Wall clock time and date at job start Tue Mar 31 2020 20:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50698 * 120.00315 * 2 1 4 4 C 1.53001 * 109.47421 * 120.39393 * 3 2 1 5 5 C 1.50694 * 109.54306 * 182.02561 * 4 3 2 6 6 O 1.21279 * 119.99868 * 113.87907 * 5 4 3 7 7 N 1.34777 * 120.00657 * 293.87911 * 5 4 3 8 8 C 1.46499 * 120.00508 * 175.23205 * 7 5 4 9 9 H 1.08996 * 109.49170 * 35.00303 * 8 7 5 10 10 C 1.53038 * 109.49584 * 155.06122 * 8 7 5 11 11 C 1.53110 * 109.50126 * 58.62402 * 10 8 7 12 12 C 1.53195 * 109.32877 * 61.33917 * 11 10 8 13 13 H 1.08999 * 109.58924 * 65.15752 * 12 11 10 14 14 C 1.53002 * 109.69964 * 185.50517 * 12 11 10 15 15 N 1.46920 * 108.77884 * 305.36237 * 12 11 10 16 16 C 1.36934 * 120.63376 * 233.59114 * 15 12 11 17 17 H 1.08004 * 119.99998 * 28.68713 * 16 15 12 18 18 C 1.38813 * 120.00201 * 208.68291 * 16 15 12 19 19 N 1.31615 * 119.99572 * 16.69893 * 18 16 15 20 20 Si 1.86795 * 120.00358 * 196.68913 * 18 16 15 21 21 H 1.48506 * 109.47081 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47182 * 120.00153 * 20 18 16 23 23 H 1.48491 * 109.47466 * 240.00496 * 20 18 16 24 24 C 1.46923 * 118.73699 * 53.60972 * 15 12 11 25 25 C 1.53171 * 109.54151 * 302.20706 * 4 3 2 26 26 C 1.53096 * 109.16084 * 176.84520 * 25 4 3 27 27 O 1.42902 * 109.41637 * 302.38634 * 26 25 4 28 28 C 1.42905 * 114.09167 * 61.16033 * 27 26 25 29 29 C 1.53087 * 109.41568 * 298.84105 * 28 27 26 30 30 H 1.07998 * 119.99715 * 359.97438 * 1 2 3 31 31 H 1.08003 * 120.00276 * 180.02562 * 1 2 3 32 32 H 1.08008 * 119.99846 * 180.02562 * 2 1 3 33 33 H 1.08997 * 109.47045 * 0.38898 * 3 2 1 34 34 H 1.09010 * 109.47314 * 240.39439 * 3 2 1 35 35 H 0.97011 * 119.99339 * 355.23188 * 7 5 4 36 36 H 1.09003 * 109.45716 * 178.60693 * 10 8 7 37 37 H 1.08996 * 109.46528 * 298.56760 * 10 8 7 38 38 H 1.08994 * 109.48536 * 301.38109 * 11 10 8 39 39 H 1.09004 * 109.51454 * 181.31192 * 11 10 8 40 40 H 1.08998 * 109.47203 * 179.36060 * 14 12 11 41 41 H 1.08997 * 109.47297 * 299.36349 * 14 12 11 42 42 H 1.09003 * 109.47322 * 59.36007 * 14 12 11 43 43 H 0.97004 * 119.99793 * 179.97438 * 19 18 16 44 44 H 1.09003 * 109.58951 * 186.61022 * 24 15 12 45 45 H 1.08997 * 109.58793 * 66.18114 * 24 15 12 46 46 H 1.08998 * 109.52304 * 56.94133 * 25 4 3 47 47 H 1.09000 * 109.52249 * 296.75227 * 25 4 3 48 48 H 1.09004 * 109.47987 * 182.40669 * 26 25 4 49 49 H 1.08998 * 109.47931 * 62.37417 * 26 25 4 50 50 H 1.09001 * 109.48311 * 58.82634 * 28 27 26 51 51 H 1.08998 * 109.47724 * 178.85804 * 28 27 26 52 52 H 1.08998 * 109.52332 * 297.70368 * 29 28 27 53 53 H 1.09007 * 109.52418 * 177.51997 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.9506 1.3818 1.2442 5 6 3.6671 2.7072 1.2714 6 8 3.4173 3.5139 2.1419 7 7 4.5857 2.9963 0.3285 8 6 5.2062 4.3229 0.2925 9 1 5.3313 4.6936 1.3099 10 6 6.5734 4.2290 -0.3886 11 6 6.4012 3.6773 -1.8065 12 6 5.5201 4.6318 -2.6185 13 1 6.0327 5.5856 -2.7429 14 6 5.2294 4.0229 -3.9917 15 7 4.2584 4.8412 -1.8955 16 6 3.0557 4.6276 -2.5145 17 1 2.9801 3.9036 -3.3123 18 6 1.9338 5.3416 -2.1165 19 7 2.0707 6.4344 -1.3959 20 14 0.2298 4.7518 -2.6041 21 1 0.3474 3.5082 -3.4072 22 1 -0.5676 4.4774 -1.3817 23 1 -0.4451 5.8002 -3.4104 24 6 4.3115 5.2847 -0.4958 25 6 2.0850 1.2413 2.5001 26 6 2.9888 1.2402 3.7358 27 8 3.9377 0.1770 3.6293 28 6 4.8061 0.2811 2.4992 29 6 3.9754 0.2438 1.2139 30 1 -0.5399 0.9353 0.0004 31 1 -0.5401 -0.9353 0.0004 32 1 1.8500 -0.9354 -0.0004 33 1 1.3553 2.1335 0.0070 34 1 2.6849 1.3659 -0.8936 35 1 4.8359 2.3259 -0.3265 36 1 7.0237 5.2205 -0.4372 37 1 7.2198 3.5645 0.1845 38 1 5.9283 2.6964 -1.7599 39 1 7.3772 3.5884 -2.2836 40 1 4.5931 4.6997 -4.5619 41 1 6.1665 3.8683 -4.5264 42 1 4.7214 3.0669 -3.8651 43 1 1.2868 6.9336 -1.1181 44 1 3.3071 5.2793 -0.0723 45 1 4.7255 6.2918 -0.4470 46 1 1.5277 0.3056 2.4555 47 1 1.3892 2.0783 2.5584 48 1 2.3818 1.0975 4.6299 49 1 3.5154 2.1922 3.8018 50 1 5.3566 1.2206 2.5491 51 1 5.5084 -0.5524 2.5025 52 1 3.4563 -0.7121 1.1434 53 1 4.6316 0.3673 0.3523 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132454480.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:04 Heat of formation + Delta-G solvation = -70.485595 kcal Electronic energy + Delta-G solvation = -32974.028896 eV Core-core repulsion = 29038.466204 eV Total energy + Delta-G solvation = -3935.562692 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -42.02742 -40.01578 -38.67761 -37.02517 -35.80059 -34.51837 -33.61792 -32.34824 -31.78272 -31.55503 -28.79779 -27.85413 -26.78939 -24.93740 -24.57770 -23.88956 -23.26076 -22.05163 -21.06073 -20.37985 -20.01589 -18.21703 -17.90322 -17.17652 -17.11992 -16.97583 -16.60826 -16.14274 -15.82538 -15.77329 -15.55378 -15.48410 -15.10723 -14.91770 -14.66902 -14.46092 -14.11546 -13.96527 -13.65663 -13.45113 -13.26275 -13.16371 -13.02292 -12.88386 -12.71870 -12.63481 -12.53381 -12.40400 -12.29396 -12.10164 -12.06256 -11.97864 -11.59371 -11.53892 -11.45202 -11.19746 -11.03424 -10.69284 -10.54411 -10.37501 -10.14263 -9.86288 -8.57705 -7.82552 -5.25519 1.34100 1.36305 1.40336 1.47560 1.78914 2.37688 2.48838 2.94391 3.33741 3.50496 3.60080 3.63552 3.75707 3.97002 4.02035 4.06776 4.11094 4.18122 4.22957 4.26721 4.31321 4.49869 4.55344 4.61476 4.64030 4.66358 4.67181 4.75049 4.79907 4.83640 4.91931 4.97311 4.98367 5.01387 5.05085 5.08030 5.08480 5.12633 5.15571 5.25445 5.28034 5.34028 5.58145 5.62419 5.70004 5.71352 5.74538 5.77841 5.91532 6.22450 6.43724 6.72937 7.18752 7.42072 7.93761 8.44520 9.22963 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.010263 B = 0.005850 C = 0.004602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2727.657442 B = 4785.524510 C = 6082.471888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.142 4.142 3 C -0.076 4.076 4 C -0.064 4.064 5 C 0.517 3.483 6 O -0.588 6.588 7 N -0.687 5.687 8 C 0.128 3.872 9 H 0.060 0.940 10 C -0.110 4.110 11 C -0.117 4.117 12 C 0.153 3.847 13 H 0.010 0.990 14 C -0.128 4.128 15 N -0.591 5.591 16 C -0.225 4.225 17 H 0.078 0.922 18 C -0.053 4.053 19 N -0.937 5.937 20 Si 0.937 3.063 21 H -0.256 1.256 22 H -0.305 1.305 23 H -0.299 1.299 24 C 0.174 3.826 25 C -0.123 4.123 26 C 0.058 3.942 27 O -0.391 6.391 28 C 0.055 3.945 29 C -0.137 4.137 30 H 0.072 0.928 31 H 0.123 0.877 32 H 0.143 0.857 33 H 0.032 0.968 34 H 0.083 0.917 35 H 0.405 0.595 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.033 0.967 41 H 0.074 0.926 42 H 0.054 0.946 43 H 0.240 0.760 44 H 0.045 0.955 45 H -0.009 1.009 46 H 0.095 0.905 47 H 0.051 0.949 48 H 0.103 0.897 49 H 0.043 0.957 50 H 0.033 0.967 51 H 0.125 0.875 52 H 0.106 0.894 53 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.032 -17.208 2.608 19.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.159 4.159 3 C -0.114 4.114 4 C -0.067 4.067 5 C 0.304 3.696 6 O -0.469 6.469 7 N -0.337 5.337 8 C 0.022 3.978 9 H 0.078 0.922 10 C -0.148 4.148 11 C -0.156 4.156 12 C 0.048 3.952 13 H 0.028 0.972 14 C -0.185 4.185 15 N -0.314 5.314 16 C -0.356 4.356 17 H 0.096 0.904 18 C -0.247 4.247 19 N -0.585 5.585 20 Si 0.768 3.232 21 H -0.179 1.179 22 H -0.233 1.233 23 H -0.227 1.227 24 C 0.047 3.953 25 C -0.161 4.161 26 C -0.019 4.019 27 O -0.310 6.310 28 C -0.022 4.022 29 C -0.174 4.174 30 H 0.091 0.909 31 H 0.141 0.859 32 H 0.160 0.840 33 H 0.051 0.949 34 H 0.101 0.899 35 H 0.243 0.757 36 H 0.087 0.913 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.108 0.892 40 H 0.052 0.948 41 H 0.093 0.907 42 H 0.073 0.927 43 H 0.049 0.951 44 H 0.063 0.937 45 H 0.009 0.991 46 H 0.113 0.887 47 H 0.070 0.930 48 H 0.121 0.879 49 H 0.062 0.938 50 H 0.051 0.949 51 H 0.143 0.857 52 H 0.124 0.876 53 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.771 -16.678 3.336 18.700 hybrid contribution -1.633 1.248 -0.562 2.131 sum 6.138 -15.430 2.774 16.836 Atomic orbital electron populations 1.24000 0.96317 1.01987 1.01310 1.22911 0.95832 0.97675 0.99496 1.20651 0.98056 0.96274 0.96400 1.20780 0.96402 0.92409 0.97080 1.20888 0.79027 0.88949 0.80688 1.90614 1.65660 1.51949 1.38696 1.45722 1.41425 1.14811 1.31783 1.21431 0.94098 0.83900 0.98419 0.92235 1.21666 0.93990 1.02413 0.96735 1.21948 1.00168 0.98735 0.94730 1.20778 0.86822 0.95399 0.92236 0.97181 1.21720 1.00982 1.00184 0.95650 1.44236 1.01207 1.78776 1.07221 1.19409 0.86124 1.14222 1.15822 0.90410 1.25620 1.01255 0.95946 1.01900 1.70176 1.28018 1.16890 1.43383 0.85625 0.82320 0.78368 0.76905 1.17939 1.23289 1.22659 1.20817 0.97822 0.91896 0.84811 1.21983 0.97917 1.02693 0.93540 1.22657 0.90892 0.90224 0.98098 1.87860 1.48270 1.47886 1.47003 1.22763 0.92119 1.02371 0.84913 1.22347 0.97399 0.98194 0.99464 0.90940 0.85898 0.83963 0.94896 0.89904 0.75726 0.91285 0.89605 0.91581 0.89217 0.94787 0.90682 0.92709 0.95088 0.93664 0.99072 0.88651 0.93026 0.87872 0.93824 0.94890 0.85678 0.87567 0.88605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.60 14.32 67.78 0.97 -3.63 16 2 C -0.14 -3.17 7.46 25.65 0.19 -2.98 16 3 C -0.08 -2.24 4.71 29.85 0.14 -2.10 16 4 C -0.06 -1.78 0.44 -52.81 -0.02 -1.80 16 5 C 0.52 18.66 5.02 87.66 0.44 19.10 16 6 O -0.59 -26.49 13.73 -3.03 -0.04 -26.53 16 7 N -0.69 -22.59 4.79 -442.18 -2.12 -24.70 16 8 C 0.13 4.72 2.85 45.07 0.13 4.85 16 9 H 0.06 2.38 7.51 -2.39 -0.02 2.36 16 10 C -0.11 -3.04 5.59 30.64 0.17 -2.87 16 11 C -0.12 -3.06 5.21 30.70 0.16 -2.90 16 12 C 0.15 5.51 3.49 44.98 0.16 5.66 16 13 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 14 C -0.13 -4.09 7.95 71.98 0.57 -3.52 16 15 N -0.59 -27.11 2.91 -675.24 -1.96 -29.07 16 16 C -0.23 -11.52 8.60 84.03 0.72 -10.80 16 17 H 0.08 3.80 6.21 -2.91 -0.02 3.78 16 18 C -0.05 -2.95 4.92 84.86 0.42 -2.53 16 19 N -0.94 -57.44 11.22 21.65 0.24 -57.20 16 20 Si 0.94 45.78 29.59 68.60 2.03 47.81 16 21 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 22 H -0.30 -15.50 7.11 99.48 0.71 -14.79 16 23 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 24 C 0.17 8.41 4.90 86.36 0.42 8.83 16 25 C -0.12 -3.54 4.33 30.68 0.13 -3.41 16 26 C 0.06 1.64 6.56 72.01 0.47 2.11 16 27 O -0.39 -10.19 10.77 -148.98 -1.60 -11.79 16 28 C 0.05 1.16 6.62 72.01 0.48 1.63 16 29 C -0.14 -2.67 4.64 30.68 0.14 -2.52 16 30 H 0.07 2.01 7.83 -2.91 -0.02 1.98 16 31 H 0.12 2.15 8.06 -2.91 -0.02 2.13 16 32 H 0.14 2.28 6.96 -2.91 -0.02 2.26 16 33 H 0.03 1.24 7.78 -2.39 -0.02 1.22 16 34 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 35 H 0.41 11.14 5.69 -92.70 -0.53 10.61 16 36 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.07 1.61 6.40 -2.39 -0.02 1.60 16 39 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 40 H 0.03 1.25 7.62 -2.39 -0.02 1.23 16 41 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.05 1.71 7.44 -2.39 -0.02 1.70 16 43 H 0.24 14.68 8.31 -92.71 -0.77 13.91 16 44 H 0.04 2.65 6.09 -2.39 -0.01 2.64 16 45 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 46 H 0.10 2.33 7.05 -2.39 -0.02 2.31 16 47 H 0.05 1.76 7.94 -2.39 -0.02 1.74 16 48 H 0.10 2.54 8.14 -2.38 -0.02 2.52 16 49 H 0.04 1.50 6.04 -2.39 -0.01 1.48 16 50 H 0.03 0.81 7.38 -2.39 -0.02 0.79 16 51 H 0.13 1.85 8.14 -2.39 -0.02 1.84 16 52 H 0.11 1.66 6.55 -2.39 -0.02 1.65 16 53 H 0.10 1.51 7.10 -2.38 -0.02 1.50 16 Total: -1.00 -71.63 393.18 2.60 -69.02 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: 0.36 Total: 29.34 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 5.70 Total: 3.13 kcal Atomic # 7 Polarization: -107.14 SS G_CDS: -3.84 Total: -110.97 kcal Atomic # 8 Polarization: -36.68 SS G_CDS: -1.65 Total: -38.33 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -71.63 2.60 -69.02 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132454480.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.461 kcal (2) G-P(sol) polarization free energy of solvation -71.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds