Wall clock time and date at job start Tue Mar 31 2020 21:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50695 * 120.00238 * 2 1 4 4 C 1.52999 * 109.47016 * 125.00242 * 3 2 1 5 5 C 1.52998 * 109.47210 * 60.00471 * 4 3 2 6 6 C 1.53003 * 109.47366 * 300.00066 * 4 3 2 7 7 C 1.50700 * 109.47028 * 180.02562 * 4 3 2 8 8 O 1.21283 * 120.00331 * 0.70870 * 7 4 3 9 9 N 1.34779 * 120.00204 * 180.71179 * 7 4 3 10 10 C 1.47172 * 121.07651 * 354.80307 * 9 7 4 11 11 C 1.53284 * 108.55725 * 128.72623 * 10 9 7 12 12 H 1.09003 * 109.51189 * 293.05002 * 11 10 9 13 13 C 1.52995 * 109.51080 * 172.95212 * 11 10 9 14 14 O 1.43123 * 109.22030 * 53.02559 * 11 10 9 15 15 C 1.41884 * 114.39115 * 299.11668 * 14 11 10 16 16 C 1.54377 * 110.72181 * 296.61923 * 15 14 11 17 17 C 1.54478 * 102.95267 * 276.11815 * 16 15 14 18 18 N 1.47084 * 107.28955 * 338.86255 * 17 16 15 19 19 C 1.36937 * 125.62669 * 178.89060 * 18 17 16 20 20 H 1.07997 * 119.99691 * 184.51453 * 19 18 17 21 21 C 1.38815 * 120.00140 * 4.52132 * 19 18 17 22 22 N 1.31615 * 119.99783 * 7.01982 * 21 19 18 23 23 Si 1.86797 * 119.99854 * 187.30354 * 21 19 18 24 24 H 1.48499 * 109.46974 * 274.76476 * 23 21 19 25 25 H 1.48498 * 109.47302 * 34.76790 * 23 21 19 26 26 H 1.48504 * 109.47119 * 154.76830 * 23 21 19 27 27 C 1.47573 * 108.74095 * 358.62542 * 18 17 16 28 28 C 1.47327 * 121.08118 * 174.77888 * 9 7 4 29 29 H 1.07997 * 119.99754 * 359.97438 * 1 2 3 30 30 H 1.08001 * 119.99945 * 180.02562 * 1 2 3 31 31 H 1.07997 * 119.99754 * 180.02562 * 2 1 3 32 32 H 1.09004 * 109.46938 * 5.00538 * 3 2 1 33 33 H 1.09000 * 109.47298 * 245.00690 * 3 2 1 34 34 H 1.08998 * 109.47543 * 166.08753 * 5 4 3 35 35 H 1.09004 * 109.47032 * 286.08586 * 5 4 3 36 36 H 1.08998 * 109.46961 * 46.08402 * 5 4 3 37 37 H 1.08994 * 109.46974 * 312.77035 * 6 4 3 38 38 H 1.09005 * 109.46359 * 72.76534 * 6 4 3 39 39 H 1.09000 * 109.47116 * 192.76577 * 6 4 3 40 40 H 1.08992 * 109.62222 * 248.44614 * 10 9 7 41 41 H 1.09006 * 109.62386 * 8.81912 * 10 9 7 42 42 H 1.08996 * 109.47741 * 60.00113 * 13 11 10 43 43 H 1.09001 * 109.46920 * 180.02562 * 13 11 10 44 44 H 1.09008 * 109.47392 * 299.99871 * 13 11 10 45 45 H 1.08998 * 110.73627 * 34.67250 * 16 15 14 46 46 H 1.08993 * 110.73208 * 157.80407 * 16 15 14 47 47 H 1.08997 * 109.99198 * 219.37662 * 17 16 15 48 48 H 1.09002 * 109.76514 * 98.22043 * 17 16 15 49 49 H 0.97004 * 120.00237 * 179.97438 * 22 21 19 50 50 H 1.09004 * 110.37354 * 142.38725 * 27 18 17 51 51 H 1.08995 * 110.37388 * 264.62621 * 27 18 17 52 52 H 1.09002 * 109.66765 * 109.44940 * 28 9 7 53 53 H 1.08991 * 109.70501 * 348.93857 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3329 1.1816 5 6 4.0246 0.1728 1.0558 6 6 2.2522 1.1960 2.4890 7 6 3.7882 2.6382 1.1820 8 8 3.5603 3.4702 0.3294 9 7 4.7152 2.8812 2.1297 10 6 4.9315 1.9396 3.2399 11 6 6.4282 1.6195 3.3235 12 1 6.7308 1.0602 2.4382 13 6 6.7027 0.7831 4.5748 14 8 7.1684 2.8424 3.3938 15 6 7.0025 3.6931 2.2704 16 6 7.5376 3.0172 0.9897 17 6 9.0495 3.3306 1.0387 18 7 9.2260 4.4965 1.9179 19 6 10.4231 5.0775 2.2415 20 1 10.4546 5.8875 2.9551 21 6 11.5958 4.6254 1.6524 22 7 11.5451 3.7358 0.6836 23 14 13.2463 5.2736 2.2398 24 1 13.5572 6.5446 1.5377 25 1 13.1897 5.5176 3.7035 26 1 14.3041 4.2738 1.9452 27 6 7.8997 4.9405 2.3885 28 6 5.5451 4.0977 2.0877 29 1 -0.5399 0.9353 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0897 33 1 2.6213 1.4026 -0.9314 34 1 4.8565 0.3285 1.7427 35 1 3.5211 -0.7624 1.3010 36 1 4.4011 0.1256 0.0340 37 1 1.4023 1.8783 2.4767 38 1 1.8943 0.1716 2.5925 39 1 2.9023 1.4405 3.3291 40 1 4.6015 2.3934 4.1743 41 1 4.3681 1.0242 3.0586 42 1 6.1353 -0.1460 4.5227 43 1 7.7672 0.5563 4.6338 44 1 6.4015 1.3437 5.4599 45 1 7.3628 1.9418 1.0190 46 1 7.0822 3.4567 0.1024 47 1 9.4146 3.5623 0.0381 48 1 9.5903 2.4754 1.4440 49 1 12.3646 3.4201 0.2716 50 1 7.9561 5.2706 3.4259 51 1 7.5217 5.7433 1.7556 52 1 5.2482 4.7724 2.8907 53 1 5.4201 4.5949 1.1258 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131682927.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:41 Heat of formation + Delta-G solvation = -34.550624 kcal Electronic energy + Delta-G solvation = -31890.381883 eV Core-core repulsion = 27956.377448 eV Total energy + Delta-G solvation = -3934.004435 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.23977 -40.49943 -38.02836 -37.64864 -35.96344 -34.83607 -33.65264 -32.84691 -31.11766 -30.05333 -28.38931 -28.05546 -27.36236 -27.19404 -25.68897 -23.37398 -23.09231 -22.05321 -20.84595 -20.32796 -19.72928 -18.97710 -17.97518 -17.68168 -17.33080 -16.80462 -16.55570 -16.21889 -15.84885 -15.75363 -15.52795 -15.17853 -15.06079 -14.92112 -14.64017 -14.06410 -13.99003 -13.85830 -13.62066 -13.54489 -13.42552 -13.09973 -13.02677 -12.97981 -12.87521 -12.77229 -12.72296 -12.46790 -12.25863 -12.11474 -12.06539 -12.01596 -11.87147 -11.85917 -11.81699 -11.60521 -11.36832 -10.91722 -10.72678 -10.54628 -10.14913 -9.54542 -8.92321 -7.85436 -5.22288 1.42840 1.44772 1.47645 1.53467 1.56192 1.83585 2.48349 2.60814 3.28570 3.32423 3.45946 3.56449 3.70720 3.80740 3.85597 3.89087 3.91232 4.02420 4.14348 4.18013 4.24961 4.35388 4.38169 4.41909 4.46267 4.57117 4.62999 4.70957 4.73416 4.75198 4.78290 4.80087 4.84354 4.93119 4.93362 4.96600 5.04102 5.08311 5.09883 5.17343 5.21354 5.31442 5.33731 5.36572 5.40778 5.56106 5.67859 5.79903 5.95886 6.15992 6.30985 6.38710 7.05937 7.06889 7.73610 8.38939 9.24551 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.022281 B = 0.002975 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.356605 B = 9408.126924 C = 9727.298058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.151 4.151 3 C -0.067 4.067 4 C -0.069 4.069 5 C -0.156 4.156 6 C -0.152 4.152 7 C 0.519 3.481 8 O -0.582 6.582 9 N -0.607 5.607 10 C 0.063 3.937 11 C 0.057 3.943 12 H 0.055 0.945 13 C -0.137 4.137 14 O -0.369 6.369 15 C 0.112 3.888 16 C -0.147 4.147 17 C 0.196 3.804 18 N -0.619 5.619 19 C -0.241 4.241 20 H 0.084 0.916 21 C -0.068 4.068 22 N -0.952 5.952 23 Si 0.981 3.019 24 H -0.283 1.283 25 H -0.270 1.270 26 H -0.294 1.294 27 C 0.145 3.855 28 C 0.106 3.894 29 H 0.090 0.910 30 H 0.114 0.886 31 H 0.127 0.873 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.144 0.856 42 H 0.108 0.892 43 H 0.049 0.951 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.064 0.936 47 H 0.017 0.983 48 H -0.003 1.003 49 H 0.246 0.754 50 H 0.054 0.946 51 H 0.044 0.956 52 H 0.087 0.913 53 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.957 -12.220 6.371 26.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.169 4.169 3 C -0.105 4.105 4 C -0.072 4.072 5 C -0.213 4.213 6 C -0.209 4.209 7 C 0.309 3.691 8 O -0.462 6.462 9 N -0.340 5.340 10 C -0.058 4.058 11 C -0.001 4.001 12 H 0.073 0.927 13 C -0.195 4.195 14 O -0.288 6.288 15 C 0.071 3.929 16 C -0.186 4.186 17 C 0.071 3.929 18 N -0.345 5.345 19 C -0.370 4.370 20 H 0.102 0.898 21 C -0.261 4.261 22 N -0.601 5.601 23 Si 0.809 3.191 24 H -0.209 1.209 25 H -0.195 1.195 26 H -0.220 1.220 27 C 0.019 3.981 28 C -0.018 4.018 29 H 0.108 0.892 30 H 0.132 0.868 31 H 0.144 0.856 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.121 0.879 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.114 0.886 39 H 0.099 0.901 40 H 0.112 0.888 41 H 0.161 0.839 42 H 0.127 0.873 43 H 0.068 0.932 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.083 0.917 47 H 0.035 0.965 48 H 0.015 0.985 49 H 0.056 0.944 50 H 0.072 0.928 51 H 0.061 0.939 52 H 0.105 0.895 53 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -22.759 -11.747 6.046 26.315 hybrid contribution 1.393 0.703 -0.599 1.671 sum -21.366 -11.043 5.446 24.660 Atomic orbital electron populations 1.23998 0.95823 1.02394 1.00532 1.22884 0.96039 0.97611 1.00331 1.20552 0.97091 0.96440 0.96434 1.20737 0.96014 0.91298 0.99151 1.22287 0.98570 0.97544 1.02925 1.22282 1.00035 1.04560 0.94045 1.21348 0.79017 0.89292 0.79405 1.90667 1.66863 1.49375 1.39306 1.48177 1.36579 1.22584 1.26612 1.23293 0.96823 0.95733 0.89938 1.22843 0.90627 0.85993 1.00611 0.92668 1.21743 1.02745 0.99710 0.95273 1.87880 1.69578 1.30873 1.40497 1.22011 0.93194 0.91548 0.86188 1.23140 0.96885 1.00820 0.97736 1.20785 0.90626 0.88341 0.93194 1.44694 1.01468 1.32928 1.55429 1.19442 0.84090 1.14003 1.19422 0.89849 1.25686 1.01452 1.00300 0.98630 1.70193 1.26619 1.35729 1.27558 0.85062 0.78863 0.76989 0.78198 1.20931 1.19497 1.22015 1.21515 0.84972 0.93158 0.98415 1.21851 0.88448 0.87748 1.03744 0.89173 0.86817 0.85562 0.92341 0.92343 0.91118 0.87906 0.92810 0.92558 0.88609 0.90095 0.88824 0.83859 0.87303 0.93151 0.90954 0.90584 0.91730 0.96457 0.98486 0.94438 0.92802 0.93866 0.89521 0.89695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.24 14.32 67.78 0.97 -1.27 16 2 C -0.15 -1.96 7.92 25.64 0.20 -1.76 16 3 C -0.07 -1.27 3.93 29.85 0.12 -1.15 16 4 C -0.07 -1.21 0.52 -52.93 -0.03 -1.23 16 5 C -0.16 -2.21 7.47 71.98 0.54 -1.67 16 6 C -0.15 -1.81 7.59 71.98 0.55 -1.26 16 7 C 0.52 13.73 6.50 87.66 0.57 14.30 16 8 O -0.58 -20.47 15.50 -3.04 -0.05 -20.52 16 9 N -0.61 -15.23 2.93 -818.68 -2.40 -17.63 16 10 C 0.06 1.16 3.28 86.35 0.28 1.44 16 11 C 0.06 1.38 2.95 30.69 0.09 1.47 16 12 H 0.06 1.44 5.60 -2.39 -0.01 1.43 16 13 C -0.14 -2.49 9.57 71.98 0.69 -1.80 16 14 O -0.37 -12.85 9.93 -148.95 -1.48 -14.33 16 15 C 0.11 4.06 0.84 -10.16 -0.01 4.05 16 16 C -0.15 -5.95 5.87 31.56 0.19 -5.76 16 17 C 0.20 10.32 5.42 86.77 0.47 10.79 16 18 N -0.62 -33.50 3.40 -692.73 -2.36 -35.86 16 19 C -0.24 -14.02 10.27 84.03 0.86 -13.16 16 20 H 0.08 4.62 7.84 -2.91 -0.02 4.59 16 21 C -0.07 -4.00 5.46 84.86 0.46 -3.54 16 22 N -0.95 -59.33 10.43 21.65 0.23 -59.10 16 23 Si 0.98 47.09 29.56 68.60 2.03 49.11 16 24 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 25 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 26 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 27 C 0.15 6.26 6.41 86.55 0.56 6.81 16 28 C 0.11 3.22 5.28 86.01 0.45 3.67 16 29 H 0.09 1.14 7.84 -2.91 -0.02 1.12 16 30 H 0.11 0.95 8.06 -2.91 -0.02 0.93 16 31 H 0.13 1.23 7.15 -2.91 -0.02 1.21 16 32 H 0.06 1.26 7.74 -2.38 -0.02 1.24 16 33 H 0.06 1.33 8.11 -2.39 -0.02 1.31 16 34 H 0.07 1.02 4.24 -2.39 -0.01 1.01 16 35 H 0.10 0.82 7.04 -2.38 -0.02 0.80 16 36 H 0.05 0.91 8.07 -2.39 -0.02 0.89 16 37 H 0.06 0.77 8.08 -2.39 -0.02 0.75 16 38 H 0.10 0.71 7.47 -2.38 -0.02 0.69 16 39 H 0.08 0.83 4.66 -2.39 -0.01 0.82 16 40 H 0.09 1.48 8.09 -2.39 -0.02 1.46 16 41 H 0.14 1.72 3.03 -2.38 -0.01 1.72 16 42 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 45 H 0.08 2.81 6.08 -2.39 -0.01 2.79 16 46 H 0.06 2.60 7.82 -2.39 -0.02 2.58 16 47 H 0.02 1.03 7.09 -2.39 -0.02 1.01 16 48 H 0.00 -0.18 7.82 -2.39 -0.02 -0.20 16 49 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 50 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 51 H 0.04 1.81 8.00 -2.39 -0.02 1.79 16 52 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 53 H 0.08 2.88 6.91 -2.39 -0.02 2.87 16 Total: -1.00 -76.78 392.43 3.82 -72.96 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 0.89 Total: 15.43 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 6.96 Total: 9.93 kcal Atomic # 7 Polarization: -108.06 SS G_CDS: -4.53 Total: -112.59 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -1.53 Total: -34.85 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.11 kcal Total: -76.78 3.82 -72.96 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131682927.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.412 kcal (2) G-P(sol) polarization free energy of solvation -76.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds