Wall clock time and date at job start Tue Mar 31 2020 21:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50695 * 120.00082 * 2 1 4 4 C 1.52995 * 109.46962 * 125.00732 * 3 2 1 5 5 C 1.52997 * 109.47644 * 59.99937 * 4 3 2 6 6 C 1.53006 * 109.47074 * 299.99596 * 4 3 2 7 7 C 1.50704 * 109.47323 * 180.02562 * 4 3 2 8 8 O 1.21285 * 119.99548 * 0.87631 * 7 4 3 9 9 N 1.34769 * 120.00357 * 180.88063 * 7 4 3 10 10 C 1.47169 * 121.07411 * 354.98856 * 9 7 4 11 11 C 1.53277 * 108.55198 * 128.74684 * 10 9 7 12 12 H 1.09006 * 109.50700 * 293.08771 * 11 10 9 13 13 C 1.52998 * 109.51103 * 172.94622 * 11 10 9 14 14 O 1.43123 * 109.23910 * 53.01271 * 11 10 9 15 15 C 1.41874 * 114.38313 * 299.12147 * 14 11 10 16 16 C 1.54366 * 110.73451 * 183.23841 * 15 14 11 17 17 C 1.54457 * 102.87046 * 83.67582 * 16 15 14 18 18 N 1.47085 * 107.29561 * 21.48747 * 17 16 15 19 19 C 1.36932 * 125.62836 * 181.00441 * 18 17 16 20 20 H 1.08002 * 120.00114 * 179.97438 * 19 18 17 21 21 C 1.38810 * 119.99960 * 359.97438 * 19 18 17 22 22 N 1.31624 * 120.00196 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00034 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47177 * 60.00152 * 23 21 19 25 25 H 1.48502 * 109.47408 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47229 * 299.99797 * 23 21 19 27 27 C 1.47575 * 108.74519 * 1.00694 * 18 17 16 28 28 C 1.47332 * 121.07663 * 174.96511 * 9 7 4 29 29 H 1.08003 * 120.00306 * 179.97438 * 1 2 3 30 30 H 1.07999 * 119.99870 * 359.97438 * 1 2 3 31 31 H 1.08006 * 119.99544 * 180.02562 * 2 1 3 32 32 H 1.09005 * 109.47001 * 5.00449 * 3 2 1 33 33 H 1.08996 * 109.47200 * 245.00636 * 3 2 1 34 34 H 1.08993 * 109.47694 * 162.77451 * 5 4 3 35 35 H 1.08999 * 109.47088 * 282.77602 * 5 4 3 36 36 H 1.08997 * 109.46851 * 42.76996 * 5 4 3 37 37 H 1.09001 * 109.47124 * 307.42572 * 6 4 3 38 38 H 1.09000 * 109.46730 * 67.42455 * 6 4 3 39 39 H 1.09004 * 109.47239 * 187.42204 * 6 4 3 40 40 H 1.09003 * 109.62100 * 248.46298 * 10 9 7 41 41 H 1.09000 * 109.62173 * 9.02611 * 10 9 7 42 42 H 1.09004 * 109.47420 * 59.99610 * 13 11 10 43 43 H 1.08999 * 109.47339 * 179.97438 * 13 11 10 44 44 H 1.09002 * 109.46921 * 299.99744 * 13 11 10 45 45 H 1.08999 * 110.73047 * 202.02133 * 16 15 14 46 46 H 1.09001 * 110.73229 * 325.33306 * 16 15 14 47 47 H 1.09000 * 109.88047 * 262.06157 * 17 16 15 48 48 H 1.09004 * 110.00552 * 140.97928 * 17 16 15 49 49 H 0.96991 * 119.99977 * 179.97438 * 22 21 19 50 50 H 1.09003 * 110.37342 * 217.85102 * 27 18 17 51 51 H 1.08997 * 110.47628 * 95.54986 * 27 18 17 52 52 H 1.08997 * 109.67324 * 348.90888 * 28 9 7 53 53 H 1.09003 * 109.66918 * 109.43215 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3329 1.1815 5 6 4.0246 0.1728 1.0557 6 6 2.2523 1.1960 2.4890 7 6 3.7883 2.6383 1.1819 8 8 3.5580 3.4714 0.3312 9 7 4.7176 2.8798 2.1276 10 6 4.9396 1.9345 3.2335 11 6 6.4373 1.6179 3.3113 12 1 6.7388 1.0634 2.4225 13 6 6.7178 0.7776 4.5587 14 8 7.1749 2.8422 3.3838 15 6 7.0036 3.6965 2.2641 16 6 7.8953 4.9501 2.3916 17 6 9.2569 4.4601 1.8515 18 7 8.9952 3.2831 1.0091 19 6 9.9444 2.5407 0.3588 20 1 9.6495 1.6903 -0.2381 21 6 11.2858 2.8812 0.4666 22 7 11.6453 3.9179 1.1935 23 14 12.5807 1.8689 -0.4212 24 1 12.3186 1.9018 -1.8825 25 1 13.9258 2.4349 -0.1462 26 1 12.5272 0.4650 0.0599 27 6 7.5409 3.0343 0.9804 28 6 5.5447 4.0984 2.0874 29 1 -0.5401 -0.9353 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 1.3586 2.1316 0.0897 33 1 2.6212 1.4026 -0.9314 34 1 4.8848 0.3574 1.6991 35 1 3.5376 -0.7545 1.3575 36 1 4.3563 0.0887 0.0208 37 1 1.4594 1.9435 2.5177 38 1 1.8145 0.1996 2.5476 39 1 2.9252 1.3475 3.3330 40 1 4.6113 2.3839 4.1707 41 1 4.3806 1.0171 3.0486 42 1 6.1524 -0.1528 4.5048 43 1 7.7829 0.5524 4.6132 44 1 6.4178 1.3341 5.4466 45 1 7.5072 5.7636 1.7786 46 1 7.9817 5.2578 3.4336 47 1 9.9074 4.1845 2.6815 48 1 9.7264 5.2441 1.2573 49 1 12.5826 4.1556 1.2691 50 1 7.3388 1.9632 0.9926 51 1 7.0927 3.4942 0.0997 52 1 5.4153 4.5982 1.1274 53 1 5.2486 4.7695 2.8937 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131682928.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:46 Heat of formation + Delta-G solvation = -34.803642 kcal Electronic energy + Delta-G solvation = -32082.123437 eV Core-core repulsion = 28148.108031 eV Total energy + Delta-G solvation = -3934.015406 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.23601 -40.49568 -38.00496 -37.65212 -35.95978 -34.90560 -33.66326 -32.86986 -31.12336 -29.89943 -28.35265 -28.08889 -27.47471 -27.19572 -25.71023 -23.36967 -23.15423 -21.96815 -20.85327 -20.29380 -19.73962 -18.99314 -17.98335 -17.70257 -17.34196 -16.80625 -16.53868 -16.24942 -15.86954 -15.70174 -15.57872 -15.18334 -15.15744 -14.86608 -14.67893 -14.03478 -13.95550 -13.81452 -13.62215 -13.51643 -13.41750 -13.13849 -13.05539 -12.97441 -12.89186 -12.77898 -12.64880 -12.47390 -12.23860 -12.11141 -12.07671 -12.03104 -11.94280 -11.83522 -11.81293 -11.68966 -11.37014 -10.92957 -10.71633 -10.54173 -10.15633 -9.54191 -8.93285 -7.87451 -5.23528 1.42172 1.42283 1.46186 1.52497 1.53137 1.84787 2.46153 2.62189 3.27902 3.30869 3.46854 3.60363 3.69312 3.73513 3.86138 3.88302 3.96222 4.05854 4.12186 4.16807 4.24395 4.36091 4.37682 4.44611 4.52330 4.57566 4.60894 4.66733 4.68123 4.75757 4.78064 4.79152 4.90402 4.91158 4.92951 4.96588 5.02469 5.08115 5.09157 5.16886 5.21885 5.30864 5.34199 5.35686 5.37672 5.61015 5.72812 5.79257 5.95093 6.15194 6.30356 6.37228 7.05566 7.06454 7.72147 8.37506 9.22786 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015008 B = 0.003431 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.174573 B = 8158.540416 C = 8603.424242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.152 4.152 3 C -0.067 4.067 4 C -0.069 4.069 5 C -0.156 4.156 6 C -0.151 4.151 7 C 0.518 3.482 8 O -0.583 6.583 9 N -0.610 5.610 10 C 0.065 3.935 11 C 0.059 3.941 12 H 0.046 0.954 13 C -0.136 4.136 14 O -0.367 6.367 15 C 0.109 3.891 16 C -0.119 4.119 17 C 0.192 3.808 18 N -0.619 5.619 19 C -0.248 4.248 20 H 0.076 0.924 21 C -0.062 4.062 22 N -0.948 5.948 23 Si 0.980 3.020 24 H -0.278 1.278 25 H -0.291 1.291 26 H -0.275 1.275 27 C 0.123 3.877 28 C 0.105 3.895 29 H 0.114 0.886 30 H 0.091 0.909 31 H 0.125 0.875 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.103 0.897 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.142 0.858 42 H 0.106 0.894 43 H 0.047 0.953 44 H 0.076 0.924 45 H 0.091 0.909 46 H 0.092 0.908 47 H 0.013 0.987 48 H 0.009 0.991 49 H 0.248 0.752 50 H 0.036 0.964 51 H 0.012 0.988 52 H 0.083 0.917 53 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.588 -9.481 7.507 25.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.170 4.170 3 C -0.105 4.105 4 C -0.072 4.072 5 C -0.213 4.213 6 C -0.208 4.208 7 C 0.308 3.692 8 O -0.463 6.463 9 N -0.342 5.342 10 C -0.057 4.057 11 C 0.001 3.999 12 H 0.064 0.936 13 C -0.193 4.193 14 O -0.286 6.286 15 C 0.067 3.933 16 C -0.157 4.157 17 C 0.067 3.933 18 N -0.345 5.345 19 C -0.376 4.376 20 H 0.094 0.906 21 C -0.255 4.255 22 N -0.597 5.597 23 Si 0.807 3.193 24 H -0.204 1.204 25 H -0.217 1.217 26 H -0.201 1.201 27 C -0.003 4.003 28 C -0.018 4.018 29 H 0.132 0.868 30 H 0.110 0.890 31 H 0.143 0.857 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.122 0.878 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.113 0.887 39 H 0.102 0.898 40 H 0.117 0.883 41 H 0.159 0.841 42 H 0.125 0.875 43 H 0.066 0.934 44 H 0.095 0.905 45 H 0.110 0.890 46 H 0.111 0.889 47 H 0.031 0.969 48 H 0.027 0.973 49 H 0.057 0.943 50 H 0.055 0.945 51 H 0.029 0.971 52 H 0.101 0.899 53 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -22.376 -8.993 7.192 25.165 hybrid contribution 1.323 0.097 -1.155 1.759 sum -21.053 -8.896 6.037 23.639 Atomic orbital electron populations 1.23999 0.95726 1.02452 1.00393 1.22873 0.96090 0.97552 1.00453 1.20549 0.97105 0.96531 0.96337 1.20729 0.95947 0.91194 0.99289 1.22270 0.98515 0.97754 1.02799 1.22279 1.00170 1.04359 0.93978 1.21344 0.79108 0.89303 0.79397 1.90661 1.66992 1.49335 1.39265 1.48215 1.36542 1.22511 1.26910 1.23295 0.96550 0.95654 0.90171 1.22792 0.90734 0.85994 1.00368 0.93648 1.21726 1.02590 0.99654 0.95344 1.87822 1.69787 1.30544 1.40488 1.22040 0.93407 0.91509 0.86346 1.22729 0.95001 0.95272 1.02747 1.20873 0.92373 0.87798 0.92248 1.44689 1.00961 1.32226 1.56591 1.19342 0.87185 1.07946 1.23164 0.90636 1.25655 0.98940 0.99651 1.01297 1.70179 1.15610 1.29338 1.44562 0.85142 0.77861 0.78065 0.78188 1.20433 1.21681 1.20085 1.21998 0.85027 0.97835 0.95446 1.21938 0.88297 0.87694 1.03892 0.86779 0.89046 0.85720 0.92141 0.92564 0.91522 0.87788 0.93022 0.92507 0.88741 0.89831 0.88330 0.84075 0.87531 0.93386 0.90458 0.89046 0.88906 0.96910 0.97251 0.94262 0.94539 0.97052 0.89852 0.88756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.35 14.32 67.78 0.97 -1.38 16 2 C -0.15 -2.15 7.83 25.64 0.20 -1.95 16 3 C -0.07 -1.36 3.94 29.84 0.12 -1.24 16 4 C -0.07 -1.30 0.52 -52.93 -0.03 -1.33 16 5 C -0.16 -2.58 7.37 71.98 0.53 -2.05 16 6 C -0.15 -1.92 7.69 71.98 0.55 -1.37 16 7 C 0.52 14.45 6.49 87.66 0.57 15.02 16 8 O -0.58 -21.21 15.50 -3.05 -0.05 -21.26 16 9 N -0.61 -15.99 2.93 -818.68 -2.40 -18.39 16 10 C 0.06 1.25 3.33 86.34 0.29 1.54 16 11 C 0.06 1.55 2.96 30.69 0.09 1.64 16 12 H 0.05 1.40 5.57 -2.38 -0.01 1.38 16 13 C -0.14 -2.66 9.57 71.98 0.69 -1.97 16 14 O -0.37 -12.96 9.92 -148.95 -1.48 -14.44 16 15 C 0.11 3.96 0.83 -10.17 -0.01 3.95 16 16 C -0.12 -4.61 6.12 31.55 0.19 -4.42 16 17 C 0.19 10.03 5.39 86.76 0.47 10.50 16 18 N -0.62 -33.83 3.40 -692.75 -2.36 -36.19 16 19 C -0.25 -14.60 10.28 84.03 0.86 -13.74 16 20 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 21 C -0.06 -3.67 5.49 84.86 0.47 -3.20 16 22 N -0.95 -58.77 10.31 21.65 0.22 -58.55 16 23 Si 0.98 47.06 29.55 68.60 2.03 49.09 16 24 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 25 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 26 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 27 C 0.12 5.51 6.19 86.55 0.54 6.04 16 28 C 0.11 3.21 5.28 86.01 0.45 3.66 16 29 H 0.11 1.03 8.06 -2.91 -0.02 1.00 16 30 H 0.09 1.20 7.84 -2.91 -0.02 1.18 16 31 H 0.12 1.40 7.24 -2.91 -0.02 1.38 16 32 H 0.06 1.35 7.74 -2.38 -0.02 1.33 16 33 H 0.06 1.38 8.10 -2.39 -0.02 1.36 16 34 H 0.07 1.18 4.24 -2.39 -0.01 1.17 16 35 H 0.10 1.03 7.25 -2.39 -0.02 1.02 16 36 H 0.05 1.02 8.02 -2.39 -0.02 1.00 16 37 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.09 0.81 7.35 -2.39 -0.02 0.79 16 39 H 0.08 0.88 4.63 -2.39 -0.01 0.87 16 40 H 0.10 1.56 8.12 -2.39 -0.02 1.54 16 41 H 0.14 1.92 2.99 -2.39 -0.01 1.91 16 42 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 43 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.09 3.18 8.00 -2.39 -0.02 3.16 16 46 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 47 H 0.01 0.74 7.39 -2.39 -0.02 0.73 16 48 H 0.01 0.54 7.49 -2.38 -0.02 0.52 16 49 H 0.25 14.90 8.31 -92.72 -0.77 14.13 16 50 H 0.04 1.63 6.10 -2.39 -0.01 1.62 16 51 H 0.01 0.55 7.81 -2.39 -0.02 0.54 16 52 H 0.08 2.86 6.89 -2.39 -0.02 2.84 16 53 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -77.32 392.32 3.81 -73.51 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.89 Total: 16.54 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 6.95 Total: 9.69 kcal Atomic # 7 Polarization: -108.59 SS G_CDS: -4.53 Total: -113.12 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -1.53 Total: -35.70 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -77.32 3.81 -73.51 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131682928.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.703 kcal (2) G-P(sol) polarization free energy of solvation -77.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds