Wall clock time and date at job start Tue Mar 31 2020 20:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.33566 * 2 1 4 4 C 1.54478 * 110.36851 * 122.25450 * 2 1 3 5 5 C 1.54516 * 104.05957 * 142.80825 * 4 2 1 6 6 C 1.54470 * 104.06648 * 359.97438 * 5 4 2 7 7 H 1.08993 * 110.37401 * 94.95829 * 6 5 4 8 8 C 1.53001 * 110.37583 * 217.19245 * 6 5 4 9 9 C 1.52997 * 109.47338 * 185.00047 * 8 6 5 10 10 C 1.50698 * 109.47167 * 179.97438 * 9 8 6 11 11 O 1.21282 * 119.99818 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99934 * 179.97438 * 10 9 8 13 13 C 1.46505 * 119.99567 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.46811 * 179.97438 * 13 12 10 15 15 C 1.50698 * 109.47178 * 179.97438 * 14 13 12 16 16 C 1.29453 * 117.69084 * 95.00220 * 15 14 13 17 17 C 1.50332 * 123.64825 * 180.85930 * 16 15 14 18 18 N 1.47004 * 109.21892 * 348.99060 * 17 16 15 19 19 C 1.36935 * 121.37864 * 222.95959 * 18 17 16 20 20 H 1.07993 * 120.00446 * 155.96372 * 19 18 17 21 21 C 1.38814 * 119.99501 * 335.96604 * 19 18 17 22 22 N 1.31618 * 120.00190 * 344.50950 * 21 19 18 23 23 Si 1.86800 * 119.99878 * 164.51473 * 21 19 18 24 24 H 1.48500 * 109.47208 * 89.99580 * 23 21 19 25 25 H 1.48503 * 109.47067 * 209.99733 * 23 21 19 26 26 H 1.48500 * 109.46861 * 329.99738 * 23 21 19 27 27 C 1.47476 * 117.15403 * 42.94948 * 18 17 16 28 28 C 1.49965 * 117.69734 * 275.02384 * 15 14 13 29 29 O 1.44430 * 110.36948 * 237.63377 * 2 1 3 30 30 H 1.09003 * 109.47192 * 297.74986 * 1 2 3 31 31 H 1.09010 * 109.46800 * 57.74811 * 1 2 3 32 32 H 1.08996 * 109.47425 * 177.74380 * 1 2 3 33 33 H 1.09001 * 110.51298 * 24.16360 * 4 2 1 34 34 H 1.08996 * 110.51215 * 261.45160 * 4 2 1 35 35 H 1.09003 * 110.51134 * 241.34941 * 5 4 2 36 36 H 1.09005 * 110.62447 * 118.70543 * 5 4 2 37 37 H 1.09000 * 109.47099 * 64.99709 * 8 6 5 38 38 H 1.08998 * 109.46507 * 304.99793 * 8 6 5 39 39 H 1.09000 * 109.47301 * 59.99786 * 9 8 6 40 40 H 1.09002 * 109.46692 * 299.99574 * 9 8 6 41 41 H 0.96997 * 120.00344 * 0.02562 * 12 10 9 42 42 H 1.09000 * 109.47219 * 60.00207 * 13 12 10 43 43 H 1.08989 * 109.47202 * 299.99936 * 13 12 10 44 44 H 1.09000 * 109.47029 * 60.00128 * 14 13 12 45 45 H 1.09000 * 109.47645 * 300.00182 * 14 13 12 46 46 H 1.07995 * 118.17769 * 0.88265 * 16 15 14 47 47 H 1.08997 * 109.52035 * 108.92971 * 17 16 15 48 48 H 1.08996 * 109.51770 * 229.05338 * 17 16 15 49 49 H 0.97001 * 119.99771 * 179.97438 * 22 21 19 50 50 H 1.09001 * 109.75617 * 178.61930 * 27 18 17 51 51 H 1.09005 * 109.82512 * 57.85512 * 27 18 17 52 52 H 1.09001 * 109.31185 * 281.29090 * 28 15 14 53 53 H 1.09001 * 109.31317 * 40.71288 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0220 0.0000 4 6 2.0677 -0.7729 1.2247 5 6 3.3177 -1.5051 0.6873 6 6 3.3870 -1.0886 -0.7986 7 1 4.0534 -0.2351 -0.9227 8 6 3.8597 -2.2619 -1.6592 9 6 4.0404 -1.7939 -3.1046 10 6 4.5065 -2.9495 -3.9522 11 8 4.6770 -4.0401 -3.4497 12 7 4.7331 -2.7712 -5.2688 13 6 5.1857 -3.8948 -6.0928 14 6 5.3654 -3.4271 -7.5385 15 6 5.8316 -4.5826 -8.3861 16 6 4.9335 -5.2585 -9.0283 17 6 5.2465 -6.4456 -9.8958 18 7 6.7005 -6.5290 -10.0955 19 6 7.2365 -6.8103 -11.3238 20 1 8.2438 -6.4989 -11.5576 21 6 6.4850 -7.4958 -12.2684 22 7 5.3956 -8.1377 -11.9031 23 14 7.0201 -7.5074 -14.0581 24 1 7.9200 -8.6640 -14.2983 25 1 5.8243 -7.6208 -14.9315 26 1 7.7412 -6.2466 -14.3673 27 6 7.5562 -6.2966 -8.9171 28 6 7.3031 -4.8688 -8.4257 29 8 2.0327 -0.7248 -1.1436 30 1 -0.3634 0.4785 0.9095 31 1 -0.3633 0.5485 -0.8692 32 1 -0.3634 -1.0268 -0.0405 33 1 1.3274 -1.4904 1.5787 34 1 2.3429 -0.0820 2.0216 35 1 3.1954 -2.5847 0.7757 36 1 4.2119 -1.1783 1.2181 37 1 3.1174 -3.0594 -1.6256 38 1 4.8100 -2.6337 -1.2762 39 1 4.7827 -0.9964 -3.1383 40 1 3.0900 -1.4221 -3.4876 41 1 4.5964 -1.8991 -5.6707 42 1 4.4436 -4.6924 -6.0589 43 1 6.1361 -4.2664 -5.7100 44 1 6.1073 -2.6293 -7.5727 45 1 4.4147 -3.0557 -7.9211 46 1 3.9020 -4.9522 -8.9360 47 1 4.8928 -7.3550 -9.4101 48 1 4.7522 -6.3320 -10.8606 49 1 4.8703 -8.6164 -12.5633 50 1 8.6041 -6.4110 -9.1944 51 1 7.3032 -7.0076 -8.1305 52 1 7.7894 -4.1640 -9.1001 53 1 7.7201 -4.7526 -7.4253 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161914989.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:58 Heat of formation + Delta-G solvation = -89.982593 kcal Electronic energy + Delta-G solvation = -28220.536384 eV Core-core repulsion = 24284.128239 eV Total energy + Delta-G solvation = -3936.408145 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -40.94430 -40.33232 -39.45525 -36.76999 -35.09351 -34.88714 -33.17373 -33.13466 -31.73458 -31.44532 -30.15985 -27.78396 -26.73164 -24.77836 -24.22025 -23.54038 -22.47363 -22.25277 -21.69977 -21.23798 -19.46353 -18.10399 -17.61980 -17.40971 -17.11812 -17.00924 -16.77434 -16.46318 -15.90587 -15.73238 -15.58786 -15.25765 -15.11511 -14.75155 -14.56917 -14.38345 -14.16943 -13.96844 -13.78348 -13.39047 -13.34461 -13.20287 -13.06449 -12.84104 -12.78451 -12.62047 -12.57678 -12.51377 -12.35571 -12.18563 -12.05950 -11.89320 -11.79514 -11.67739 -11.64383 -11.48233 -11.25862 -10.84211 -10.68651 -10.64093 -10.08683 -9.49272 -8.75791 -7.88476 -5.30741 1.41355 1.46417 1.47664 1.57712 1.67128 2.27147 2.50830 2.90562 3.28415 3.61244 3.67050 3.72050 3.86113 3.95686 3.98054 4.04986 4.10687 4.14169 4.17395 4.29182 4.34931 4.44779 4.51404 4.54181 4.57697 4.60616 4.67893 4.69605 4.74558 4.83886 4.86132 4.91120 4.95591 4.97840 4.98339 5.10340 5.11898 5.17034 5.18389 5.21145 5.22962 5.27355 5.32533 5.40738 5.47083 5.49524 5.60278 5.87579 6.03778 6.27784 6.32900 6.59609 7.12416 7.29945 7.82362 8.37942 9.20253 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.034495 B = 0.001493 C = 0.001470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.515532 B =18745.345572 C =19037.687615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.062 3.938 3 H 0.079 0.921 4 C -0.149 4.149 5 C -0.154 4.154 6 C 0.076 3.924 7 H 0.088 0.912 8 C -0.095 4.095 9 C -0.127 4.127 10 C 0.505 3.495 11 O -0.592 6.592 12 N -0.718 5.718 13 C 0.132 3.868 14 C -0.078 4.078 15 C -0.121 4.121 16 C -0.175 4.175 17 C 0.206 3.794 18 N -0.615 5.615 19 C -0.259 4.259 20 H 0.072 0.928 21 C -0.057 4.057 22 N -0.942 5.942 23 Si 0.972 3.028 24 H -0.284 1.284 25 H -0.293 1.293 26 H -0.269 1.269 27 C 0.134 3.866 28 C -0.087 4.087 29 O -0.392 6.392 30 H 0.087 0.913 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.052 0.948 38 H 0.080 0.920 39 H 0.123 0.877 40 H 0.108 0.892 41 H 0.418 0.582 42 H 0.044 0.956 43 H 0.058 0.942 44 H 0.094 0.906 45 H 0.082 0.918 46 H 0.112 0.888 47 H 0.001 0.999 48 H 0.055 0.945 49 H 0.249 0.751 50 H 0.060 0.940 51 H 0.016 0.984 52 H 0.070 0.930 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.634 23.352 26.051 35.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.005 3.995 3 H 0.097 0.903 4 C -0.187 4.187 5 C -0.192 4.192 6 C 0.019 3.981 7 H 0.106 0.894 8 C -0.133 4.133 9 C -0.167 4.167 10 C 0.293 3.707 11 O -0.473 6.473 12 N -0.371 5.371 13 C 0.007 3.993 14 C -0.115 4.115 15 C -0.122 4.122 16 C -0.195 4.195 17 C 0.081 3.919 18 N -0.339 5.339 19 C -0.389 4.389 20 H 0.090 0.910 21 C -0.251 4.251 22 N -0.589 5.589 23 Si 0.800 3.200 24 H -0.211 1.211 25 H -0.219 1.219 26 H -0.194 1.194 27 C 0.009 3.991 28 C -0.125 4.125 29 O -0.312 6.312 30 H 0.106 0.894 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.111 0.889 35 H 0.085 0.915 36 H 0.111 0.889 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.141 0.859 40 H 0.126 0.874 41 H 0.255 0.745 42 H 0.062 0.938 43 H 0.076 0.924 44 H 0.113 0.887 45 H 0.101 0.899 46 H 0.130 0.870 47 H 0.019 0.981 48 H 0.073 0.927 49 H 0.058 0.942 50 H 0.078 0.922 51 H 0.034 0.966 52 H 0.088 0.912 53 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.711 22.446 26.088 34.886 hybrid contribution -0.056 -0.615 -1.248 1.392 sum -5.767 21.832 24.841 33.570 Atomic orbital electron populations 1.21828 0.92965 1.02460 1.03154 1.23153 0.95707 0.95792 0.84883 0.90279 1.23010 0.97359 0.99926 0.98407 1.23010 0.99507 1.01337 0.95364 1.23075 0.84528 0.96817 0.93717 0.89411 1.21353 1.01805 0.96762 0.93394 1.21649 1.04595 0.96047 0.94403 1.21413 0.76108 0.90476 0.82699 1.90702 1.53838 1.29126 1.73619 1.45974 1.68316 1.14327 1.08447 1.21137 0.99143 0.88937 0.90043 1.20799 1.02764 0.96313 0.91647 1.20605 0.95277 0.97732 0.98571 1.22821 0.99238 0.98175 0.99237 1.19344 0.84348 0.91747 0.96431 1.44442 1.01618 1.82450 1.05364 1.19548 0.99981 1.28934 0.90428 0.91040 1.25811 0.98820 0.97452 1.03052 1.70205 1.19299 1.35733 1.33655 0.85203 0.76873 0.78084 0.79855 1.21106 1.21897 1.19376 1.21181 0.94658 0.94707 0.88552 1.20710 0.93172 0.97464 1.01155 1.89136 1.27792 1.74846 1.39441 0.89425 0.92195 0.92883 0.90943 0.88855 0.91510 0.88882 0.92910 0.90134 0.85898 0.87422 0.74495 0.93786 0.92410 0.88722 0.89923 0.87033 0.98141 0.92665 0.94154 0.92160 0.96577 0.91182 0.89603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.52 71.98 0.68 -0.77 16 2 C 0.06 0.69 3.92 31.10 0.12 0.81 16 3 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 4 C -0.15 -1.36 6.63 31.61 0.21 -1.15 16 5 C -0.15 -1.65 6.63 31.61 0.21 -1.44 16 6 C 0.08 0.96 3.25 31.09 0.10 1.06 16 7 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 8 C -0.10 -1.56 4.13 30.59 0.13 -1.43 16 9 C -0.13 -1.80 5.64 29.85 0.17 -1.64 16 10 C 0.50 11.29 7.83 87.66 0.69 11.98 16 11 O -0.59 -19.32 15.98 -3.03 -0.05 -19.36 16 12 N -0.72 -13.45 5.56 -463.06 -2.57 -16.02 16 13 C 0.13 3.21 5.66 86.38 0.49 3.70 16 14 C -0.08 -1.77 5.32 29.85 0.16 -1.61 16 15 C -0.12 -4.01 5.11 -15.14 -0.08 -4.09 16 16 C -0.18 -6.92 9.47 27.11 0.26 -6.67 16 17 C 0.21 10.60 5.22 85.42 0.45 11.04 16 18 N -0.61 -32.33 3.01 -703.03 -2.12 -34.44 16 19 C -0.26 -14.69 9.72 84.03 0.82 -13.88 16 20 H 0.07 3.90 7.88 -2.91 -0.02 3.87 16 21 C -0.06 -3.26 5.01 84.86 0.43 -2.84 16 22 N -0.94 -57.46 11.08 21.65 0.24 -57.22 16 23 Si 0.97 45.78 29.58 68.60 2.03 47.81 16 24 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 25 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 27 C 0.13 5.76 6.58 86.23 0.57 6.33 16 28 C -0.09 -2.91 5.95 29.65 0.18 -2.73 16 29 O -0.39 -6.38 10.82 -148.98 -1.61 -7.99 16 30 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.07 0.71 7.87 -2.39 -0.02 0.69 16 34 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.07 0.87 7.87 -2.39 -0.02 0.85 16 36 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 37 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 38 H 0.08 1.35 8.10 -2.39 -0.02 1.33 16 39 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.11 1.40 8.01 -2.39 -0.02 1.38 16 41 H 0.42 4.72 8.47 -92.71 -0.79 3.94 16 42 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.06 1.56 8.08 -2.39 -0.02 1.54 16 44 H 0.09 1.74 8.11 -2.39 -0.02 1.72 16 45 H 0.08 1.70 7.78 -2.39 -0.02 1.68 16 46 H 0.11 3.87 7.73 -2.91 -0.02 3.85 16 47 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 48 H 0.06 3.16 6.41 -2.39 -0.02 3.14 16 49 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 50 H 0.06 2.48 7.97 -2.39 -0.02 2.46 16 51 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 52 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 53 H 0.09 2.37 8.08 -2.39 -0.02 2.35 16 Total: -1.00 -75.54 419.41 1.56 -73.98 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.08 Total: 16.56 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: 5.57 Total: -3.31 kcal Atomic # 7 Polarization: -103.23 SS G_CDS: -4.45 Total: -107.69 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -1.66 Total: -27.36 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -75.54 1.56 -73.98 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161914989.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.000 kcal (2) G-P(sol) polarization free energy of solvation -75.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds