Wall clock time and date at job start Tue Mar 31 2020 21:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50699 * 119.99516 * 2 1 4 4 C 1.53003 * 109.46862 * 125.00009 * 3 2 1 5 5 C 1.52996 * 109.46994 * 59.99928 * 4 3 2 6 6 C 1.52996 * 109.47207 * 299.99826 * 4 3 2 7 7 C 1.50704 * 109.47352 * 179.97438 * 4 3 2 8 8 O 1.21283 * 119.99654 * 8.29193 * 7 4 3 9 9 N 1.34776 * 120.00309 * 188.29740 * 7 4 3 10 10 C 1.47180 * 121.07271 * 354.44384 * 9 7 4 11 11 C 1.53277 * 108.51567 * 231.28697 * 10 9 7 12 12 H 1.09004 * 109.51529 * 66.89436 * 11 10 9 13 13 C 1.53003 * 109.51388 * 186.99449 * 11 10 9 14 14 O 1.43111 * 109.22872 * 306.91966 * 11 10 9 15 15 C 1.41878 * 114.44267 * 60.87037 * 14 11 10 16 16 C 1.54361 * 110.75974 * 63.58918 * 15 14 11 17 17 C 1.54469 * 102.87641 * 83.66905 * 16 15 14 18 18 N 1.47085 * 107.29573 * 21.49056 * 17 16 15 19 19 C 1.36941 * 125.62735 * 180.95880 * 18 17 16 20 20 H 1.08002 * 119.99750 * 180.02562 * 19 18 17 21 21 C 1.38810 * 119.99786 * 0.04503 * 19 18 17 22 22 N 1.31611 * 120.00534 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99615 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46900 * 60.00136 * 23 21 19 25 25 H 1.48494 * 109.47154 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47201 * 300.00045 * 23 21 19 27 27 C 1.47566 * 108.73926 * 0.99966 * 18 17 16 28 28 C 1.47313 * 121.07781 * 174.42748 * 9 7 4 29 29 H 1.08003 * 119.99416 * 179.97438 * 1 2 3 30 30 H 1.07998 * 120.00075 * 359.97438 * 1 2 3 31 31 H 1.07998 * 120.00075 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.47748 * 5.00490 * 3 2 1 33 33 H 1.09002 * 109.47191 * 244.99598 * 3 2 1 34 34 H 1.09003 * 109.47294 * 190.23859 * 5 4 3 35 35 H 1.09003 * 109.47705 * 310.23707 * 5 4 3 36 36 H 1.08994 * 109.47428 * 70.24205 * 5 4 3 37 37 H 1.08997 * 109.47559 * 311.16898 * 6 4 3 38 38 H 1.09003 * 109.47241 * 71.16688 * 6 4 3 39 39 H 1.08999 * 109.47217 * 191.16704 * 6 4 3 40 40 H 1.08997 * 109.62587 * 111.58145 * 10 9 7 41 41 H 1.08996 * 109.79052 * 351.09572 * 10 9 7 42 42 H 1.09001 * 109.46862 * 59.99936 * 13 11 10 43 43 H 1.09001 * 109.46689 * 300.00684 * 13 11 10 44 44 H 1.08999 * 109.47553 * 180.02562 * 13 11 10 45 45 H 1.08998 * 110.73204 * 202.01369 * 16 15 14 46 46 H 1.08996 * 110.73227 * 325.32715 * 16 15 14 47 47 H 1.08997 * 109.87682 * 262.06288 * 17 16 15 48 48 H 1.08997 * 109.99797 * 140.98453 * 17 16 15 49 49 H 0.97004 * 120.00539 * 180.02562 * 22 21 19 50 50 H 1.09003 * 110.37549 * 217.85758 * 27 18 17 51 51 H 1.09004 * 110.47199 * 95.56018 * 27 18 17 52 52 H 1.09004 * 109.63324 * 250.57719 * 28 9 7 53 53 H 1.08998 * 109.63649 * 11.18636 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1817 5 6 4.0245 0.1730 1.0559 6 6 2.2520 1.1963 2.4890 7 6 3.7889 2.6381 1.1814 8 8 3.4686 3.5232 0.4167 9 7 4.8191 2.8214 2.0309 10 6 5.1517 1.8132 3.0502 11 6 5.2528 2.5116 4.4109 12 1 4.2690 2.8759 4.7071 13 6 5.7671 1.5207 5.4571 14 8 6.1606 3.6132 4.3089 15 6 5.7729 4.6090 3.3756 16 6 4.4483 5.2752 3.8048 17 6 4.9141 6.3514 4.8101 18 7 6.3324 6.6248 4.5322 19 6 7.1239 7.5074 5.2176 20 1 8.1580 7.6376 4.9346 21 6 6.5971 8.2345 6.2762 22 7 5.3368 8.0760 6.6209 23 14 7.6770 9.4380 7.2116 24 1 8.1828 10.4773 6.2790 25 1 6.8823 10.0834 8.2872 26 1 8.8242 8.7107 7.8115 27 6 6.7612 5.7916 3.3922 28 6 5.6487 4.0371 1.9689 29 1 -0.5399 -0.9354 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 1.3585 2.1317 0.0896 33 1 2.6213 1.4027 -0.9314 34 1 4.5962 0.0814 1.9794 35 1 3.4782 -0.7524 0.8734 36 1 4.7041 0.3636 0.2254 37 1 1.4186 1.8986 2.4887 38 1 1.8701 0.1793 2.5790 39 1 2.9096 1.4132 3.3307 40 1 6.1063 1.3470 2.8062 41 1 4.3715 1.0530 3.0858 42 1 6.7516 1.1583 5.1611 43 1 5.0775 0.6798 5.5309 44 1 5.8383 2.0179 6.4244 45 1 3.9527 5.7347 2.9497 46 1 3.7923 4.5523 4.2898 47 1 4.8008 5.9808 5.8289 48 1 4.3288 7.2616 4.6797 49 1 4.9686 8.5844 7.3605 50 1 7.7791 5.4333 3.5458 51 1 6.6944 6.3552 2.4616 52 1 6.6383 3.7861 1.5869 53 1 5.1758 4.7704 1.3157 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131682925.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:33 Heat of formation + Delta-G solvation = -34.144629 kcal Electronic energy + Delta-G solvation = -31850.329360 eV Core-core repulsion = 27916.342531 eV Total energy + Delta-G solvation = -3933.986829 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.20303 -40.50436 -38.01686 -37.65976 -35.95062 -34.83178 -33.64160 -32.85191 -31.11427 -30.04816 -28.33434 -28.13277 -27.35734 -27.17826 -25.68929 -23.36860 -23.09906 -22.05101 -20.89285 -20.26017 -19.75428 -18.97588 -17.97252 -17.69523 -17.29625 -16.79718 -16.55737 -16.13354 -15.97346 -15.64900 -15.47803 -15.40933 -15.05798 -14.93063 -14.50807 -14.06673 -14.05212 -13.79895 -13.67314 -13.56158 -13.33928 -13.14122 -12.99863 -12.99054 -12.89011 -12.76262 -12.72584 -12.53711 -12.26248 -12.09551 -12.05814 -11.96163 -11.87720 -11.87077 -11.80137 -11.62195 -11.31022 -10.90143 -10.71181 -10.56723 -10.15147 -9.52925 -8.93195 -7.85552 -5.21729 1.42558 1.44417 1.48871 1.54291 1.55015 1.84507 2.48379 2.61132 3.28363 3.32957 3.46356 3.57225 3.72264 3.80986 3.84397 3.89486 3.92000 4.03534 4.13619 4.20675 4.25491 4.34951 4.36730 4.41118 4.45299 4.59289 4.62826 4.71591 4.73480 4.74606 4.76542 4.79841 4.83603 4.89830 4.93232 4.99219 5.04072 5.09119 5.11704 5.17536 5.21495 5.31894 5.35131 5.38989 5.41378 5.55425 5.68043 5.79269 5.96088 6.15434 6.32230 6.39355 7.06840 7.07363 7.73680 8.38956 9.25238 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.021924 B = 0.002961 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.821955 B = 9452.943633 C = 9761.828779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.149 4.149 3 C -0.068 4.068 4 C -0.069 4.069 5 C -0.157 4.157 6 C -0.149 4.149 7 C 0.519 3.481 8 O -0.583 6.583 9 N -0.607 5.607 10 C 0.065 3.935 11 C 0.056 3.944 12 H 0.050 0.950 13 C -0.137 4.137 14 O -0.369 6.369 15 C 0.111 3.889 16 C -0.148 4.148 17 C 0.199 3.801 18 N -0.620 5.620 19 C -0.241 4.241 20 H 0.085 0.915 21 C -0.069 4.069 22 N -0.954 5.954 23 Si 0.983 3.017 24 H -0.276 1.276 25 H -0.295 1.295 26 H -0.275 1.275 27 C 0.145 3.855 28 C 0.105 3.895 29 H 0.115 0.885 30 H 0.085 0.915 31 H 0.134 0.866 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.055 0.945 37 H 0.047 0.953 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.143 0.857 42 H 0.073 0.927 43 H 0.108 0.892 44 H 0.047 0.953 45 H 0.063 0.937 46 H 0.072 0.928 47 H 0.009 0.991 48 H 0.003 0.997 49 H 0.246 0.754 50 H 0.054 0.946 51 H 0.046 0.954 52 H 0.090 0.910 53 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.158 -24.596 -10.458 27.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.167 4.167 3 C -0.106 4.106 4 C -0.072 4.072 5 C -0.213 4.213 6 C -0.206 4.206 7 C 0.309 3.691 8 O -0.463 6.463 9 N -0.339 5.339 10 C -0.057 4.057 11 C -0.001 4.001 12 H 0.068 0.932 13 C -0.194 4.194 14 O -0.289 6.289 15 C 0.070 3.930 16 C -0.186 4.186 17 C 0.074 3.926 18 N -0.347 5.347 19 C -0.370 4.370 20 H 0.103 0.897 21 C -0.261 4.261 22 N -0.603 5.603 23 Si 0.810 3.190 24 H -0.202 1.202 25 H -0.221 1.221 26 H -0.201 1.201 27 C 0.020 3.980 28 C -0.019 4.019 29 H 0.133 0.867 30 H 0.104 0.896 31 H 0.151 0.849 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.114 0.886 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.118 0.882 39 H 0.089 0.911 40 H 0.115 0.885 41 H 0.160 0.840 42 H 0.092 0.908 43 H 0.127 0.873 44 H 0.067 0.933 45 H 0.082 0.918 46 H 0.090 0.910 47 H 0.027 0.973 48 H 0.021 0.979 49 H 0.055 0.945 50 H 0.072 0.928 51 H 0.064 0.936 52 H 0.108 0.892 53 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.165 -23.974 -10.591 26.714 hybrid contribution 0.046 1.694 0.576 1.790 sum -5.120 -22.280 -10.015 24.958 Atomic orbital electron populations 1.24013 0.96077 1.02275 1.00743 1.22942 0.95916 0.97726 1.00118 1.20528 0.97124 0.96316 0.96639 1.20736 0.96165 0.91761 0.98499 1.22365 0.98335 0.96799 1.03835 1.22132 0.99832 1.04433 0.94244 1.21375 0.79055 0.89927 0.78759 1.90670 1.67288 1.45979 1.42348 1.48171 1.30922 1.20372 1.34420 1.23340 1.04905 0.91391 0.86028 1.22832 0.93579 0.87532 0.96197 0.93193 1.21736 1.03256 0.97677 0.96730 1.87872 1.48062 1.31732 1.61197 1.22039 0.94394 0.88169 0.88445 1.23135 0.97513 0.98554 0.99425 1.20741 0.84282 0.93224 0.94325 1.44694 1.08068 1.46671 1.35218 1.19449 0.93624 1.14218 1.09718 0.89694 1.25703 0.97834 1.02433 1.00144 1.70198 1.13962 1.45257 1.30892 0.85092 0.77502 0.78565 0.77805 1.20160 1.22077 1.20116 1.21532 0.96659 0.88939 0.90885 1.21875 0.96152 0.88091 0.95774 0.86710 0.89643 0.84866 0.92960 0.91649 0.89297 0.88617 0.92632 0.93338 0.88227 0.91118 0.88532 0.83956 0.90762 0.87344 0.93338 0.91785 0.90969 0.97316 0.97885 0.94474 0.92797 0.93628 0.89164 0.89643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.40 14.32 67.78 0.97 -1.43 16 2 C -0.15 -1.86 7.89 25.64 0.20 -1.66 16 3 C -0.07 -1.26 4.03 29.85 0.12 -1.14 16 4 C -0.07 -1.18 0.52 -52.93 -0.03 -1.21 16 5 C -0.16 -1.68 7.87 71.98 0.57 -1.11 16 6 C -0.15 -2.18 7.65 71.98 0.55 -1.63 16 7 C 0.52 13.69 6.46 87.66 0.57 14.26 16 8 O -0.58 -20.60 15.47 -3.04 -0.05 -20.64 16 9 N -0.61 -15.21 2.94 -818.69 -2.41 -17.61 16 10 C 0.06 1.18 3.44 86.34 0.30 1.48 16 11 C 0.06 1.41 3.15 30.69 0.10 1.51 16 12 H 0.05 1.39 6.25 -2.38 -0.01 1.37 16 13 C -0.14 -2.57 9.57 71.98 0.69 -1.88 16 14 O -0.37 -13.13 9.92 -148.95 -1.48 -14.61 16 15 C 0.11 4.08 0.84 -10.16 -0.01 4.07 16 16 C -0.15 -6.13 5.88 31.56 0.19 -5.94 16 17 C 0.20 10.69 5.39 86.77 0.47 11.16 16 18 N -0.62 -33.82 3.40 -692.72 -2.36 -36.18 16 19 C -0.24 -14.12 10.28 84.03 0.86 -13.25 16 20 H 0.09 4.70 7.83 -2.91 -0.02 4.67 16 21 C -0.07 -4.06 5.49 84.86 0.47 -3.59 16 22 N -0.95 -59.88 10.31 21.65 0.22 -59.66 16 23 Si 0.98 47.26 29.55 68.60 2.03 49.29 16 24 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 25 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 26 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 27 C 0.15 6.29 6.42 86.56 0.56 6.85 16 28 C 0.10 3.18 5.31 86.01 0.46 3.63 16 29 H 0.11 1.00 8.06 -2.91 -0.02 0.98 16 30 H 0.09 1.23 7.84 -2.91 -0.02 1.21 16 31 H 0.13 1.05 6.60 -2.91 -0.02 1.03 16 32 H 0.05 1.20 7.66 -2.39 -0.02 1.18 16 33 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.09 0.70 4.66 -2.39 -0.01 0.69 16 35 H 0.10 0.59 6.11 -2.39 -0.01 0.58 16 36 H 0.05 0.70 8.10 -2.39 -0.02 0.68 16 37 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 38 H 0.10 0.92 7.60 -2.39 -0.02 0.91 16 39 H 0.07 1.00 5.23 -2.39 -0.01 0.99 16 40 H 0.10 1.47 8.09 -2.39 -0.02 1.45 16 41 H 0.14 1.72 2.67 -2.39 -0.01 1.71 16 42 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.06 2.65 7.82 -2.39 -0.02 2.63 16 46 H 0.07 2.79 6.10 -2.39 -0.01 2.78 16 47 H 0.01 0.52 7.38 -2.39 -0.02 0.50 16 48 H 0.00 0.18 7.49 -2.39 -0.02 0.16 16 49 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 50 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 51 H 0.05 1.89 7.99 -2.39 -0.02 1.87 16 52 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 53 H 0.09 2.90 6.83 -2.39 -0.02 2.88 16 Total: -1.00 -77.80 392.99 3.87 -73.93 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.89 Total: 15.38 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 7.02 Total: 10.11 kcal Atomic # 7 Polarization: -108.91 SS G_CDS: -4.54 Total: -113.45 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -1.52 Total: -35.25 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -77.80 3.87 -73.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131682925.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.788 kcal (2) G-P(sol) polarization free energy of solvation -77.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds