Wall clock time and date at job start Tue Mar 31 2020 21:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50695 * 120.00238 * 2 1 4 4 C 1.52999 * 109.47016 * 125.00242 * 3 2 1 5 5 C 1.52998 * 109.47210 * 60.00471 * 4 3 2 6 6 C 1.53003 * 109.47366 * 300.00066 * 4 3 2 7 7 C 1.50700 * 109.47028 * 180.02562 * 4 3 2 8 8 O 1.21283 * 120.00331 * 0.70870 * 7 4 3 9 9 N 1.34779 * 120.00204 * 180.71179 * 7 4 3 10 10 C 1.47172 * 121.07651 * 354.80307 * 9 7 4 11 11 C 1.53284 * 108.55725 * 128.72623 * 10 9 7 12 12 H 1.09003 * 109.51189 * 293.05002 * 11 10 9 13 13 C 1.52995 * 109.51080 * 172.95212 * 11 10 9 14 14 O 1.43123 * 109.22030 * 53.02559 * 11 10 9 15 15 C 1.41884 * 114.39115 * 299.11668 * 14 11 10 16 16 C 1.54377 * 110.72181 * 296.61923 * 15 14 11 17 17 C 1.54478 * 102.95267 * 276.11815 * 16 15 14 18 18 N 1.47084 * 107.28955 * 338.86255 * 17 16 15 19 19 C 1.36937 * 125.62669 * 178.89060 * 18 17 16 20 20 H 1.07997 * 119.99691 * 184.51453 * 19 18 17 21 21 C 1.38815 * 120.00140 * 4.52132 * 19 18 17 22 22 N 1.31615 * 119.99783 * 7.01982 * 21 19 18 23 23 Si 1.86797 * 119.99854 * 187.30354 * 21 19 18 24 24 H 1.48499 * 109.46974 * 274.76476 * 23 21 19 25 25 H 1.48498 * 109.47302 * 34.76790 * 23 21 19 26 26 H 1.48504 * 109.47119 * 154.76830 * 23 21 19 27 27 C 1.47573 * 108.74095 * 358.62542 * 18 17 16 28 28 C 1.47327 * 121.08118 * 174.77888 * 9 7 4 29 29 H 1.07997 * 119.99754 * 359.97438 * 1 2 3 30 30 H 1.08001 * 119.99945 * 180.02562 * 1 2 3 31 31 H 1.07997 * 119.99754 * 180.02562 * 2 1 3 32 32 H 1.09004 * 109.46938 * 5.00538 * 3 2 1 33 33 H 1.09000 * 109.47298 * 245.00690 * 3 2 1 34 34 H 1.08998 * 109.47543 * 166.08753 * 5 4 3 35 35 H 1.09004 * 109.47032 * 286.08586 * 5 4 3 36 36 H 1.08998 * 109.46961 * 46.08402 * 5 4 3 37 37 H 1.08994 * 109.46974 * 312.77035 * 6 4 3 38 38 H 1.09005 * 109.46359 * 72.76534 * 6 4 3 39 39 H 1.09000 * 109.47116 * 192.76577 * 6 4 3 40 40 H 1.08992 * 109.62222 * 248.44614 * 10 9 7 41 41 H 1.09006 * 109.62386 * 8.81912 * 10 9 7 42 42 H 1.08996 * 109.47741 * 60.00113 * 13 11 10 43 43 H 1.09001 * 109.46920 * 180.02562 * 13 11 10 44 44 H 1.09008 * 109.47392 * 299.99871 * 13 11 10 45 45 H 1.08998 * 110.73627 * 34.67250 * 16 15 14 46 46 H 1.08993 * 110.73208 * 157.80407 * 16 15 14 47 47 H 1.08997 * 109.99198 * 219.37662 * 17 16 15 48 48 H 1.09002 * 109.76514 * 98.22043 * 17 16 15 49 49 H 0.97004 * 120.00237 * 179.97438 * 22 21 19 50 50 H 1.09004 * 110.37354 * 142.38725 * 27 18 17 51 51 H 1.08995 * 110.37388 * 264.62621 * 27 18 17 52 52 H 1.09002 * 109.66765 * 109.44940 * 28 9 7 53 53 H 1.08991 * 109.70501 * 348.93857 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3329 1.1816 5 6 4.0246 0.1728 1.0558 6 6 2.2522 1.1960 2.4890 7 6 3.7882 2.6382 1.1820 8 8 3.5603 3.4702 0.3294 9 7 4.7152 2.8812 2.1297 10 6 4.9315 1.9396 3.2399 11 6 6.4282 1.6195 3.3235 12 1 6.7308 1.0602 2.4382 13 6 6.7027 0.7831 4.5748 14 8 7.1684 2.8424 3.3938 15 6 7.0025 3.6931 2.2704 16 6 7.5376 3.0172 0.9897 17 6 9.0495 3.3306 1.0387 18 7 9.2260 4.4965 1.9179 19 6 10.4231 5.0775 2.2415 20 1 10.4546 5.8875 2.9551 21 6 11.5958 4.6254 1.6524 22 7 11.5451 3.7358 0.6836 23 14 13.2463 5.2736 2.2398 24 1 13.5572 6.5446 1.5377 25 1 13.1897 5.5176 3.7035 26 1 14.3041 4.2738 1.9452 27 6 7.8997 4.9405 2.3885 28 6 5.5451 4.0977 2.0877 29 1 -0.5399 0.9353 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0897 33 1 2.6213 1.4026 -0.9314 34 1 4.8565 0.3285 1.7427 35 1 3.5211 -0.7624 1.3010 36 1 4.4011 0.1256 0.0340 37 1 1.4023 1.8783 2.4767 38 1 1.8943 0.1716 2.5925 39 1 2.9023 1.4405 3.3291 40 1 4.6015 2.3934 4.1743 41 1 4.3681 1.0242 3.0586 42 1 6.1353 -0.1460 4.5227 43 1 7.7672 0.5563 4.6338 44 1 6.4015 1.3437 5.4599 45 1 7.3628 1.9418 1.0190 46 1 7.0822 3.4567 0.1024 47 1 9.4146 3.5623 0.0381 48 1 9.5903 2.4754 1.4440 49 1 12.3646 3.4201 0.2716 50 1 7.9561 5.2706 3.4259 51 1 7.5217 5.7433 1.7556 52 1 5.2482 4.7724 2.8907 53 1 5.4201 4.5949 1.1258 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131682927.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:43 Heat of formation + Delta-G solvation = -13.768369 kcal Electronic energy + Delta-G solvation = -31889.480697 eV Core-core repulsion = 27956.377448 eV Total energy + Delta-G solvation = -3933.103248 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.13484 -39.22133 -36.81547 -36.39011 -34.77972 -33.36748 -32.65025 -31.34403 -29.33993 -28.52616 -27.72754 -27.18013 -26.35541 -25.74755 -23.93349 -22.40327 -21.83196 -20.20811 -19.88547 -19.17284 -18.81230 -17.03098 -16.77315 -16.60530 -16.20564 -15.57864 -15.35208 -14.74566 -14.63758 -14.41971 -14.26092 -14.11972 -13.87638 -13.47067 -13.45724 -13.14902 -12.73575 -12.67023 -12.46446 -12.30256 -12.25666 -12.13167 -11.98708 -11.89315 -11.73606 -11.56905 -11.25958 -11.18011 -11.01586 -10.96887 -10.91675 -10.80547 -10.28193 -10.23316 -10.09202 -10.04327 -9.70781 -9.60110 -9.50949 -9.42603 -8.56236 -8.35497 -6.78420 -5.66393 -3.00264 2.01646 2.58278 2.86776 3.43383 3.48251 3.50410 3.84727 4.16747 4.42935 4.52127 4.59478 4.65916 4.81851 4.84384 4.89813 4.96858 5.01899 5.09879 5.18498 5.25050 5.33966 5.40920 5.43482 5.48027 5.50499 5.54253 5.58040 5.58591 5.62242 5.70451 5.75867 5.81310 5.83247 5.93089 5.93968 5.94574 6.02528 6.14031 6.17213 6.35629 6.38358 6.48878 6.51098 6.53073 6.56673 6.66027 7.34784 7.54160 7.67515 7.68656 7.85347 8.12387 8.29217 9.25111 9.85777 10.51659 11.44689 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.022281 B = 0.002975 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.356605 B = 9408.126924 C = 9727.298058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.146 4.146 3 C -0.070 4.070 4 C -0.075 4.075 5 C -0.157 4.157 6 C -0.156 4.156 7 C 0.526 3.474 8 O -0.539 6.539 9 N -0.607 5.607 10 C 0.059 3.941 11 C 0.067 3.933 12 H 0.065 0.935 13 C -0.142 4.142 14 O -0.343 6.343 15 C 0.094 3.906 16 C -0.164 4.164 17 C 0.183 3.817 18 N -0.598 5.598 19 C -0.224 4.224 20 H 0.078 0.922 21 C -0.009 4.009 22 N -0.921 5.921 23 Si 0.911 3.089 24 H -0.289 1.289 25 H -0.282 1.282 26 H -0.291 1.291 27 C 0.153 3.847 28 C 0.098 3.902 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.112 0.888 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.060 0.940 46 H 0.065 0.935 47 H 0.056 0.944 48 H 0.033 0.967 49 H 0.251 0.749 50 H 0.051 0.949 51 H 0.036 0.964 52 H 0.071 0.929 53 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.789 -10.457 4.302 23.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.164 4.164 3 C -0.107 4.107 4 C -0.078 4.078 5 C -0.214 4.214 6 C -0.213 4.213 7 C 0.314 3.686 8 O -0.415 6.415 9 N -0.340 5.340 10 C -0.064 4.064 11 C 0.008 3.992 12 H 0.083 0.917 13 C -0.200 4.200 14 O -0.262 6.262 15 C 0.052 3.948 16 C -0.202 4.202 17 C 0.058 3.942 18 N -0.324 5.324 19 C -0.353 4.353 20 H 0.095 0.905 21 C -0.205 4.205 22 N -0.569 5.569 23 Si 0.742 3.258 24 H -0.216 1.216 25 H -0.208 1.208 26 H -0.217 1.217 27 C 0.026 3.974 28 C -0.025 4.025 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.127 0.873 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.130 0.870 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.074 0.926 48 H 0.051 0.949 49 H 0.062 0.938 50 H 0.069 0.931 51 H 0.054 0.946 52 H 0.090 0.910 53 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -20.556 -9.978 3.940 23.187 hybrid contribution 0.762 0.145 0.058 0.778 sum -19.795 -9.832 3.998 22.461 Atomic orbital electron populations 1.23838 0.95931 1.01721 1.01898 1.22947 0.95929 0.98342 0.99172 1.20625 0.97390 0.95464 0.97265 1.20694 0.95999 0.93300 0.97845 1.22252 0.98766 0.96834 1.03564 1.22270 1.00441 1.03062 0.95506 1.20513 0.79268 0.88367 0.80425 1.90687 1.65487 1.47654 1.37699 1.48096 1.37159 1.22933 1.25849 1.23095 0.98315 0.94828 0.90170 1.22494 0.89528 0.87700 0.99495 0.91677 1.21703 1.03390 0.98426 0.96477 1.87917 1.67986 1.29163 1.41135 1.22380 0.92345 0.93033 0.87010 1.23342 1.00825 0.99601 0.96450 1.21122 0.87549 0.89762 0.95719 1.44410 1.00183 1.32686 1.55135 1.19016 0.82819 1.13863 1.19563 0.90454 1.24784 0.97796 0.99625 0.98298 1.69961 1.26228 1.34322 1.26365 0.86144 0.83686 0.77755 0.78215 1.21585 1.20784 1.21686 1.21324 0.86358 0.91291 0.98462 1.22138 0.89864 0.86476 1.04030 0.88674 0.88620 0.87255 0.90778 0.90154 0.90993 0.91103 0.91570 0.91981 0.91132 0.90904 0.90595 0.87024 0.91285 0.91028 0.91714 0.92129 0.91682 0.92604 0.94913 0.93830 0.93120 0.94622 0.91046 0.88107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.42 14.32 29.01 0.42 -1.01 16 2 C -0.15 -1.14 7.92 -36.03 -0.29 -1.43 16 3 C -0.07 -0.69 3.93 -27.89 -0.11 -0.80 16 4 C -0.08 -0.74 0.52 -155.66 -0.08 -0.82 16 5 C -0.16 -1.35 7.47 37.16 0.28 -1.07 16 6 C -0.16 -1.22 7.59 37.16 0.28 -0.94 16 7 C 0.53 7.22 6.50 -10.98 -0.07 7.15 16 8 O -0.54 -9.33 15.50 5.56 0.09 -9.24 16 9 N -0.61 -8.11 2.93 -172.70 -0.51 -8.62 16 10 C 0.06 0.63 3.28 -3.53 -0.01 0.62 16 11 C 0.07 0.87 2.95 -26.59 -0.08 0.79 16 12 H 0.07 0.90 5.60 -51.93 -0.29 0.61 16 13 C -0.14 -1.50 9.57 37.15 0.36 -1.14 16 14 O -0.34 -6.11 9.93 -35.22 -0.35 -6.46 16 15 C 0.09 1.70 0.84 -89.65 -0.08 1.62 16 16 C -0.16 -3.21 5.87 -25.23 -0.15 -3.36 16 17 C 0.18 4.58 5.42 -2.95 -0.02 4.57 16 18 N -0.60 -15.63 3.40 -170.31 -0.58 -16.21 16 19 C -0.22 -6.37 10.27 -15.06 -0.15 -6.52 16 20 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 21 C -0.01 -0.26 5.46 -17.43 -0.10 -0.35 16 22 N -0.92 -27.52 10.43 55.49 0.58 -26.94 16 23 Si 0.91 22.46 29.56 -169.99 -5.02 17.43 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 C 0.15 3.24 6.41 -2.87 -0.02 3.22 16 28 C 0.10 1.52 5.28 -3.92 -0.02 1.49 16 29 H 0.09 0.69 7.84 -52.49 -0.41 0.28 16 30 H 0.10 0.57 8.06 -52.49 -0.42 0.15 16 31 H 0.11 0.74 7.15 -52.49 -0.38 0.37 16 32 H 0.07 0.80 7.74 -51.93 -0.40 0.40 16 33 H 0.08 0.90 8.11 -51.93 -0.42 0.48 16 34 H 0.07 0.64 4.24 -51.93 -0.22 0.42 16 35 H 0.07 0.45 7.04 -51.93 -0.37 0.09 16 36 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 37 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 38 H 0.07 0.44 7.47 -51.93 -0.39 0.06 16 39 H 0.07 0.54 4.66 -51.93 -0.24 0.30 16 40 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 41 H 0.11 0.92 3.03 -51.93 -0.16 0.77 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 45 H 0.06 1.10 6.08 -51.93 -0.32 0.79 16 46 H 0.06 1.27 7.82 -51.93 -0.41 0.86 16 47 H 0.06 1.56 7.09 -51.93 -0.37 1.19 16 48 H 0.03 0.90 7.82 -51.93 -0.41 0.50 16 49 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 50 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 51 H 0.04 0.74 8.00 -51.93 -0.42 0.32 16 52 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 53 H 0.10 1.69 6.91 -51.93 -0.36 1.33 16 LS Contribution 392.43 15.07 5.91 5.91 Total: -1.00 -33.16 392.43 -8.60 -41.76 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -8.89 Total: 0.35 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: 0.16 Total: 2.01 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: -0.51 Total: -51.77 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.26 Total: -15.70 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.16 -8.60 -41.76 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131682927.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.993 kcal (2) G-P(sol) polarization free energy of solvation -33.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds