Wall clock time and date at job start Tue Mar 31 2020 20:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 120.00066 * 2 1 4 4 C 1.53000 * 109.47109 * 124.99637 * 3 2 1 5 5 C 1.50696 * 109.54658 * 300.00558 * 4 3 2 6 6 O 1.21282 * 119.99558 * 239.82525 * 5 4 3 7 7 N 1.34774 * 120.00229 * 59.81510 * 5 4 3 8 8 C 1.46499 * 119.99648 * 180.02562 * 7 5 4 9 9 H 1.09001 * 109.53126 * 325.08424 * 8 7 5 10 10 C 1.53044 * 109.49773 * 205.00176 * 8 7 5 11 11 C 1.53037 * 109.53011 * 178.67707 * 10 8 7 12 12 C 1.53195 * 109.31199 * 61.37609 * 11 10 8 13 13 H 1.08997 * 109.58518 * 65.28968 * 12 11 10 14 14 C 1.52999 * 109.58607 * 185.57787 * 12 11 10 15 15 N 1.46933 * 108.77386 * 305.36461 * 12 11 10 16 16 C 1.36935 * 120.63053 * 233.63063 * 15 12 11 17 17 H 1.07997 * 119.99784 * 29.57251 * 16 15 12 18 18 C 1.38804 * 119.99942 * 209.57306 * 16 15 12 19 19 N 1.31625 * 120.00314 * 16.13523 * 18 16 15 20 20 Si 1.86804 * 120.00266 * 196.13187 * 18 16 15 21 21 H 1.48504 * 109.46870 * 94.02032 * 20 18 16 22 22 H 1.48496 * 109.47350 * 214.02500 * 20 18 16 23 23 H 1.48496 * 109.46696 * 334.02374 * 20 18 16 24 24 C 1.46927 * 118.73778 * 53.60873 * 15 12 11 25 25 C 1.53177 * 109.61376 * 60.22493 * 4 3 2 26 26 C 1.53099 * 109.16271 * 176.88874 * 25 4 3 27 27 O 1.42892 * 109.41450 * 302.39059 * 26 25 4 28 28 C 1.42908 * 114.09748 * 61.15696 * 27 26 25 29 29 C 1.53095 * 109.41551 * 298.83991 * 28 27 26 30 30 H 1.07999 * 119.99794 * 180.02562 * 1 2 3 31 31 H 1.07999 * 119.99810 * 0.02562 * 1 2 3 32 32 H 1.07999 * 119.99810 * 179.97438 * 2 1 3 33 33 H 1.08994 * 109.46928 * 4.99907 * 3 2 1 34 34 H 1.09001 * 109.46816 * 244.99894 * 3 2 1 35 35 H 0.96991 * 120.00195 * 0.02562 * 7 5 4 36 36 H 1.09003 * 109.45713 * 58.66092 * 10 8 7 37 37 H 1.09001 * 109.46308 * 298.69858 * 10 8 7 38 38 H 1.08998 * 109.49967 * 181.32173 * 11 10 8 39 39 H 1.08995 * 109.50011 * 301.42656 * 11 10 8 40 40 H 1.09001 * 109.47060 * 59.99896 * 14 12 11 41 41 H 1.09006 * 109.46717 * 179.97438 * 14 12 11 42 42 H 1.09000 * 109.47073 * 299.99534 * 14 12 11 43 43 H 0.96990 * 120.00372 * 179.97438 * 19 18 16 44 44 H 1.08998 * 109.58806 * 66.17311 * 24 15 12 45 45 H 1.08997 * 109.58401 * 186.46324 * 24 15 12 46 46 H 1.09001 * 109.52389 * 296.79064 * 25 4 3 47 47 H 1.09002 * 109.52762 * 56.98382 * 25 4 3 48 48 H 1.09004 * 109.47947 * 182.40541 * 26 25 4 49 49 H 1.09002 * 109.48506 * 62.38024 * 26 25 4 50 50 H 1.09002 * 109.47921 * 178.85473 * 28 27 26 51 51 H 1.08998 * 109.48975 * 58.83550 * 28 27 26 52 52 H 1.08997 * 109.51819 * 297.70285 * 29 28 27 53 53 H 1.08998 * 109.57164 * 177.54321 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 6 2.2655 1.1983 2.4703 6 8 2.3257 2.0744 3.3069 7 7 1.5103 0.1045 2.6930 8 6 0.7618 -0.0261 3.9456 9 1 1.3333 0.4195 4.7598 10 6 0.5186 -1.5075 4.2432 11 6 -0.2344 -1.6462 5.5682 12 6 -1.5926 -0.9467 5.4547 13 1 -2.2102 -1.4648 4.7211 14 6 -2.2920 -0.9605 6.8154 15 7 -1.3750 0.4419 5.0267 16 6 -1.8981 1.4836 5.7454 17 1 -2.0434 1.3852 6.8111 18 6 -2.2415 2.6658 5.1043 19 7 -2.3699 2.6910 3.7946 20 14 -2.5217 4.2212 6.1002 21 1 -1.2629 5.0071 6.1553 22 1 -3.5856 5.0347 5.4589 23 1 -2.9392 3.8580 7.4783 24 6 -0.5851 0.6917 3.8133 25 6 4.0308 0.1760 1.0562 26 6 5.0448 0.2593 2.2002 27 8 5.7034 1.5268 2.1598 28 6 4.8277 2.6447 2.3198 29 6 3.8050 2.6573 1.1806 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3586 2.1316 0.0895 34 1 2.6213 1.4026 -0.9314 35 1 1.4623 -0.5961 2.0240 36 1 1.4751 -2.0256 4.3131 37 1 -0.0742 -1.9466 3.4408 38 1 -0.3867 -2.7022 5.7914 39 1 0.3465 -1.1852 6.3669 40 1 -1.6751 -0.4376 7.5463 41 1 -3.2578 -0.4620 6.7325 42 1 -2.4412 -1.9913 7.1368 43 1 -2.6102 3.5170 3.3466 44 1 -1.1197 0.3086 2.9440 45 1 -0.4208 1.7630 3.6984 46 1 3.4963 -0.7723 1.1117 47 1 4.5522 0.2460 0.1015 48 1 5.7815 -0.5367 2.0917 49 1 4.5276 0.1486 3.1533 50 1 5.4080 3.5672 2.2976 51 1 4.3076 2.5655 3.2744 52 1 4.3219 2.7774 0.2285 53 1 3.1088 3.4836 1.3240 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132454484.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:12 Heat of formation + Delta-G solvation = -70.697690 kcal Electronic energy + Delta-G solvation = -32421.428121 eV Core-core repulsion = 28485.856232 eV Total energy + Delta-G solvation = -3935.571889 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.09008 -39.87812 -38.76204 -37.10746 -35.94503 -34.64957 -33.68543 -32.38992 -31.85132 -31.58391 -28.71096 -27.76972 -26.81944 -24.85896 -24.60332 -23.96672 -23.13264 -21.95635 -21.18181 -20.63027 -20.18393 -18.32972 -17.80550 -17.35099 -17.12793 -16.96837 -16.69334 -16.10453 -15.95384 -15.71155 -15.48974 -15.34682 -15.13241 -14.90666 -14.83331 -14.47343 -14.14074 -13.97425 -13.73182 -13.54695 -13.22927 -13.17127 -13.06485 -12.75747 -12.74070 -12.61846 -12.53915 -12.34284 -12.28552 -12.18759 -12.08052 -11.97380 -11.67373 -11.56404 -11.39193 -11.36426 -11.14139 -10.65138 -10.55606 -10.40892 -10.18282 -9.85032 -8.61809 -7.86336 -5.31780 1.32804 1.37379 1.42291 1.47871 1.74753 2.26801 2.48933 2.93522 3.29447 3.45965 3.57974 3.72493 3.76231 3.92769 3.99655 4.04696 4.08412 4.19835 4.24389 4.27085 4.33399 4.39529 4.51685 4.60509 4.62840 4.67910 4.70866 4.72719 4.79573 4.80316 4.87971 4.88631 4.99460 4.99477 5.03191 5.05504 5.06696 5.11954 5.17989 5.19834 5.30353 5.37929 5.53261 5.54653 5.61515 5.68786 5.69705 5.83207 5.88001 6.21782 6.40520 6.69252 7.15674 7.41362 7.90182 8.39088 9.18132 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011732 B = 0.004388 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.969583 B = 6379.722167 C = 7015.992261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.169 4.169 3 C -0.077 4.077 4 C -0.067 4.067 5 C 0.512 3.488 6 O -0.585 6.585 7 N -0.701 5.701 8 C 0.130 3.870 9 H 0.044 0.956 10 C -0.108 4.108 11 C -0.118 4.118 12 C 0.154 3.846 13 H 0.022 0.978 14 C -0.129 4.129 15 N -0.603 5.603 16 C -0.249 4.249 17 H 0.072 0.928 18 C -0.051 4.051 19 N -0.929 5.929 20 Si 0.952 3.048 21 H -0.300 1.300 22 H -0.293 1.293 23 H -0.262 1.262 24 C 0.189 3.811 25 C -0.133 4.133 26 C 0.051 3.949 27 O -0.393 6.393 28 C 0.051 3.949 29 C -0.127 4.127 30 H 0.112 0.888 31 H 0.069 0.931 32 H 0.147 0.853 33 H 0.046 0.954 34 H 0.115 0.885 35 H 0.408 0.592 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.050 0.950 40 H 0.044 0.956 41 H 0.037 0.963 42 H 0.079 0.921 43 H 0.243 0.757 44 H -0.001 1.001 45 H 0.036 0.964 46 H 0.099 0.901 47 H 0.111 0.889 48 H 0.124 0.876 49 H 0.024 0.976 50 H 0.102 0.898 51 H 0.042 0.958 52 H 0.104 0.896 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.149 -12.134 -9.214 20.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.187 4.187 3 C -0.114 4.114 4 C -0.071 4.071 5 C 0.299 3.701 6 O -0.465 6.465 7 N -0.355 5.355 8 C 0.023 3.977 9 H 0.062 0.938 10 C -0.146 4.146 11 C -0.157 4.157 12 C 0.048 3.952 13 H 0.040 0.960 14 C -0.186 4.186 15 N -0.327 5.327 16 C -0.380 4.380 17 H 0.090 0.910 18 C -0.246 4.246 19 N -0.575 5.575 20 Si 0.781 3.219 21 H -0.228 1.228 22 H -0.220 1.220 23 H -0.186 1.186 24 C 0.062 3.938 25 C -0.171 4.171 26 C -0.025 4.025 27 O -0.312 6.312 28 C -0.025 4.025 29 C -0.165 4.165 30 H 0.130 0.870 31 H 0.087 0.913 32 H 0.164 0.836 33 H 0.065 0.935 34 H 0.133 0.867 35 H 0.248 0.752 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.114 0.886 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.097 0.903 43 H 0.052 0.948 44 H 0.017 0.983 45 H 0.055 0.945 46 H 0.117 0.883 47 H 0.129 0.871 48 H 0.142 0.858 49 H 0.043 0.957 50 H 0.120 0.880 51 H 0.060 0.940 52 H 0.122 0.878 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.297 -11.401 -8.705 19.560 hybrid contribution -1.188 1.501 0.352 1.946 sum 12.110 -9.900 -8.353 17.732 Atomic orbital electron populations 1.23966 0.96649 1.01817 0.99334 1.23046 0.95532 0.98984 1.01119 1.20776 0.97072 0.96055 0.97522 1.20909 0.95672 0.98731 0.91755 1.21141 0.79003 0.81165 0.88750 1.90668 1.65577 1.41549 1.48749 1.46191 1.46884 1.22081 1.20336 1.21474 0.92812 0.97649 0.85716 0.93771 1.21647 1.01245 0.93010 0.98671 1.21947 0.96114 1.01082 0.96572 1.20795 0.94587 0.84761 0.95023 0.96023 1.21730 0.99622 1.01171 0.96124 1.44331 1.58425 1.01308 1.28667 1.19449 1.34286 0.92980 0.91249 0.91023 1.25740 1.00443 1.02016 0.96445 1.70161 1.52846 1.25906 1.08626 0.85473 0.76527 0.80730 0.79166 1.22768 1.21951 1.18577 1.20666 0.87993 0.97952 0.87219 1.22332 0.96068 0.97219 1.01462 1.22776 0.96719 0.86282 0.96769 1.87853 1.34830 1.14607 1.93905 1.22734 0.92137 0.89729 0.97926 1.22015 0.97855 0.95810 1.00839 0.86962 0.91275 0.83569 0.93521 0.86722 0.75178 0.89729 0.90906 0.88606 0.93166 0.93725 0.94397 0.90264 0.94802 0.98312 0.94519 0.88277 0.87055 0.85830 0.95731 0.87999 0.93973 0.87751 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.35 13.91 67.78 0.94 -3.41 16 2 C -0.17 -3.24 5.81 25.65 0.15 -3.09 16 3 C -0.08 -1.63 4.73 29.85 0.14 -1.49 16 4 C -0.07 -1.63 0.51 -52.81 -0.03 -1.66 16 5 C 0.51 17.71 5.08 87.66 0.45 18.16 16 6 O -0.59 -26.86 13.50 -3.04 -0.04 -26.90 16 7 N -0.70 -22.15 4.30 -442.16 -1.90 -24.04 16 8 C 0.13 5.04 2.60 45.07 0.12 5.16 16 9 H 0.04 2.04 7.58 -2.39 -0.02 2.02 16 10 C -0.11 -3.15 5.35 30.62 0.16 -2.99 16 11 C -0.12 -3.66 5.37 30.67 0.16 -3.49 16 12 C 0.15 6.11 3.50 44.97 0.16 6.26 16 13 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 14 C -0.13 -4.68 7.95 71.98 0.57 -4.11 16 15 N -0.60 -30.62 2.99 -675.22 -2.02 -32.64 16 16 C -0.25 -14.09 8.58 84.03 0.72 -13.36 16 17 H 0.07 3.93 6.22 -2.91 -0.02 3.91 16 18 C -0.05 -3.02 4.92 84.86 0.42 -2.60 16 19 N -0.93 -57.81 11.25 21.65 0.24 -57.56 16 20 Si 0.95 48.19 29.58 68.60 2.03 50.22 16 21 H -0.30 -15.64 7.11 99.48 0.71 -14.94 16 22 H -0.29 -14.73 7.11 99.48 0.71 -14.02 16 23 H -0.26 -12.35 7.11 99.48 0.71 -11.65 16 24 C 0.19 9.41 4.87 86.36 0.42 9.83 16 25 C -0.13 -2.23 4.52 30.69 0.14 -2.09 16 26 C 0.05 1.07 6.62 72.02 0.48 1.55 16 27 O -0.39 -10.25 10.77 -148.98 -1.60 -11.85 16 28 C 0.05 1.44 6.55 72.01 0.47 1.91 16 29 C -0.13 -3.23 4.56 30.68 0.14 -3.09 16 30 H 0.11 2.36 8.06 -2.91 -0.02 2.33 16 31 H 0.07 2.11 7.84 -2.91 -0.02 2.09 16 32 H 0.15 1.77 6.77 -2.91 -0.02 1.75 16 33 H 0.05 1.28 7.79 -2.39 -0.02 1.26 16 34 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.41 9.90 5.00 -92.71 -0.46 9.43 16 36 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.04 1.67 7.40 -2.39 -0.02 1.66 16 41 H 0.04 1.52 7.66 -2.38 -0.02 1.50 16 42 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.24 14.88 8.31 -92.72 -0.77 14.11 16 44 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 45 H 0.04 2.23 6.14 -2.39 -0.01 2.21 16 46 H 0.10 1.24 6.11 -2.39 -0.01 1.22 16 47 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 49 H 0.02 0.64 7.38 -2.39 -0.02 0.62 16 50 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 51 H 0.04 1.51 5.80 -2.39 -0.01 1.50 16 52 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 53 H 0.06 1.75 8.03 -2.39 -0.02 1.73 16 Total: -1.00 -77.23 392.95 2.74 -74.49 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: 0.42 Total: 26.78 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 5.61 Total: 1.50 kcal Atomic # 7 Polarization: -110.57 SS G_CDS: -3.67 Total: -114.25 kcal Atomic # 8 Polarization: -37.11 SS G_CDS: -1.64 Total: -38.75 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 2.03 Total: 50.22 kcal Total: -77.23 2.74 -74.49 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132454484.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.790 kcal (2) G-P(sol) polarization free energy of solvation -77.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds