Wall clock time and date at job start Tue Mar 31 2020 21:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.51342 * 2 1 4 4 C 1.53273 * 109.51295 * 239.89208 * 2 1 3 5 5 N 1.47167 * 108.57205 * 187.07328 * 4 2 1 6 6 C 1.34769 * 121.08451 * 231.21593 * 5 4 2 7 7 O 1.21277 * 120.00117 * 180.02562 * 6 5 4 8 8 C 1.50702 * 120.00014 * 0.02562 * 6 5 4 9 9 C 1.53003 * 109.47349 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47134 * 180.02562 * 9 8 6 11 11 C 1.53000 * 115.55198 * 34.41306 * 10 9 8 12 12 C 1.52998 * 117.49620 * 248.74752 * 10 9 8 13 13 C 1.52991 * 117.49663 * 180.08564 * 10 9 8 14 14 C 1.47342 * 117.83348 * 51.23400 * 5 4 2 15 15 C 1.52363 * 108.41343 * 310.82329 * 14 5 4 16 16 C 1.54356 * 110.41813 * 173.60453 * 15 14 5 17 17 C 1.54469 * 102.96032 * 152.15634 * 16 15 14 18 18 N 1.47090 * 107.29349 * 338.89902 * 17 16 15 19 19 C 1.36929 * 125.63348 * 178.85044 * 18 17 16 20 20 H 1.07995 * 120.00187 * 170.96462 * 19 18 17 21 21 C 1.38816 * 120.00162 * 350.96718 * 19 18 17 22 22 N 1.31620 * 120.00163 * 164.57809 * 21 19 18 23 23 Si 1.86801 * 119.99596 * 344.30827 * 21 19 18 24 24 H 1.48505 * 109.46863 * 185.78530 * 23 21 19 25 25 H 1.48492 * 109.47371 * 305.78658 * 23 21 19 26 26 H 1.48506 * 109.46983 * 65.78724 * 23 21 19 27 27 C 1.47571 * 108.73706 * 358.58820 * 18 17 16 28 28 O 1.41885 * 111.45173 * 50.06164 * 15 14 5 29 29 H 1.08998 * 109.47189 * 180.10500 * 1 2 3 30 30 H 1.08999 * 109.47156 * 300.10809 * 1 2 3 31 31 H 1.08994 * 109.46818 * 60.10320 * 1 2 3 32 32 H 1.09002 * 109.61941 * 67.34762 * 4 2 1 33 33 H 1.08998 * 109.77437 * 306.88968 * 4 2 1 34 34 H 1.09003 * 109.47113 * 299.99984 * 8 6 5 35 35 H 1.08998 * 109.46889 * 59.99947 * 8 6 5 36 36 H 1.09003 * 109.46730 * 299.99888 * 9 8 6 37 37 H 1.08998 * 109.46723 * 60.00166 * 9 8 6 38 38 H 1.08999 * 109.46717 * 85.58180 * 11 10 9 39 39 H 1.08994 * 109.47637 * 205.58631 * 11 10 9 40 40 H 1.09003 * 109.47351 * 325.58485 * 11 10 9 41 41 H 1.09003 * 117.50268 * 359.97438 * 12 10 9 42 42 H 1.09002 * 117.49965 * 145.02360 * 12 10 9 43 43 H 1.09008 * 117.49823 * 214.97360 * 13 10 9 44 44 H 1.09002 * 117.50180 * 359.97438 * 13 10 9 45 45 H 1.09005 * 109.67076 * 191.09511 * 14 5 4 46 46 H 1.08990 * 109.67709 * 70.55958 * 14 5 4 47 47 H 1.09001 * 110.73153 * 270.73087 * 16 15 14 48 48 H 1.08998 * 110.73086 * 33.85286 * 16 15 14 49 49 H 1.09010 * 110.00244 * 219.40660 * 17 16 15 50 50 H 1.09003 * 109.76255 * 98.25888 * 17 16 15 51 51 H 0.96994 * 119.99898 * 355.00683 * 22 21 19 52 52 H 1.08999 * 110.37596 * 142.41017 * 27 18 17 53 53 H 1.09004 * 110.37466 * 264.64745 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7247 -1.2498 5 7 3.5035 -0.8630 -1.1458 6 6 4.3124 -0.4752 -2.1515 7 8 5.5142 -0.5985 -2.0450 8 6 3.7236 0.1117 -3.4085 9 6 4.8495 0.4647 -4.3826 10 6 4.2517 1.0612 -5.6584 11 6 2.9940 1.9103 -5.4636 12 6 4.3528 0.2322 -6.9404 13 6 5.2223 1.4797 -6.7645 14 6 4.0535 -1.4396 0.0936 15 6 3.4217 -0.7220 1.2799 16 6 3.8434 -1.3953 2.6033 17 6 3.7714 -0.2352 3.6206 18 7 3.8528 1.0203 2.8585 19 6 3.8012 2.2811 3.3902 20 1 4.0148 3.1383 2.7690 21 6 3.4744 2.4574 4.7278 22 7 3.7143 3.6094 5.3175 23 14 2.6873 1.0622 5.6887 24 1 2.3110 1.5440 7.0421 25 1 1.4727 0.5931 4.9749 26 1 3.6526 -0.0594 5.8131 27 6 4.0056 0.6967 1.4268 28 8 2.0081 -0.6775 1.1666 29 1 -0.3633 -1.0276 0.0019 30 1 -0.3633 0.5155 0.8890 31 1 -0.3633 0.5122 -0.8909 32 1 1.7916 -0.1443 -2.1378 33 1 1.5849 -1.7119 -1.3169 34 1 3.0576 -0.6161 -3.8720 35 1 3.1617 1.0122 -3.1604 36 1 5.5159 1.1924 -3.9193 37 1 5.4110 -0.4360 -4.6306 38 1 3.2805 2.9337 -5.2216 39 1 2.4061 1.9049 -6.3813 40 1 2.3993 1.4972 -4.6488 41 1 4.8455 -0.7379 -6.8750 42 1 3.5235 0.2922 -7.6452 43 1 4.9645 2.3599 -7.3538 44 1 6.2867 1.3306 -6.5832 45 1 5.1345 -1.3014 0.1144 46 1 3.8180 -2.5027 0.1398 47 1 3.1473 -2.1904 2.8707 48 1 4.8600 -1.7822 2.5326 49 1 4.6058 -0.2994 4.3192 50 1 2.8270 -0.2788 4.1632 51 1 4.1846 4.3103 4.8396 52 1 3.4440 1.4034 0.8160 53 1 5.0587 0.7064 1.1459 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131692541.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:28 Heat of formation + Delta-G solvation = -40.561964 kcal Electronic energy + Delta-G solvation = -31210.368730 eV Core-core repulsion = 27276.103624 eV Total energy + Delta-G solvation = -3934.265106 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.93926 -40.36914 -39.07251 -38.18438 -35.84331 -35.06823 -33.62704 -33.11926 -31.29048 -30.34845 -29.12899 -28.04933 -27.30575 -25.94156 -24.47778 -23.28254 -23.22199 -22.59316 -21.02277 -20.09293 -19.67986 -19.62828 -18.29286 -18.08281 -17.35309 -17.09541 -16.71266 -16.26788 -16.10918 -15.88249 -15.59746 -15.41973 -15.29283 -14.95382 -14.72546 -14.42656 -14.12848 -13.78463 -13.70732 -13.66466 -13.31282 -13.22837 -13.12956 -13.09834 -13.05364 -12.79515 -12.74544 -12.58705 -12.39664 -12.18981 -12.10686 -11.93439 -11.85135 -11.63339 -11.52986 -11.13753 -11.00669 -10.98114 -10.83217 -10.66435 -10.48680 -9.58062 -9.14959 -8.71130 -5.51916 1.37976 1.48560 1.53934 1.71276 1.82101 2.51329 2.54748 2.84378 3.05014 3.16079 3.39465 3.50745 3.59071 3.71950 3.73750 3.84175 3.92282 3.98676 4.02702 4.12800 4.16888 4.19257 4.24850 4.34474 4.39641 4.42291 4.50936 4.54475 4.61405 4.64975 4.70806 4.75292 4.79579 4.81459 4.85769 4.87562 4.94072 4.98478 5.03877 5.06190 5.09668 5.11717 5.15665 5.22752 5.28579 5.28883 5.33629 5.43559 5.46318 6.03165 6.27238 6.30057 6.76266 7.07048 7.36630 8.02730 8.81702 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016584 B = 0.003018 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.991868 B = 9274.761098 C = 9543.905840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.059 3.941 3 H 0.038 0.962 4 C 0.085 3.915 5 N -0.617 5.617 6 C 0.509 3.491 7 O -0.585 6.585 8 C -0.129 4.129 9 C -0.062 4.062 10 C -0.133 4.133 11 C -0.124 4.124 12 C -0.166 4.166 13 C -0.186 4.186 14 C 0.105 3.895 15 C 0.103 3.897 16 C -0.104 4.104 17 C 0.102 3.898 18 N -0.628 5.628 19 C -0.312 4.312 20 H 0.039 0.961 21 C -0.077 4.077 22 N -0.962 5.962 23 Si 1.113 2.887 24 H -0.311 1.311 25 H -0.285 1.285 26 H -0.249 1.249 27 C 0.121 3.879 28 O -0.367 6.367 29 H 0.081 0.919 30 H 0.044 0.956 31 H 0.103 0.897 32 H 0.126 0.874 33 H 0.104 0.896 34 H 0.127 0.873 35 H 0.112 0.888 36 H 0.047 0.953 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.107 0.893 43 H 0.101 0.899 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.103 0.897 47 H 0.111 0.889 48 H 0.108 0.892 49 H 0.039 0.961 50 H 0.027 0.973 51 H 0.246 0.754 52 H 0.031 0.969 53 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.849 -14.068 -24.970 29.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.001 3.999 3 H 0.056 0.944 4 C -0.037 4.037 5 N -0.350 5.350 6 C 0.299 3.701 7 O -0.465 6.465 8 C -0.168 4.168 9 C -0.100 4.100 10 C -0.133 4.133 11 C -0.180 4.180 12 C -0.203 4.203 13 C -0.223 4.223 14 C -0.019 4.019 15 C 0.061 3.939 16 C -0.142 4.142 17 C -0.022 4.022 18 N -0.355 5.355 19 C -0.441 4.441 20 H 0.057 0.943 21 C -0.270 4.270 22 N -0.606 5.606 23 Si 0.941 3.059 24 H -0.241 1.241 25 H -0.213 1.213 26 H -0.175 1.175 27 C -0.005 4.005 28 O -0.286 6.286 29 H 0.100 0.900 30 H 0.063 0.937 31 H 0.122 0.878 32 H 0.144 0.856 33 H 0.122 0.878 34 H 0.145 0.855 35 H 0.130 0.870 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.111 0.889 42 H 0.126 0.874 43 H 0.119 0.881 44 H 0.104 0.896 45 H 0.104 0.896 46 H 0.121 0.879 47 H 0.130 0.870 48 H 0.127 0.873 49 H 0.057 0.943 50 H 0.045 0.955 51 H 0.055 0.945 52 H 0.049 0.951 53 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -6.970 -14.524 -23.333 28.354 hybrid contribution 1.435 1.718 -1.206 2.543 sum -5.536 -12.806 -24.538 28.227 Atomic orbital electron populations 1.21711 0.90053 1.04104 1.03337 1.22750 0.97151 0.94888 0.85137 0.94383 1.22701 0.78168 1.03568 0.99285 1.48355 1.08101 1.62362 1.16173 1.21483 0.86272 0.76684 0.85630 1.90680 1.16815 1.57016 1.82006 1.21832 1.00243 1.03306 0.91410 1.20766 0.96240 1.00020 0.93023 1.21498 0.99091 1.02945 0.89737 1.21522 0.94759 0.98601 1.03148 1.23239 1.02720 0.95346 0.98951 1.23101 0.97004 0.99699 1.02492 1.21947 0.99513 0.98277 0.82132 1.22141 0.82132 0.93892 0.95700 1.22566 1.03818 0.96846 0.90999 1.22164 0.97979 0.86313 0.95723 1.44846 1.86895 1.01276 1.02481 1.20003 1.44906 0.83487 0.95685 0.94275 1.27154 1.00706 1.03753 0.95360 1.71002 1.44502 1.06505 1.38608 0.83334 0.76785 0.72749 0.73063 1.24058 1.21330 1.17450 1.22075 0.96909 0.96037 0.85491 1.87803 1.19217 1.76902 1.44682 0.90027 0.93685 0.87790 0.85634 0.87766 0.85530 0.86968 0.93406 0.92111 0.92785 0.91234 0.90394 0.88946 0.87442 0.88053 0.89619 0.89622 0.87922 0.87040 0.87334 0.94320 0.95525 0.94474 0.95088 0.96310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 9.57 71.98 0.69 -1.77 16 2 C 0.06 1.43 3.20 30.69 0.10 1.53 16 3 H 0.04 1.16 6.25 -2.39 -0.01 1.15 16 4 C 0.08 1.39 5.81 86.34 0.50 1.89 16 5 N -0.62 -14.35 2.96 -818.67 -2.42 -16.76 16 6 C 0.51 12.78 7.71 87.66 0.68 13.46 16 7 O -0.59 -19.98 15.47 -3.02 -0.05 -20.03 16 8 C -0.13 -2.06 3.08 29.85 0.09 -1.97 16 9 C -0.06 -1.18 4.69 30.60 0.14 -1.03 16 10 C -0.13 -1.90 2.46 -52.18 -0.13 -2.02 16 11 C -0.12 -1.40 9.49 71.98 0.68 -0.72 16 12 C -0.17 -2.01 9.83 30.62 0.30 -1.71 16 13 C -0.19 -2.67 9.97 30.62 0.31 -2.36 16 14 C 0.10 2.77 5.30 86.01 0.46 3.23 16 15 C 0.10 3.35 0.83 -10.17 -0.01 3.34 16 16 C -0.10 -3.29 6.12 31.55 0.19 -3.09 16 17 C 0.10 4.46 4.64 86.77 0.40 4.87 16 18 N -0.63 -32.44 3.34 -692.70 -2.31 -34.76 16 19 C -0.31 -19.25 10.56 84.04 0.89 -18.37 16 20 H 0.04 2.62 8.06 -2.91 -0.02 2.60 16 21 C -0.08 -4.82 5.50 84.86 0.47 -4.35 16 22 N -0.96 -64.33 13.70 21.65 0.30 -64.03 16 23 Si 1.11 56.26 24.53 68.60 1.68 57.94 16 24 H -0.31 -16.03 7.11 99.48 0.71 -15.32 16 25 H -0.29 -13.82 6.83 99.48 0.68 -13.14 16 26 H -0.25 -11.05 5.44 99.48 0.54 -10.50 16 27 C 0.12 5.19 6.18 86.55 0.53 5.72 16 28 O -0.37 -11.69 9.92 -148.95 -1.48 -13.17 16 29 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.13 1.21 6.05 -2.39 -0.01 1.19 16 33 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.13 1.24 8.01 -2.39 -0.02 1.22 16 35 H 0.11 1.52 5.98 -2.39 -0.01 1.50 16 36 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 37 H 0.06 1.26 7.86 -2.39 -0.02 1.24 16 38 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.07 0.62 7.90 -2.39 -0.02 0.61 16 40 H 0.08 0.69 5.59 -2.39 -0.01 0.68 16 41 H 0.09 1.14 8.05 -2.39 -0.02 1.12 16 42 H 0.11 1.00 8.05 -2.39 -0.02 0.98 16 43 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 44 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.09 2.60 6.86 -2.38 -0.02 2.58 16 46 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 47 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 48 H 0.11 2.88 7.99 -2.39 -0.02 2.86 16 49 H 0.04 1.74 6.82 -2.38 -0.02 1.73 16 50 H 0.03 1.24 3.73 -2.39 -0.01 1.23 16 51 H 0.25 16.58 8.73 -92.71 -0.81 15.77 16 52 H 0.03 1.40 6.09 -2.39 -0.01 1.38 16 53 H 0.02 0.86 7.82 -2.38 -0.02 0.84 16 Total: -1.00 -83.07 395.47 2.67 -80.40 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 0.65 Total: 13.78 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 6.29 Total: -3.37 kcal Atomic # 7 Polarization: -111.12 SS G_CDS: -4.44 Total: -115.55 kcal Atomic # 8 Polarization: -31.68 SS G_CDS: -1.52 Total: -33.20 kcal Atomic # 14 Polarization: 56.26 SS G_CDS: 1.68 Total: 57.94 kcal Total: -83.07 2.67 -80.40 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131692541.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.838 kcal (2) G-P(sol) polarization free energy of solvation -83.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds