Wall clock time and date at job start Tue Mar 31 2020 20:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 110.27683 * 2 1 4 4 C 1.54947 * 110.30822 * 122.19642 * 2 1 3 5 5 C 1.55316 * 100.94117 * 155.36233 * 4 2 1 6 6 C 1.54383 * 102.24850 * 325.86267 * 5 4 2 7 7 H 1.08999 * 109.83417 * 261.84508 * 6 5 4 8 8 C 1.53004 * 109.82727 * 140.87154 * 6 5 4 9 9 C 1.52998 * 109.46915 * 175.41480 * 8 6 5 10 10 C 1.50710 * 109.46731 * 180.02562 * 9 8 6 11 11 O 1.21272 * 119.99893 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99611 * 180.02562 * 10 9 8 13 13 C 1.46498 * 119.99723 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.47047 * 179.97438 * 13 12 10 15 15 C 1.50696 * 109.46887 * 180.02562 * 14 13 12 16 16 C 1.29456 * 117.69572 * 94.74167 * 15 14 13 17 17 C 1.50320 * 123.65406 * 180.58436 * 16 15 14 18 18 N 1.47000 * 109.20283 * 349.49708 * 17 16 15 19 19 C 1.36927 * 121.37807 * 222.71508 * 18 17 16 20 20 H 1.08004 * 120.00410 * 156.00367 * 19 18 17 21 21 C 1.38815 * 120.00379 * 336.00159 * 19 18 17 22 22 N 1.31626 * 119.99493 * 344.51333 * 21 19 18 23 23 Si 1.86800 * 120.00468 * 164.50638 * 21 19 18 24 24 H 1.48497 * 109.47060 * 90.00284 * 23 21 19 25 25 H 1.48498 * 109.47349 * 210.00250 * 23 21 19 26 26 H 1.48500 * 109.47110 * 330.00247 * 23 21 19 27 27 C 1.47347 * 117.24938 * 42.74560 * 18 17 16 28 28 C 1.49977 * 117.69355 * 274.99777 * 15 14 13 29 29 O 1.43239 * 107.58978 * 21.36053 * 6 5 4 30 30 H 1.08991 * 109.47098 * 180.64147 * 1 2 3 31 31 H 1.08993 * 109.47034 * 60.63546 * 1 2 3 32 32 H 1.09002 * 109.46601 * 300.63663 * 1 2 3 33 33 H 1.08998 * 111.12521 * 273.27361 * 4 2 1 34 34 H 1.08996 * 111.12818 * 37.44108 * 4 2 1 35 35 H 1.09001 * 110.84230 * 207.67660 * 5 4 2 36 36 H 1.08996 * 111.02335 * 84.13664 * 5 4 2 37 37 H 1.09005 * 109.47205 * 295.41367 * 8 6 5 38 38 H 1.08995 * 109.46898 * 55.41239 * 8 6 5 39 39 H 1.08997 * 109.47278 * 299.99786 * 9 8 6 40 40 H 1.08995 * 109.47534 * 60.00149 * 9 8 6 41 41 H 0.97001 * 120.00242 * 359.97438 * 12 10 9 42 42 H 1.08997 * 109.46882 * 299.99751 * 13 12 10 43 43 H 1.09001 * 109.47341 * 59.99920 * 13 12 10 44 44 H 1.08992 * 109.47155 * 300.00258 * 14 13 12 45 45 H 1.09001 * 109.46811 * 59.99968 * 14 13 12 46 46 H 1.07995 * 118.17052 * 0.85893 * 16 15 14 47 47 H 1.09000 * 109.67280 * 229.47971 * 17 16 15 48 48 H 1.08995 * 109.38589 * 109.34961 * 17 16 15 49 49 H 0.96995 * 119.99889 * 179.97438 * 22 21 19 50 50 H 1.08997 * 109.77979 * 178.61357 * 27 18 17 51 51 H 1.08997 * 109.82476 * 57.82725 * 27 18 17 52 52 H 1.08992 * 109.31436 * 281.29262 * 28 15 14 53 53 H 1.08996 * 109.31009 * 40.90932 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9078 1.0225 0.0000 4 6 2.0678 -0.7743 1.2297 5 6 3.4700 -1.2032 0.7178 6 6 3.2112 -1.4413 -0.7854 7 1 3.0624 -2.5050 -0.9712 8 6 4.3991 -0.9310 -1.6037 9 6 4.1862 -1.2732 -3.0796 10 6 5.3566 -0.7711 -3.8855 11 8 6.2706 -0.1959 -3.3337 12 7 5.3870 -0.9606 -5.2196 13 6 6.5244 -0.4720 -6.0031 14 6 6.3116 -0.8143 -7.4791 15 6 7.4819 -0.3123 -8.2849 16 6 8.4435 -1.1433 -8.5312 17 6 9.6777 -0.7822 -9.3096 18 7 9.4878 0.5355 -9.9330 19 6 9.8769 0.7765 -11.2235 20 1 9.4099 1.5691 -11.7893 21 6 10.8717 0.0021 -11.8046 22 7 11.6481 -0.7465 -11.0501 23 14 11.1085 0.0223 -13.6575 24 1 12.0731 1.0910 -14.0216 25 1 11.6349 -1.2926 -14.1036 26 1 9.8057 0.2846 -14.3201 27 6 8.8622 1.5866 -9.1115 28 6 7.4533 1.1165 -8.7398 29 8 2.0286 -0.7157 -1.1413 30 1 -0.3633 -1.0275 0.0115 31 1 -0.3633 0.5039 -0.8956 32 1 -0.3632 0.5237 0.8843 33 1 2.1497 -0.1223 2.0994 34 1 1.4471 -1.6429 1.4492 35 1 3.7966 -2.1217 1.2055 36 1 4.2001 -0.4073 0.8646 37 1 4.4815 0.1499 -1.4895 38 1 5.3146 -1.4046 -1.2493 39 1 4.1039 -2.3540 -3.1938 40 1 3.2707 -0.7997 -3.4341 41 1 4.6557 -1.4203 -5.6610 42 1 6.6069 0.6088 -5.8886 43 1 7.4399 -0.9459 -5.6489 44 1 6.2292 -1.8951 -7.5932 45 1 5.3960 -0.3407 -7.8335 46 1 8.3518 -2.1535 -8.1605 47 1 9.8550 -1.5290 -10.0835 48 1 10.5332 -0.7463 -8.6352 49 1 12.3429 -1.2878 -11.4561 50 1 8.8032 2.5139 -9.6812 51 1 9.4483 1.7464 -8.2065 52 1 6.8025 1.2049 -9.6097 53 1 7.0675 1.7431 -7.9358 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161914988.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:53 Heat of formation + Delta-G solvation = -90.249145 kcal Electronic energy + Delta-G solvation = -28265.025589 eV Core-core repulsion = 24328.605885 eV Total energy + Delta-G solvation = -3936.419704 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -40.97643 -40.35996 -39.46363 -36.77365 -35.09500 -34.84382 -33.18051 -33.15976 -31.74175 -31.44869 -30.15431 -27.76351 -26.73331 -24.80252 -24.25121 -23.55637 -22.46954 -22.44030 -21.58123 -21.02945 -19.46594 -18.13494 -17.94817 -17.57822 -17.07076 -16.88933 -16.78508 -16.53114 -15.77166 -15.64666 -15.32773 -15.21519 -15.17844 -14.76860 -14.52093 -14.48885 -14.22454 -13.93730 -13.75355 -13.38214 -13.27290 -13.23921 -13.15347 -12.84779 -12.79054 -12.65130 -12.59367 -12.57483 -12.36235 -12.18663 -12.01640 -11.89646 -11.79087 -11.68344 -11.68207 -11.59834 -11.26104 -10.84565 -10.68743 -10.41285 -10.09113 -9.49500 -8.75831 -7.88620 -5.30860 1.41264 1.46425 1.47599 1.57683 1.66908 2.27195 2.50789 2.85920 3.28216 3.60290 3.64705 3.70932 3.85195 3.91304 3.95607 4.08023 4.13163 4.15277 4.21529 4.28933 4.33048 4.41400 4.51649 4.54335 4.58027 4.62233 4.68199 4.75680 4.79251 4.84063 4.85568 4.90663 4.93158 4.96461 4.98648 5.07072 5.10115 5.15608 5.16919 5.22407 5.25659 5.33154 5.37439 5.40482 5.46820 5.49348 5.60176 5.87145 6.19134 6.27670 6.32906 6.59292 7.12473 7.29550 7.82403 8.37651 9.20081 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.038595 B = 0.001492 C = 0.001474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.314329 B =18764.996066 C =18993.598220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.064 3.936 3 H 0.062 0.938 4 C -0.146 4.146 5 C -0.154 4.154 6 C 0.081 3.919 7 H 0.094 0.906 8 C -0.110 4.110 9 C -0.126 4.126 10 C 0.504 3.496 11 O -0.593 6.593 12 N -0.718 5.718 13 C 0.132 3.868 14 C -0.078 4.078 15 C -0.122 4.122 16 C -0.174 4.174 17 C 0.207 3.793 18 N -0.614 5.614 19 C -0.260 4.260 20 H 0.071 0.929 21 C -0.056 4.056 22 N -0.942 5.942 23 Si 0.972 3.028 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.269 1.269 27 C 0.135 3.865 28 C -0.087 4.087 29 O -0.393 6.393 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.051 0.949 38 H 0.073 0.927 39 H 0.118 0.882 40 H 0.109 0.891 41 H 0.418 0.582 42 H 0.054 0.946 43 H 0.047 0.953 44 H 0.084 0.916 45 H 0.092 0.908 46 H 0.113 0.887 47 H 0.056 0.944 48 H 0.001 0.999 49 H 0.250 0.750 50 H 0.059 0.941 51 H 0.016 0.984 52 H 0.069 0.931 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.492 -3.713 23.963 35.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.007 3.993 3 H 0.080 0.920 4 C -0.183 4.183 5 C -0.191 4.191 6 C 0.024 3.976 7 H 0.112 0.888 8 C -0.148 4.148 9 C -0.166 4.166 10 C 0.293 3.707 11 O -0.473 6.473 12 N -0.371 5.371 13 C 0.007 3.993 14 C -0.115 4.115 15 C -0.123 4.123 16 C -0.193 4.193 17 C 0.081 3.919 18 N -0.339 5.339 19 C -0.390 4.390 20 H 0.089 0.911 21 C -0.251 4.251 22 N -0.588 5.588 23 Si 0.800 3.200 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.194 1.194 27 C 0.009 3.991 28 C -0.126 4.126 29 O -0.313 6.313 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.114 0.886 36 H 0.092 0.908 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.136 0.864 40 H 0.127 0.873 41 H 0.255 0.745 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.103 0.897 45 H 0.111 0.889 46 H 0.131 0.869 47 H 0.074 0.926 48 H 0.019 0.981 49 H 0.059 0.941 50 H 0.078 0.922 51 H 0.034 0.966 52 H 0.088 0.912 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -24.819 -3.388 24.070 34.740 hybrid contribution 0.936 -0.126 -1.126 1.469 sum -23.884 -3.513 22.945 33.305 Atomic orbital electron populations 1.21871 0.92858 1.02920 1.02829 1.23121 0.95564 0.95453 0.85184 0.91979 1.23308 0.95717 1.01157 0.98167 1.23194 0.98087 1.03459 0.94383 1.22820 0.84358 0.96428 0.94034 0.88821 1.21686 0.97991 1.01420 0.93714 1.21623 0.95924 1.04247 0.94763 1.21450 0.88379 0.78281 0.82616 1.90694 1.40612 1.44335 1.71691 1.45985 1.24106 1.59738 1.07269 1.21137 0.88754 0.98928 0.90433 1.20796 0.97122 1.02065 0.91530 1.20598 0.96160 0.95921 0.99573 1.22820 0.96699 0.99580 1.00242 1.19350 0.91376 0.87420 0.93707 1.44412 1.71070 1.07282 1.11087 1.19547 1.13859 1.16818 0.88734 0.91100 1.25808 0.95803 1.00978 1.02494 1.70204 1.20850 1.32676 1.35117 0.85203 0.77945 0.76654 0.80217 1.21123 1.21836 1.19428 1.21154 0.92724 0.91653 0.93535 1.20716 0.97708 0.93563 1.00573 1.88410 1.42442 1.65095 1.35385 0.91874 0.92581 0.89800 0.88852 0.89501 0.88569 0.90845 0.92966 0.90834 0.86351 0.87260 0.74515 0.92731 0.93499 0.89730 0.88935 0.86873 0.92573 0.98125 0.94137 0.92213 0.96594 0.91224 0.89770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.62 71.98 0.69 -0.65 16 2 C 0.06 0.76 4.08 31.26 0.13 0.89 16 3 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 4 C -0.15 -1.20 6.57 32.06 0.21 -0.99 16 5 C -0.15 -1.51 6.55 31.86 0.21 -1.30 16 6 C 0.08 1.02 3.52 31.07 0.11 1.13 16 7 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 8 C -0.11 -1.80 4.07 30.60 0.12 -1.68 16 9 C -0.13 -1.85 5.61 29.85 0.17 -1.68 16 10 C 0.50 11.47 7.83 87.66 0.69 12.16 16 11 O -0.59 -19.47 15.98 -3.00 -0.05 -19.52 16 12 N -0.72 -13.72 5.56 -463.05 -2.57 -16.29 16 13 C 0.13 3.25 5.66 86.38 0.49 3.74 16 14 C -0.08 -1.79 5.32 29.85 0.16 -1.63 16 15 C -0.12 -4.05 5.11 -15.14 -0.08 -4.12 16 16 C -0.17 -6.83 9.47 27.10 0.26 -6.58 16 17 C 0.21 10.56 5.23 85.42 0.45 11.01 16 18 N -0.61 -32.34 3.01 -703.40 -2.12 -34.46 16 19 C -0.26 -14.74 9.71 84.04 0.82 -13.93 16 20 H 0.07 3.88 7.88 -2.91 -0.02 3.85 16 21 C -0.06 -3.23 5.01 84.86 0.43 -2.80 16 22 N -0.94 -57.27 11.08 21.65 0.24 -57.03 16 23 Si 0.97 45.75 29.58 68.60 2.03 47.78 16 24 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 25 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 26 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 27 C 0.13 5.81 6.58 86.25 0.57 6.38 16 28 C -0.09 -2.96 5.95 29.66 0.18 -2.79 16 29 O -0.39 -6.18 10.32 -148.98 -1.54 -7.72 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.09 0.59 8.06 -2.39 -0.02 0.57 16 35 H 0.10 0.67 8.14 -2.39 -0.02 0.66 16 36 H 0.07 0.83 7.85 -2.39 -0.02 0.81 16 37 H 0.05 1.08 8.10 -2.38 -0.02 1.07 16 38 H 0.07 1.29 8.10 -2.39 -0.02 1.27 16 39 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.11 1.44 7.88 -2.39 -0.02 1.42 16 41 H 0.42 4.91 8.47 -92.71 -0.79 4.12 16 42 H 0.05 1.51 8.09 -2.39 -0.02 1.49 16 43 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.08 1.72 7.78 -2.39 -0.02 1.71 16 45 H 0.09 1.76 8.11 -2.39 -0.02 1.74 16 46 H 0.11 3.87 7.74 -2.91 -0.02 3.85 16 47 H 0.06 3.20 6.41 -2.39 -0.02 3.18 16 48 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 49 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 50 H 0.06 2.48 7.96 -2.39 -0.02 2.46 16 51 H 0.02 0.70 8.14 -2.39 -0.02 0.69 16 52 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 53 H 0.08 2.39 8.08 -2.39 -0.02 2.37 16 Total: -1.00 -74.85 419.22 1.66 -73.19 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 0.08 Total: 16.89 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: 5.58 Total: -2.85 kcal Atomic # 7 Polarization: -103.32 SS G_CDS: -4.45 Total: -107.77 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -1.59 Total: -27.23 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -74.85 1.66 -73.19 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161914988.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.059 kcal (2) G-P(sol) polarization free energy of solvation -74.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds