Wall clock time and date at job start Tue Mar 31 2020 20:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 110.41625 * 2 1 4 4 C 1.54471 * 110.37345 * 237.69030 * 2 1 3 5 5 C 1.54683 * 104.08242 * 217.09715 * 4 2 1 6 6 C 1.54489 * 103.97648 * 0.13708 * 5 4 2 7 7 H 1.08998 * 110.36988 * 264.96145 * 6 5 4 8 8 C 1.52994 * 110.37206 * 142.73768 * 6 5 4 9 9 C 1.52998 * 109.47025 * 176.54752 * 8 6 5 10 10 C 1.50701 * 109.47341 * 179.97438 * 9 8 6 11 11 O 1.21285 * 119.99896 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00213 * 179.72480 * 10 9 8 13 13 C 1.46500 * 120.00064 * 180.27505 * 12 10 9 14 14 C 1.53002 * 109.47232 * 180.02562 * 13 12 10 15 15 C 1.50696 * 109.47031 * 180.02562 * 14 13 12 16 16 C 1.29446 * 117.69804 * 94.99952 * 15 14 13 17 17 C 1.50329 * 123.65685 * 180.85574 * 16 15 14 18 18 N 1.47008 * 109.15985 * 349.02368 * 17 16 15 19 19 C 1.36944 * 121.37121 * 222.96728 * 18 17 16 20 20 H 1.07996 * 119.99754 * 155.97600 * 19 18 17 21 21 C 1.38810 * 119.99784 * 335.97089 * 19 18 17 22 22 N 1.31616 * 120.00408 * 344.52472 * 21 19 18 23 23 Si 1.86803 * 119.99564 * 164.52385 * 21 19 18 24 24 H 1.48494 * 109.47179 * 59.99948 * 23 21 19 25 25 H 1.48501 * 109.46965 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47254 * 300.00008 * 23 21 19 27 27 C 1.47337 * 117.25158 * 42.94527 * 18 17 16 28 28 C 1.49975 * 117.69403 * 274.73584 * 15 14 13 29 29 O 1.44422 * 104.89890 * 23.85049 * 6 5 4 30 30 H 1.09004 * 109.46830 * 299.14564 * 1 2 3 31 31 H 1.08995 * 109.47049 * 59.14242 * 1 2 3 32 32 H 1.08998 * 109.47180 * 179.14534 * 1 2 3 33 33 H 1.09001 * 110.51140 * 335.83277 * 4 2 1 34 34 H 1.09004 * 110.51431 * 98.54664 * 4 2 1 35 35 H 1.08996 * 110.61481 * 241.49315 * 5 4 2 36 36 H 1.08996 * 110.49339 * 118.71739 * 5 4 2 37 37 H 1.09001 * 109.47600 * 56.54826 * 8 6 5 38 38 H 1.09000 * 109.47174 * 296.54697 * 8 6 5 39 39 H 1.08996 * 109.47240 * 60.00254 * 9 8 6 40 40 H 1.09000 * 109.47100 * 299.99990 * 9 8 6 41 41 H 0.96996 * 120.00418 * 0.27744 * 12 10 9 42 42 H 1.09000 * 109.47189 * 300.00182 * 13 12 10 43 43 H 1.08996 * 109.47486 * 59.99814 * 13 12 10 44 44 H 1.09000 * 109.46987 * 300.00066 * 14 13 12 45 45 H 1.08999 * 109.46994 * 60.00146 * 14 13 12 46 46 H 1.07996 * 118.17595 * 0.83360 * 16 15 14 47 47 H 1.09001 * 109.52395 * 108.92629 * 17 16 15 48 48 H 1.08993 * 109.52587 * 229.05616 * 17 16 15 49 49 H 0.97003 * 120.00015 * 180.02562 * 22 21 19 50 50 H 1.08996 * 109.77691 * 57.81248 * 27 18 17 51 51 H 1.09007 * 109.77897 * 178.55992 * 27 18 17 52 52 H 1.08998 * 109.31427 * 281.29621 * 28 15 14 53 53 H 1.09002 * 109.31323 * 40.71775 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0216 0.0000 4 6 2.0678 -0.7740 -1.2239 5 6 3.3207 -1.5047 -0.6863 6 6 3.3874 -1.0871 0.7996 7 1 4.0529 -0.2328 0.9241 8 6 3.8602 -2.2593 1.6616 9 6 4.0013 -1.7998 3.1142 10 6 4.4664 -2.9545 3.9635 11 8 4.6649 -4.0385 3.4569 12 7 4.6665 -2.7815 5.2850 13 6 5.1244 -3.9025 6.1095 14 6 5.2702 -3.4418 7.5612 15 6 5.7418 -4.5948 8.4091 16 6 7.0135 -4.7016 8.6259 17 6 7.6307 -5.8078 9.4353 18 7 6.5675 -6.5496 10.1284 19 6 6.7022 -6.9341 11.4358 20 1 5.8246 -7.1157 12.0384 21 6 7.9669 -7.0905 11.9864 22 7 9.0207 -7.1717 11.2021 23 14 8.1729 -7.1856 13.8406 24 1 7.4075 -8.3450 14.3648 25 1 9.6111 -7.3524 14.1708 26 1 7.6640 -5.9356 14.4600 27 6 5.3507 -6.8619 9.3584 28 6 4.7042 -5.5343 8.9475 29 8 2.0328 -0.7237 1.1443 30 1 -0.3633 0.5005 0.8976 31 1 -0.3633 0.5271 -0.8822 32 1 -0.3633 -1.0275 -0.0153 33 1 1.3276 -1.4919 -1.5771 34 1 2.3430 -0.0839 -2.0215 35 1 4.2142 -1.1749 -1.2161 36 1 3.1999 -2.5844 -0.7743 37 1 4.8247 -2.6127 1.2971 38 1 3.1320 -3.0684 1.6056 39 1 3.0368 -1.4465 3.4788 40 1 4.7295 -0.9907 3.1702 41 1 4.5073 -1.9148 5.6902 42 1 4.3973 -4.7129 6.0571 43 1 6.0879 -4.2547 5.7412 44 1 5.9971 -2.6313 7.6138 45 1 4.3064 -3.0900 7.9292 46 1 7.6677 -3.9544 8.2014 47 1 8.1745 -6.4829 8.7745 48 1 8.3173 -5.3838 10.1679 49 1 9.9044 -7.2814 11.5869 50 1 5.6133 -7.4388 8.4717 51 1 4.6585 -7.4325 9.9778 52 1 4.2216 -5.0808 9.8132 53 1 3.9550 -5.7230 8.1785 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161914987.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:49 Heat of formation + Delta-G solvation = -89.802036 kcal Electronic energy + Delta-G solvation = -28222.009702 eV Core-core repulsion = 24285.609387 eV Total energy + Delta-G solvation = -3936.400316 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.94315 -40.32687 -39.45632 -36.77129 -35.09171 -34.88484 -33.17384 -33.12656 -31.73129 -31.43715 -30.15533 -27.78079 -26.73023 -24.77969 -24.22312 -23.54073 -22.47063 -22.24793 -21.70247 -21.23501 -19.46328 -18.10016 -17.63689 -17.38224 -17.14297 -17.00334 -16.77255 -16.46006 -15.90198 -15.73543 -15.58203 -15.22988 -15.14475 -14.74389 -14.57045 -14.38951 -14.09283 -14.03922 -13.76567 -13.38432 -13.36166 -13.19854 -13.05674 -12.84088 -12.76506 -12.61566 -12.57569 -12.51010 -12.36506 -12.20469 -12.05114 -11.89447 -11.79743 -11.67969 -11.64233 -11.48984 -11.25753 -10.84184 -10.67909 -10.63907 -10.08699 -9.49156 -8.75553 -7.88138 -5.30576 1.41696 1.46624 1.49388 1.56266 1.67123 2.27080 2.51127 2.90655 3.28426 3.61273 3.67380 3.71862 3.85978 3.95972 3.97907 4.05067 4.10945 4.14136 4.16866 4.29625 4.34713 4.44978 4.51584 4.54474 4.57338 4.60235 4.67527 4.69945 4.74660 4.84034 4.85682 4.91040 4.96109 4.97880 4.98141 5.10266 5.11845 5.17241 5.18678 5.21291 5.22960 5.27403 5.32521 5.40821 5.47052 5.49715 5.60247 5.87470 6.03334 6.28093 6.33200 6.59546 7.12806 7.29872 7.82789 8.37972 9.20325 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.038901 B = 0.001481 C = 0.001464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.594976 B =18902.413669 C =19125.493444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.062 3.938 3 H 0.078 0.922 4 C -0.149 4.149 5 C -0.154 4.154 6 C 0.076 3.924 7 H 0.086 0.914 8 C -0.095 4.095 9 C -0.127 4.127 10 C 0.505 3.495 11 O -0.592 6.592 12 N -0.718 5.718 13 C 0.132 3.868 14 C -0.078 4.078 15 C -0.122 4.122 16 C -0.174 4.174 17 C 0.206 3.794 18 N -0.615 5.615 19 C -0.261 4.261 20 H 0.071 0.929 21 C -0.056 4.056 22 N -0.941 5.941 23 Si 0.972 3.028 24 H -0.275 1.275 25 H -0.294 1.294 26 H -0.277 1.277 27 C 0.135 3.865 28 C -0.087 4.087 29 O -0.391 6.391 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.054 0.946 39 H 0.110 0.890 40 H 0.121 0.879 41 H 0.418 0.582 42 H 0.054 0.946 43 H 0.047 0.953 44 H 0.084 0.916 45 H 0.092 0.908 46 H 0.114 0.886 47 H 0.002 0.998 48 H 0.056 0.944 49 H 0.250 0.750 50 H 0.017 0.983 51 H 0.059 0.941 52 H 0.069 0.931 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.132 20.770 -24.187 35.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.005 3.995 3 H 0.096 0.904 4 C -0.187 4.187 5 C -0.192 4.192 6 C 0.019 3.981 7 H 0.104 0.896 8 C -0.133 4.133 9 C -0.167 4.167 10 C 0.293 3.707 11 O -0.473 6.473 12 N -0.371 5.371 13 C 0.007 3.993 14 C -0.115 4.115 15 C -0.123 4.123 16 C -0.193 4.193 17 C 0.081 3.919 18 N -0.339 5.339 19 C -0.391 4.391 20 H 0.089 0.911 21 C -0.250 4.250 22 N -0.588 5.588 23 Si 0.800 3.200 24 H -0.201 1.201 25 H -0.220 1.220 26 H -0.203 1.203 27 C 0.010 3.990 28 C -0.126 4.126 29 O -0.311 6.311 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.073 0.927 39 H 0.128 0.872 40 H 0.139 0.861 41 H 0.255 0.745 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.103 0.897 45 H 0.110 0.890 46 H 0.131 0.869 47 H 0.019 0.981 48 H 0.074 0.926 49 H 0.059 0.941 50 H 0.035 0.965 51 H 0.077 0.923 52 H 0.088 0.912 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -14.959 19.919 -24.274 34.781 hybrid contribution 0.764 -0.370 1.086 1.379 sum -14.195 19.549 -23.187 33.486 Atomic orbital electron populations 1.21822 0.92860 1.02546 1.03123 1.23156 0.95762 0.95761 0.84863 0.90362 1.23043 0.97323 0.99923 0.98413 1.23042 0.99468 1.01371 0.95340 1.23066 0.84540 0.96789 0.93743 0.89575 1.21350 1.01834 0.96823 0.93291 1.21640 1.04677 0.96027 0.94328 1.21413 0.76171 0.90370 0.82740 1.90703 1.53371 1.29557 1.73654 1.45972 1.68156 1.14913 1.08020 1.21136 0.98970 0.89258 0.89894 1.20798 1.03298 0.95931 0.91489 1.20599 0.94356 0.98013 0.99311 1.22824 0.96789 0.99549 1.00176 1.19354 0.89893 0.89764 0.92853 1.44412 1.16361 1.63473 1.09625 1.19522 0.92311 1.40092 0.87155 0.91115 1.25802 0.95943 1.00937 1.02340 1.70194 0.98392 1.55231 1.34987 0.85263 0.76267 0.78288 0.80168 1.20073 1.21993 1.20342 1.21185 0.88569 0.95148 0.94137 1.20743 0.96464 0.95159 1.00184 1.89133 1.27688 1.74912 1.39354 0.92186 0.89454 0.92769 0.90854 0.88945 0.88993 0.91431 0.90310 0.92715 0.87230 0.86141 0.74502 0.92747 0.93454 0.89712 0.88950 0.86863 0.98068 0.92609 0.94131 0.96522 0.92255 0.91232 0.89809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.52 71.98 0.69 -0.69 16 2 C 0.06 0.67 3.92 31.10 0.12 0.79 16 3 H 0.08 0.66 8.14 -2.38 -0.02 0.65 16 4 C -0.15 -1.34 6.64 31.67 0.21 -1.13 16 5 C -0.15 -1.66 6.65 31.67 0.21 -1.45 16 6 C 0.08 0.96 3.26 31.10 0.10 1.07 16 7 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 8 C -0.09 -1.56 4.13 30.59 0.13 -1.43 16 9 C -0.13 -1.81 5.63 29.85 0.17 -1.65 16 10 C 0.50 11.33 7.83 87.66 0.69 12.01 16 11 O -0.59 -19.33 15.98 -3.04 -0.05 -19.38 16 12 N -0.72 -13.50 5.56 -463.06 -2.57 -16.07 16 13 C 0.13 3.22 5.66 86.38 0.49 3.71 16 14 C -0.08 -1.77 5.32 29.85 0.16 -1.62 16 15 C -0.12 -4.04 5.11 -15.13 -0.08 -4.12 16 16 C -0.17 -6.82 9.47 27.12 0.26 -6.56 16 17 C 0.21 10.55 5.23 85.42 0.45 10.99 16 18 N -0.61 -32.33 3.01 -703.03 -2.11 -34.44 16 19 C -0.26 -14.81 9.71 84.03 0.82 -13.99 16 20 H 0.07 3.86 7.88 -2.91 -0.02 3.84 16 21 C -0.06 -3.18 5.01 84.86 0.43 -2.76 16 22 N -0.94 -57.21 11.08 21.65 0.24 -56.97 16 23 Si 0.97 45.73 29.58 68.60 2.03 47.76 16 24 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 25 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 26 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 27 C 0.13 5.82 6.59 86.31 0.57 6.39 16 28 C -0.09 -2.96 5.95 29.72 0.18 -2.78 16 29 O -0.39 -6.22 10.75 -148.98 -1.60 -7.82 16 30 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.05 0.61 8.12 -2.39 -0.02 0.59 16 33 H 0.07 0.70 7.86 -2.39 -0.02 0.68 16 34 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 35 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.07 0.87 7.87 -2.39 -0.02 0.85 16 37 H 0.08 1.36 8.10 -2.39 -0.02 1.34 16 38 H 0.05 1.16 8.10 -2.39 -0.02 1.14 16 39 H 0.11 1.39 7.96 -2.39 -0.02 1.37 16 40 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.42 4.76 8.47 -92.71 -0.79 3.97 16 42 H 0.05 1.50 8.11 -2.39 -0.02 1.48 16 43 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.08 1.71 7.78 -2.39 -0.02 1.69 16 45 H 0.09 1.75 8.11 -2.39 -0.02 1.73 16 46 H 0.11 3.86 7.73 -2.91 -0.02 3.84 16 47 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 48 H 0.06 3.17 6.41 -2.39 -0.02 3.16 16 49 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 50 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 51 H 0.06 2.46 7.96 -2.38 -0.02 2.44 16 52 H 0.07 2.33 8.14 -2.39 -0.02 2.32 16 53 H 0.08 2.38 8.10 -2.39 -0.02 2.36 16 Total: -1.00 -74.99 419.32 1.58 -73.41 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.08 Total: 16.74 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 5.57 Total: -3.22 kcal Atomic # 7 Polarization: -103.03 SS G_CDS: -4.45 Total: -107.48 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -1.65 Total: -27.20 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -74.99 1.58 -73.41 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161914987.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.394 kcal (2) G-P(sol) polarization free energy of solvation -74.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds