Wall clock time and date at job start Tue Mar 31 2020 21:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.50792 * 2 1 4 4 C 1.53280 * 109.55077 * 120.12349 * 2 1 3 5 5 N 1.47170 * 108.52065 * 173.03068 * 4 2 1 6 6 C 1.34785 * 121.07701 * 128.67256 * 5 4 2 7 7 O 1.21281 * 120.00205 * 180.02562 * 6 5 4 8 8 C 1.50701 * 120.00003 * 0.02562 * 6 5 4 9 9 C 1.53004 * 109.47066 * 180.02562 * 8 6 5 10 10 C 1.52995 * 109.46760 * 179.97438 * 9 8 6 11 11 C 1.53000 * 115.55464 * 34.41727 * 10 9 8 12 12 C 1.53000 * 117.49774 * 248.74558 * 10 9 8 13 13 C 1.52998 * 117.49553 * 180.08765 * 10 9 8 14 14 C 1.47320 * 117.84856 * 308.69516 * 5 4 2 15 15 C 1.52362 * 108.46571 * 49.13081 * 14 5 4 16 16 C 1.54363 * 110.41525 * 73.70362 * 15 14 5 17 17 C 1.54469 * 102.87855 * 152.35347 * 16 15 14 18 18 N 1.47086 * 107.29487 * 338.51408 * 17 16 15 19 19 C 1.36940 * 125.62726 * 178.95584 * 18 17 16 20 20 H 1.07998 * 119.99851 * 180.02562 * 19 18 17 21 21 C 1.38811 * 119.99974 * 0.03021 * 19 18 17 22 22 N 1.31616 * 120.00374 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99863 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47184 * 59.99576 * 23 21 19 25 25 H 1.48498 * 109.47156 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47135 * 299.99535 * 23 21 19 27 27 C 1.47561 * 108.73903 * 358.99559 * 18 17 16 28 28 O 1.41872 * 111.48389 * 310.13891 * 15 14 5 29 29 H 1.08998 * 109.47110 * 180.09879 * 1 2 3 30 30 H 1.09003 * 109.47425 * 300.10302 * 1 2 3 31 31 H 1.09004 * 109.47178 * 60.10000 * 1 2 3 32 32 H 1.09007 * 109.63103 * 292.73905 * 4 2 1 33 33 H 1.08997 * 109.63351 * 53.12570 * 4 2 1 34 34 H 1.09000 * 109.47148 * 300.00075 * 8 6 5 35 35 H 1.09000 * 109.47168 * 59.99859 * 8 6 5 36 36 H 1.08995 * 109.46848 * 299.99618 * 9 8 6 37 37 H 1.09000 * 109.46671 * 60.00237 * 9 8 6 38 38 H 1.08998 * 109.47098 * 85.57564 * 11 10 9 39 39 H 1.08999 * 109.47429 * 205.58156 * 11 10 9 40 40 H 1.09000 * 109.46807 * 325.58470 * 11 10 9 41 41 H 1.08997 * 117.50357 * 0.02562 * 12 10 9 42 42 H 1.09005 * 117.49920 * 145.02795 * 12 10 9 43 43 H 1.09004 * 117.49902 * 214.97835 * 13 10 9 44 44 H 1.08998 * 117.50349 * 359.97438 * 13 10 9 45 45 H 1.08995 * 109.63370 * 289.44345 * 14 5 4 46 46 H 1.09000 * 109.63800 * 168.82477 * 14 5 4 47 47 H 1.09007 * 110.72978 * 34.00869 * 16 15 14 48 48 H 1.08995 * 110.73164 * 270.70183 * 16 15 14 49 49 H 1.08999 * 109.87633 * 219.09195 * 17 16 15 50 50 H 1.09000 * 109.87602 * 97.93611 * 17 16 15 51 51 H 0.97001 * 120.00283 * 180.02562 * 22 21 19 52 52 H 1.09003 * 110.37908 * 142.15389 * 27 18 17 53 53 H 1.09008 * 110.37665 * 264.38340 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0429 -0.7249 1.2494 5 7 3.5047 -0.8598 1.1445 6 6 4.3133 -0.4691 2.1495 7 8 5.5154 -0.5888 2.0421 8 6 3.7238 0.1166 3.4067 9 6 4.8495 0.4746 4.3791 10 6 4.2509 1.0697 5.6552 11 6 2.9036 0.4869 6.0863 12 6 4.4963 2.5557 5.9242 13 6 5.2214 1.4966 6.7582 14 6 4.0555 -1.4353 -0.0948 15 6 3.4214 -0.7212 -1.2819 16 6 4.0036 0.7009 -1.4286 17 6 3.8558 0.9792 -2.9408 18 7 3.7467 -0.3228 -3.6164 19 6 3.5816 -0.5115 -4.9626 20 1 3.5115 -1.5121 -5.3630 21 6 3.5043 0.5832 -5.8126 22 7 3.5893 1.8026 -5.3247 23 14 3.2798 0.3256 -7.6491 24 1 2.0130 -0.4094 -7.8946 25 1 3.2269 1.6437 -8.3309 26 1 4.4204 -0.4622 -8.1816 27 6 3.8436 -1.3919 -2.6039 28 8 2.0081 -0.6765 -1.1670 29 1 -0.3633 -1.0276 0.0018 30 1 -0.3634 0.5154 0.8891 31 1 -0.3634 0.5123 -0.8909 32 1 1.7915 -0.1457 2.1379 33 1 1.5850 -1.7119 1.3140 34 1 3.1588 1.0152 3.1587 35 1 3.0604 -0.6131 3.8710 36 1 5.4147 -0.4238 4.6272 37 1 5.5125 1.2044 3.9145 38 1 3.0699 -0.4091 6.6844 39 1 2.3617 1.2239 6.6790 40 1 2.3192 0.2304 5.2027 41 1 5.0838 3.1095 5.1920 42 1 3.6981 3.1181 6.4088 43 1 4.8999 1.3626 7.7911 44 1 6.2863 1.3531 6.5751 45 1 3.8221 -2.4990 -0.1399 46 1 5.1360 -1.2930 -0.1161 47 1 5.0527 0.7206 -1.1333 48 1 3.4241 1.4170 -0.8460 49 1 4.7323 1.5142 -3.3065 50 1 2.9568 1.5678 -3.1231 51 1 3.5350 2.5675 -5.9186 52 1 3.1649 -2.2090 -2.8485 53 1 4.8680 -1.7580 -2.5354 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131692542.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:32 Heat of formation + Delta-G solvation = -46.097170 kcal Electronic energy + Delta-G solvation = -30893.426719 eV Core-core repulsion = 26958.921589 eV Total energy + Delta-G solvation = -3934.505130 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.84953 -40.26201 -39.01743 -37.94788 -35.78680 -34.82372 -33.40706 -32.83575 -31.11321 -30.11188 -29.05106 -27.77050 -27.28014 -26.12033 -24.56958 -23.25605 -23.12714 -22.05055 -20.95210 -20.04366 -19.61939 -18.96769 -18.23537 -17.90285 -17.01779 -16.89493 -16.71266 -16.17451 -16.04607 -15.63815 -15.59300 -15.16961 -15.05817 -14.97870 -14.32329 -14.05998 -14.03503 -13.77467 -13.65710 -13.59118 -13.30042 -13.09625 -13.05333 -12.98158 -12.79500 -12.74926 -12.72610 -12.37744 -12.25009 -12.08797 -12.06742 -12.04238 -11.90070 -11.86165 -11.72912 -11.48283 -10.97617 -10.90267 -10.73999 -10.70888 -10.45066 -9.52099 -8.92783 -7.85440 -5.21485 1.44539 1.49003 1.54929 1.58855 1.84802 2.48667 2.63065 2.87236 3.32632 3.38571 3.50439 3.59324 3.75212 3.84056 3.87820 3.93485 3.96472 4.04477 4.07163 4.19181 4.24298 4.30131 4.38613 4.41793 4.44988 4.48202 4.62312 4.67117 4.73889 4.75552 4.79286 4.82097 4.85223 4.92098 4.94812 4.99374 5.05461 5.06664 5.12658 5.14913 5.20421 5.26198 5.30614 5.31522 5.37140 5.41552 5.52401 5.56381 5.68560 6.15855 6.34959 6.41469 7.07454 7.11677 7.74062 8.39231 9.25363 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.020664 B = 0.002600 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.715400 B =10768.100973 C =11088.250560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.057 3.943 3 H 0.052 0.948 4 C 0.083 3.917 5 N -0.613 5.613 6 C 0.509 3.491 7 O -0.586 6.586 8 C -0.128 4.128 9 C -0.063 4.063 10 C -0.129 4.129 11 C -0.122 4.122 12 C -0.178 4.178 13 C -0.181 4.181 14 C 0.106 3.894 15 C 0.111 3.889 16 C -0.149 4.149 17 C 0.199 3.801 18 N -0.621 5.621 19 C -0.241 4.241 20 H 0.085 0.915 21 C -0.069 4.069 22 N -0.954 5.954 23 Si 0.983 3.017 24 H -0.276 1.276 25 H -0.295 1.295 26 H -0.276 1.276 27 C 0.145 3.855 28 O -0.371 6.371 29 H 0.072 0.928 30 H 0.108 0.892 31 H 0.045 0.955 32 H 0.132 0.868 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.128 0.872 36 H 0.059 0.941 37 H 0.049 0.951 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.105 0.895 43 H 0.105 0.895 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.085 0.915 47 H 0.065 0.935 48 H 0.074 0.926 49 H 0.003 0.997 50 H 0.009 0.991 51 H 0.246 0.754 52 H 0.053 0.947 53 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.347 -3.347 26.581 27.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.001 4.001 3 H 0.070 0.930 4 C -0.039 4.039 5 N -0.346 5.346 6 C 0.300 3.700 7 O -0.466 6.466 8 C -0.167 4.167 9 C -0.101 4.101 10 C -0.129 4.129 11 C -0.178 4.178 12 C -0.215 4.215 13 C -0.218 4.218 14 C -0.018 4.018 15 C 0.069 3.931 16 C -0.187 4.187 17 C 0.074 3.926 18 N -0.347 5.347 19 C -0.370 4.370 20 H 0.103 0.897 21 C -0.261 4.261 22 N -0.603 5.603 23 Si 0.810 3.190 24 H -0.201 1.201 25 H -0.221 1.221 26 H -0.201 1.201 27 C 0.019 3.981 28 O -0.291 6.291 29 H 0.091 0.909 30 H 0.127 0.873 31 H 0.064 0.936 32 H 0.149 0.851 33 H 0.114 0.886 34 H 0.132 0.868 35 H 0.146 0.854 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.104 0.896 45 H 0.106 0.894 46 H 0.103 0.897 47 H 0.083 0.917 48 H 0.092 0.908 49 H 0.021 0.979 50 H 0.027 0.973 51 H 0.055 0.945 52 H 0.071 0.929 53 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.860 -3.379 26.218 27.077 hybrid contribution 0.591 0.513 -1.499 1.691 sum -5.269 -2.866 24.720 25.437 Atomic orbital electron populations 1.21715 0.90331 1.03742 1.03461 1.22804 0.96975 0.95371 0.84960 0.93038 1.22714 0.78120 1.03395 0.99680 1.48315 1.08079 1.62274 1.15937 1.21522 0.86245 0.76716 0.85495 1.90685 1.16860 1.57154 1.81911 1.21843 1.00216 1.03497 0.91158 1.20769 0.96271 1.00406 0.92650 1.21537 0.98220 0.97049 0.96107 1.21518 0.93178 1.00944 1.02187 1.23237 1.03600 0.91383 1.03254 1.23094 0.97828 1.04037 0.96796 1.21834 0.99405 0.97861 0.82686 1.22039 0.81866 0.94572 0.94576 1.23152 1.00446 0.97795 0.97305 1.20746 0.97068 0.87132 0.87659 1.44700 1.85725 1.01635 1.02641 1.19447 1.42109 0.93295 0.82150 0.89726 1.25703 1.02593 0.95036 1.02817 1.70198 1.58034 0.97574 1.34512 0.85092 0.78341 0.76300 0.79231 1.20146 1.22069 1.20149 1.21541 0.98174 0.91754 0.86626 1.87872 1.19423 1.77261 1.44499 0.90940 0.87342 0.93553 0.85053 0.88616 0.86758 0.85391 0.92244 0.93188 0.91866 0.91656 0.90194 0.89732 0.87628 0.87690 0.89649 0.89423 0.89658 0.91664 0.90766 0.97905 0.97317 0.94469 0.92890 0.93615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.57 71.98 0.69 -1.81 16 2 C 0.06 1.37 3.20 30.69 0.10 1.47 16 3 H 0.05 1.38 6.25 -2.39 -0.01 1.36 16 4 C 0.08 1.39 5.82 86.35 0.50 1.90 16 5 N -0.61 -14.67 2.95 -818.68 -2.42 -17.09 16 6 C 0.51 12.59 7.71 87.66 0.68 13.26 16 7 O -0.59 -19.89 15.47 -3.03 -0.05 -19.94 16 8 C -0.13 -1.90 3.08 29.85 0.09 -1.81 16 9 C -0.06 -1.11 4.69 30.59 0.14 -0.97 16 10 C -0.13 -1.70 2.46 -52.18 -0.13 -1.82 16 11 C -0.12 -1.04 9.49 71.98 0.68 -0.35 16 12 C -0.18 -2.35 9.82 30.62 0.30 -2.05 16 13 C -0.18 -2.40 9.97 30.62 0.31 -2.10 16 14 C 0.11 3.15 5.30 86.01 0.46 3.61 16 15 C 0.11 4.03 0.84 -10.16 -0.01 4.02 16 16 C -0.15 -6.05 5.88 31.56 0.19 -5.86 16 17 C 0.20 10.60 5.38 86.77 0.47 11.06 16 18 N -0.62 -33.74 3.40 -692.73 -2.36 -36.09 16 19 C -0.24 -14.09 10.28 84.03 0.86 -13.23 16 20 H 0.08 4.68 7.83 -2.91 -0.02 4.65 16 21 C -0.07 -4.07 5.49 84.86 0.47 -3.61 16 22 N -0.95 -59.76 10.31 21.65 0.22 -59.54 16 23 Si 0.98 47.20 29.55 68.60 2.03 49.23 16 24 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 25 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 26 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 27 C 0.14 6.23 6.41 86.56 0.56 6.79 16 28 O -0.37 -13.05 9.92 -148.95 -1.48 -14.53 16 29 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.13 1.14 6.05 -2.38 -0.01 1.13 16 33 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.11 1.31 7.67 -2.39 -0.02 1.29 16 35 H 0.13 1.14 6.31 -2.39 -0.02 1.13 16 36 H 0.06 1.21 8.10 -2.39 -0.02 1.19 16 37 H 0.05 1.10 7.86 -2.39 -0.02 1.08 16 38 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.06 0.48 7.90 -2.39 -0.02 0.46 16 40 H 0.08 0.46 5.59 -2.39 -0.01 0.45 16 41 H 0.08 1.27 8.05 -2.39 -0.02 1.26 16 42 H 0.11 1.12 8.05 -2.38 -0.02 1.10 16 43 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 44 H 0.08 1.26 8.14 -2.39 -0.02 1.25 16 45 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 46 H 0.09 2.84 6.85 -2.39 -0.02 2.83 16 47 H 0.06 2.64 7.82 -2.38 -0.02 2.62 16 48 H 0.07 2.80 6.10 -2.39 -0.01 2.78 16 49 H 0.00 0.16 7.50 -2.39 -0.02 0.15 16 50 H 0.01 0.51 7.38 -2.39 -0.02 0.50 16 51 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 52 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 53 H 0.05 1.89 8.00 -2.38 -0.02 1.87 16 Total: -1.00 -77.94 403.23 3.17 -74.77 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.88 Total: 14.70 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 6.35 Total: 8.50 kcal Atomic # 7 Polarization: -108.17 SS G_CDS: -4.55 Total: -112.72 kcal Atomic # 8 Polarization: -32.95 SS G_CDS: -1.52 Total: -34.47 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Total: -77.94 3.17 -74.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131692542.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.673 kcal (2) G-P(sol) polarization free energy of solvation -77.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds