Wall clock time and date at job start Tue Mar 31 2020 20:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30990 * 1 3 3 C 1.50706 * 120.00146 * 2 1 4 4 C 1.53008 * 109.46800 * 125.00287 * 3 2 1 5 5 C 1.50703 * 109.54086 * 299.99787 * 4 3 2 6 6 O 1.21270 * 120.00127 * 239.99939 * 5 4 3 7 7 N 1.34777 * 119.99483 * 60.00551 * 5 4 3 8 8 C 1.46500 * 119.99698 * 179.97438 * 7 5 4 9 9 H 1.09004 * 109.50066 * 34.93101 * 8 7 5 10 10 C 1.53042 * 109.50060 * 155.00316 * 8 7 5 11 11 C 1.53038 * 109.53929 * 181.34962 * 10 8 7 12 12 C 1.53188 * 109.31223 * 298.63155 * 11 10 8 13 13 H 1.09001 * 109.58920 * 294.84466 * 12 11 10 14 14 C 1.53006 * 109.58771 * 174.42416 * 12 11 10 15 15 N 1.46928 * 108.77832 * 54.63568 * 12 11 10 16 16 C 1.36933 * 120.63048 * 126.36506 * 15 12 11 17 17 H 1.07994 * 120.00570 * 331.08341 * 16 15 12 18 18 C 1.38815 * 119.99937 * 150.80872 * 16 15 12 19 19 N 1.31631 * 119.99574 * 345.54674 * 18 16 15 20 20 Si 1.86790 * 120.00356 * 165.54843 * 18 16 15 21 21 H 1.48497 * 109.47195 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47179 * 119.99673 * 20 18 16 23 23 H 1.48495 * 109.47277 * 239.99787 * 20 18 16 24 24 C 1.46925 * 118.73541 * 306.64765 * 15 12 11 25 25 C 1.53174 * 109.54215 * 60.17818 * 4 3 2 26 26 C 1.53286 * 109.06080 * 176.84997 * 25 4 3 27 27 O 1.42901 * 109.46102 * 302.44796 * 26 25 4 28 28 C 1.42909 * 114.09814 * 61.15762 * 27 26 25 29 29 C 1.53095 * 109.41204 * 298.83965 * 28 27 26 30 30 H 1.08003 * 120.00405 * 359.97438 * 1 2 3 31 31 H 1.07999 * 120.00519 * 179.97438 * 1 2 3 32 32 H 1.08006 * 119.99963 * 180.02562 * 2 1 3 33 33 H 1.08996 * 109.46810 * 5.00212 * 3 2 1 34 34 H 1.08994 * 109.47079 * 244.99837 * 3 2 1 35 35 H 0.96995 * 120.00419 * 359.97438 * 7 5 4 36 36 H 1.08994 * 109.46398 * 61.32340 * 10 8 7 37 37 H 1.09002 * 109.45473 * 301.36797 * 10 8 7 38 38 H 1.09002 * 109.49750 * 178.67704 * 11 10 8 39 39 H 1.09004 * 109.50106 * 58.58211 * 11 10 8 40 40 H 1.09002 * 109.47056 * 300.70507 * 14 12 11 41 41 H 1.08994 * 109.47055 * 60.71013 * 14 12 11 42 42 H 1.08998 * 109.47016 * 180.71387 * 14 12 11 43 43 H 0.96995 * 119.99476 * 180.02562 * 19 18 16 44 44 H 1.08998 * 109.58351 * 173.14445 * 24 15 12 45 45 H 1.09000 * 109.58296 * 293.56443 * 24 15 12 46 46 H 1.08996 * 109.52354 * 296.84023 * 25 4 3 47 47 H 1.08997 * 109.52484 * 57.03360 * 25 4 3 48 48 H 1.08993 * 109.45679 * 182.44905 * 26 25 4 49 49 H 1.09008 * 109.45853 * 62.44232 * 26 25 4 50 50 H 1.09000 * 109.47786 * 178.85954 * 28 27 26 51 51 H 1.08994 * 109.47910 * 58.82647 * 28 27 26 52 52 H 1.08996 * 109.52210 * 297.70326 * 29 28 27 53 53 H 1.09003 * 109.57115 * 177.54341 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 6 2.2655 1.1983 2.4703 6 8 2.3232 2.0756 3.3056 7 7 1.5132 0.1027 2.6945 8 6 0.7654 -0.0285 3.9474 9 1 0.4123 0.9526 4.2649 10 6 -0.4317 -0.9576 3.7331 11 6 -1.2325 -1.0687 5.0325 12 6 -0.3436 -1.6700 6.1256 13 1 -0.0825 -2.6948 5.8616 14 6 -1.0914 -1.6558 7.4603 15 7 0.8794 -0.8634 6.2376 16 6 1.2680 -0.3495 7.4459 17 1 0.5274 -0.1127 8.1954 18 6 2.6144 -0.1384 7.7097 19 7 3.5298 -0.6832 6.9364 20 14 3.1272 0.9187 9.1618 21 1 1.9169 1.4099 9.8683 22 1 3.9511 0.1102 10.0961 23 1 3.9212 2.0756 8.6760 24 6 1.6740 -0.6134 5.0273 25 6 4.0292 0.1746 1.0550 26 6 5.0449 0.2591 2.2000 27 8 5.7035 1.5266 2.1597 28 6 4.8277 2.6446 2.3199 29 6 3.8050 2.6571 1.1807 30 1 -0.5401 0.9353 0.0004 31 1 -0.5401 -0.9352 -0.0004 32 1 1.8499 -0.9354 -0.0004 33 1 1.3585 2.1316 0.0896 34 1 2.6212 1.4026 -0.9313 35 1 1.4668 -0.5988 2.0263 36 1 -0.0767 -1.9455 3.4396 37 1 -1.0692 -0.5528 2.9471 38 1 -2.0979 -1.7118 4.8726 39 1 -1.5669 -0.0778 5.3397 40 1 -1.3561 -0.6302 7.7176 41 1 -1.9981 -2.2547 7.3752 42 1 -0.4526 -2.0724 8.2391 43 1 4.4706 -0.5360 7.1209 44 1 2.4720 0.0936 5.2538 45 1 2.1030 -1.5503 4.6719 46 1 3.4934 -0.7729 1.1097 47 1 4.5506 0.2447 0.1003 48 1 5.7814 -0.5369 2.0914 49 1 4.5276 0.1484 3.1531 50 1 5.4081 3.5670 2.2976 51 1 4.3077 2.5650 3.2744 52 1 4.3218 2.7773 0.2286 53 1 3.1088 3.4835 1.3241 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132454482.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:08 Heat of formation + Delta-G solvation = -70.434809 kcal Electronic energy + Delta-G solvation = -32533.447097 eV Core-core repulsion = 28597.886607 eV Total energy + Delta-G solvation = -3935.560490 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.08785 -39.88774 -38.78166 -37.08963 -35.94731 -34.65433 -33.66356 -32.39508 -31.83622 -31.60905 -28.69006 -27.78690 -26.81240 -24.84511 -24.61470 -24.00413 -23.13678 -21.93871 -21.19394 -20.57094 -20.17165 -18.35364 -17.77211 -17.34577 -17.22004 -17.00363 -16.68655 -16.08471 -15.91438 -15.72923 -15.49418 -15.35261 -15.02607 -15.01813 -14.80130 -14.49081 -14.14597 -13.95918 -13.72436 -13.53746 -13.21696 -13.16880 -13.08230 -12.78917 -12.73041 -12.57395 -12.50340 -12.33944 -12.27805 -12.17312 -12.08489 -11.97349 -11.68685 -11.59356 -11.38592 -11.37078 -11.12874 -10.64907 -10.55893 -10.41749 -10.11540 -9.87806 -8.62247 -7.86063 -5.31989 1.36954 1.38423 1.41377 1.49090 1.74916 2.27953 2.48874 2.90490 3.30200 3.46894 3.57803 3.70193 3.76285 3.93460 3.98422 4.05277 4.08987 4.20921 4.27336 4.27494 4.33450 4.39487 4.53877 4.61750 4.63230 4.65043 4.70659 4.71094 4.79708 4.81112 4.88374 4.88780 4.99578 4.99607 5.02255 5.05868 5.06732 5.15161 5.17270 5.19334 5.30783 5.37048 5.53188 5.55501 5.61841 5.69111 5.76695 5.82849 5.90432 6.18694 6.40211 6.69854 7.15391 7.42068 7.89833 8.38400 9.18290 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.010834 B = 0.005166 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.794344 B = 5418.915313 C = 7321.392373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.181 4.181 3 C -0.071 4.071 4 C -0.069 4.069 5 C 0.512 3.488 6 O -0.585 6.585 7 N -0.702 5.702 8 C 0.131 3.869 9 H 0.045 0.955 10 C -0.105 4.105 11 C -0.118 4.118 12 C 0.153 3.847 13 H 0.022 0.978 14 C -0.129 4.129 15 N -0.603 5.603 16 C -0.247 4.247 17 H 0.074 0.926 18 C -0.053 4.053 19 N -0.930 5.930 20 Si 0.953 3.047 21 H -0.262 1.262 22 H -0.288 1.288 23 H -0.303 1.303 24 C 0.185 3.815 25 C -0.131 4.131 26 C 0.051 3.949 27 O -0.396 6.396 28 C 0.045 3.955 29 C -0.121 4.121 30 H 0.091 0.909 31 H 0.114 0.886 32 H 0.129 0.871 33 H 0.067 0.933 34 H 0.112 0.888 35 H 0.408 0.592 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.050 0.950 40 H 0.044 0.956 41 H 0.079 0.921 42 H 0.037 0.963 43 H 0.242 0.758 44 H 0.041 0.959 45 H -0.007 1.007 46 H 0.092 0.908 47 H 0.115 0.885 48 H 0.111 0.889 49 H 0.010 0.990 50 H 0.103 0.897 51 H 0.033 0.967 52 H 0.107 0.893 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.266 -0.754 -19.519 20.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.198 4.198 3 C -0.109 4.109 4 C -0.072 4.072 5 C 0.300 3.700 6 O -0.465 6.465 7 N -0.355 5.355 8 C 0.025 3.975 9 H 0.063 0.937 10 C -0.143 4.143 11 C -0.157 4.157 12 C 0.048 3.952 13 H 0.040 0.960 14 C -0.186 4.186 15 N -0.327 5.327 16 C -0.378 4.378 17 H 0.091 0.909 18 C -0.248 4.248 19 N -0.576 5.576 20 Si 0.782 3.218 21 H -0.187 1.187 22 H -0.215 1.215 23 H -0.231 1.231 24 C 0.058 3.942 25 C -0.169 4.169 26 C -0.026 4.026 27 O -0.315 6.315 28 C -0.032 4.032 29 C -0.159 4.159 30 H 0.110 0.890 31 H 0.132 0.868 32 H 0.146 0.854 33 H 0.086 0.914 34 H 0.130 0.870 35 H 0.248 0.752 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.114 0.886 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.098 0.902 42 H 0.056 0.944 43 H 0.051 0.949 44 H 0.059 0.941 45 H 0.011 0.989 46 H 0.110 0.890 47 H 0.133 0.867 48 H 0.129 0.871 49 H 0.029 0.971 50 H 0.121 0.879 51 H 0.051 0.949 52 H 0.125 0.875 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.910 -0.135 -18.900 19.803 hybrid contribution 0.628 0.361 1.321 1.507 sum -5.282 0.227 -17.579 18.357 Atomic orbital electron populations 1.24054 0.95923 1.02643 0.98697 1.23055 0.96444 0.98668 1.01681 1.20759 0.96997 0.96456 0.96645 1.20944 0.95722 0.98114 0.92428 1.21139 0.78822 0.81362 0.88713 1.90666 1.64440 1.42614 1.48736 1.46198 1.47981 1.21691 1.19655 1.21369 0.93050 0.98724 0.84383 0.93679 1.21621 0.95231 0.98937 0.98546 1.21949 0.98194 1.01204 0.94364 1.20810 0.86516 0.92581 0.95318 0.96033 1.21730 0.99237 1.01096 0.96580 1.44306 1.25894 1.58622 1.03853 1.19488 0.90424 1.34230 0.93664 0.90865 1.25763 0.96759 1.01656 1.00656 1.70160 0.99345 1.46485 1.41632 0.85408 0.78195 0.78346 0.79854 1.18658 1.21491 1.23100 1.20623 0.92721 0.95745 0.85136 1.22323 0.96147 0.97744 1.00640 1.22709 0.96806 0.86171 0.96880 1.87832 1.35186 1.14605 1.93877 1.22816 0.92612 0.89447 0.98302 1.21992 0.97693 0.96016 1.00165 0.89043 0.86774 0.85353 0.91440 0.87032 0.75247 0.91113 0.89689 0.88612 0.93133 0.93682 0.90244 0.94355 0.94877 0.94094 0.98926 0.88993 0.86715 0.87102 0.97147 0.87851 0.94882 0.87473 0.90780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.53 13.92 67.79 0.94 -1.59 16 2 C -0.18 -2.65 5.81 25.66 0.15 -2.50 16 3 C -0.07 -1.17 4.73 29.85 0.14 -1.03 16 4 C -0.07 -1.66 0.51 -52.81 -0.03 -1.68 16 5 C 0.51 17.76 5.08 87.66 0.45 18.20 16 6 O -0.58 -26.81 13.51 -3.00 -0.04 -26.85 16 7 N -0.70 -22.35 4.30 -442.84 -1.90 -24.25 16 8 C 0.13 5.12 2.59 44.93 0.12 5.23 16 9 H 0.04 2.08 7.58 -2.38 -0.02 2.06 16 10 C -0.11 -3.09 5.36 30.62 0.16 -2.93 16 11 C -0.12 -3.66 5.37 30.67 0.16 -3.49 16 12 C 0.15 6.10 3.50 44.97 0.16 6.25 16 13 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 14 C -0.13 -4.67 7.94 71.98 0.57 -4.10 16 15 N -0.60 -30.72 3.00 -676.05 -2.03 -32.75 16 16 C -0.25 -14.03 8.60 84.03 0.72 -13.31 16 17 H 0.07 4.02 6.20 -2.91 -0.02 4.00 16 18 C -0.05 -3.16 4.97 84.86 0.42 -2.74 16 19 N -0.93 -58.35 11.14 21.65 0.24 -58.11 16 20 Si 0.95 48.52 29.58 68.60 2.03 50.55 16 21 H -0.26 -12.54 7.11 99.48 0.71 -11.83 16 22 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 23 H -0.30 -16.02 7.11 99.48 0.71 -15.31 16 24 C 0.18 9.31 4.83 86.22 0.42 9.72 16 25 C -0.13 -2.83 4.54 30.75 0.14 -2.69 16 26 C 0.05 1.58 6.62 72.08 0.48 2.06 16 27 O -0.40 -13.31 10.77 -148.98 -1.60 -14.91 16 28 C 0.04 1.45 6.55 72.01 0.47 1.92 16 29 C -0.12 -3.01 4.56 30.68 0.14 -2.87 16 30 H 0.09 1.41 7.84 -2.91 -0.02 1.38 16 31 H 0.11 1.32 8.06 -2.91 -0.02 1.29 16 32 H 0.13 1.51 6.76 -2.91 -0.02 1.50 16 33 H 0.07 1.21 7.79 -2.39 -0.02 1.19 16 34 H 0.11 1.25 8.14 -2.39 -0.02 1.24 16 35 H 0.41 10.09 5.01 -92.71 -0.46 9.63 16 36 H 0.07 1.92 8.14 -2.39 -0.02 1.91 16 37 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.04 1.68 7.45 -2.39 -0.02 1.66 16 41 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.04 1.53 7.62 -2.39 -0.02 1.52 16 43 H 0.24 15.01 8.31 -92.71 -0.77 14.24 16 44 H 0.04 2.51 6.08 -2.39 -0.01 2.49 16 45 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 46 H 0.09 1.72 6.08 -2.39 -0.01 1.70 16 47 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 48 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 49 H 0.01 0.42 7.38 -2.38 -0.02 0.40 16 50 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 51 H 0.03 1.40 5.81 -2.39 -0.01 1.39 16 52 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 53 H 0.07 1.92 8.03 -2.39 -0.02 1.90 16 Total: -1.00 -77.88 392.77 2.73 -75.15 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 0.42 Total: 26.72 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: 5.62 Total: 4.46 kcal Atomic # 7 Polarization: -111.42 SS G_CDS: -3.69 Total: -115.11 kcal Atomic # 8 Polarization: -40.12 SS G_CDS: -1.64 Total: -41.76 kcal Atomic # 14 Polarization: 48.52 SS G_CDS: 2.03 Total: 50.55 kcal Total: -77.88 2.73 -75.15 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132454482.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.713 kcal (2) G-P(sol) polarization free energy of solvation -77.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds