.974 28 C -0.026 4.026 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.127 0.873 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.129 0.871 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.083 0.917 46 H 0.079 0.921 47 H 0.064 0.936 48 H 0.060 0.940 49 H 0.062 0.938 50 H 0.068 0.932 51 H 0.054 0.946 52 H 0.090 0.910 53 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.861 -20.354 -10.084 23.458 hybrid contribution 0.289 0.577 0.439 0.780 sum -5.571 -19.777 -9.645 22.698 Atomic orbital electron populations 1.23870 0.95957 1.01826 1.01432 1.22954 0.95945 0.98240 0.99588 1.20590 0.97481 0.95647 0.97028 1.20694 0.95977 0.93194 0.97954 1.22340 0.98781 0.97196 1.03332 1.22109 1.00465 1.03140 0.95077 1.20527 0.79470 0.88934 0.79715 1.90689 1.66151 1.44143 1.40519 1.48085 1.31283 1.20741 1.33853 1.23141 1.02633 0.91941 0.88626 1.22480 0.94898 0.88206 0.93616 0.91773 1.21700 1.01651 0.97560 0.99041 1.87910 1.46582 1.30639 1.61072 1.22380 0.97301 0.88519 0.86575 1.23341 0.96100 0.99822 1.00972 1.21096 0.84478 0.93533 0.94766 1.44408 1.07839 1.46184 1.34083 1.19000 0.92947 1.13861 1.09477 0.90455 1.24785 0.96435 1.00313 0.98930 1.69956 1.12208 1.44304 1.30576 0.86191 0.79248 0.80854 0.79408 1.21207 1.21675 1.21197 1.21332 0.95644 0.88157 0.92280 1.22153 0.94854 0.87207 0.98417 0.88600 0.88549 0.87253 0.90461 0.90467 0.90666 0.91135 0.92049 0.91678 0.91049 0.91323 0.90650 0.87078 0.91732 0.91333 0.91010 0.91685 0.92148 0.93586 0.93986 0.93799 0.93167 0.94641 0.91037 0.88048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.42 14.32 29.01 0.42 -1.00 16 2 C -0.15 -1.14 7.89 -36.03 -0.28 -1.42 16 3 C -0.07 -0.68 4.03 -27.88 -0.11 -0.80 16 4 C -0.08 -0.73 0.52 -155.66 -0.08 -0.81 16 5 C -0.16 -1.19 7.87 37.16 0.29 -0.90 16 6 C -0.15 -1.32 7.65 37.16 0.28 -1.03 16 7 C 0.53 7.20 6.46 -10.98 -0.07 7.13 16 8 O -0.54 -9.35 15.47 5.55 0.09 -9.27 16 9 N -0.61 -8.12 2.94 -172.70 -0.51 -8.63 16 10 C 0.06 0.64 3.44 -3.53 -0.01 0.63 16 11 C 0.07 0.90 3.15 -26.59 -0.08 0.81 16 12 H 0.06 0.93 6.25 -51.93 -0.32 0.60 16 13 C -0.14 -1.53 9.57 37.16 0.36 -1.18 16 14 O -0.34 -6.22 9.92 -35.22 -0.35 -6.57 16 15 C 0.09 1.72 0.84 -89.65 -0.08 1.64 16 16 C -0.16 -3.28 5.88 -25.25 -0.15 -3.43 16 17 C 0.19 4.71 5.39 -2.95 -0.02 4.69 16 18 N -0.60 -15.76 3.40 -170.30 -0.58 -16.34 16 19 C -0.22 -6.40 10.28 -15.06 -0.15 -6.56 16 20 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 21 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 22 N -0.92 -27.70 10.31 55.49 0.57 -27.13 16 23 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 C 0.15 3.26 6.42 -2.87 -0.02 3.24 16 28 C 0.10 1.50 5.31 -3.93 -0.02 1.48 16 29 H 0.10 0.57 8.06 -52.48 -0.42 0.15 16 30 H 0.10 0.73 7.84 -52.49 -0.41 0.32 16 31 H 0.11 0.68 6.60 -52.49 -0.35 0.34 16 32 H 0.08 0.87 7.66 -51.93 -0.40 0.47 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.50 4.66 -51.93 -0.24 0.26 16 35 H 0.07 0.41 6.11 -51.93 -0.32 0.09 16 36 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 37 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 38 H 0.07 0.49 7.60 -51.93 -0.39 0.10 16 39 H 0.07 0.60 5.23 -51.93 -0.27 0.33 16 40 H 0.08 0.75 8.09 -51.93 -0.42 0.33 16 41 H 0.11 0.93 2.67 -51.93 -0.14 0.79 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.06 1.29 7.82 -51.93 -0.41 0.89 16 46 H 0.06 1.14 6.10 -51.93 -0.32 0.82 16 47 H 0.05 1.30 7.38 -51.93 -0.38 0.91 16 48 H 0.04 1.17 7.49 -51.93 -0.39 0.79 16 49 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 50 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 51 H 0.04 0.73 7.99 -51.93 -0.42 0.32 16 52 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 53 H 0.10 1.71 6.83 -51.93 -0.35 1.35 16 LS Contribution 392.99 15.07 5.92 5.92 Total: -1.00 -33.37 392.99 -8.58 -41.95 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -8.88 Total: 0.41 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: 0.17 Total: 2.15 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: -0.51 Total: -52.10 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -0.26 Total: -15.84 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.37 -8.58 -41.95 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131682925.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.866 kcal (2) G-P(sol) polarization free energy of solvation -33.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds