Wall clock time and date at job start Tue Mar 31 2020 20:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.82653 * 2 1 4 4 C 1.54379 * 109.83414 * 239.10877 * 2 1 3 5 5 C 1.55297 * 102.25702 * 219.04287 * 4 2 1 6 6 C 1.54950 * 100.94379 * 34.12979 * 5 4 2 7 7 H 1.08994 * 110.30638 * 82.57135 * 6 5 4 8 8 C 1.52995 * 110.31160 * 204.64376 * 6 5 4 9 9 C 1.53002 * 109.47111 * 184.99975 * 8 6 5 10 10 C 1.50709 * 109.46979 * 179.97438 * 9 8 6 11 11 O 1.21274 * 119.99883 * 0.02562 * 10 9 8 12 12 N 1.34772 * 119.99677 * 180.02562 * 10 9 8 13 13 C 1.46497 * 119.99795 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47097 * 179.97438 * 13 12 10 15 15 C 1.50704 * 109.47275 * 179.97438 * 14 13 12 16 16 C 1.29453 * 117.69147 * 94.99920 * 15 14 13 17 17 C 1.50329 * 123.65058 * 180.86061 * 16 15 14 18 18 N 1.47006 * 109.21504 * 348.99249 * 17 16 15 19 19 C 1.36940 * 121.37545 * 222.95805 * 18 17 16 20 20 H 1.07998 * 120.00242 * 155.96345 * 19 18 17 21 21 C 1.38814 * 119.99622 * 335.96469 * 19 18 17 22 22 N 1.31618 * 120.00190 * 344.51575 * 21 19 18 23 23 Si 1.86800 * 119.99878 * 164.52099 * 21 19 18 24 24 H 1.48494 * 109.47155 * 59.99627 * 23 21 19 25 25 H 1.48502 * 109.47034 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47233 * 299.99696 * 23 21 19 27 27 C 1.47461 * 117.17681 * 42.92016 * 18 17 16 28 28 C 1.49963 * 117.69613 * 274.97973 * 15 14 13 29 29 O 1.43243 * 109.90529 * 120.93055 * 2 1 3 30 30 H 1.08994 * 109.46992 * 180.88973 * 1 2 3 31 31 H 1.09008 * 109.47350 * 300.89242 * 1 2 3 32 32 H 1.08994 * 109.46929 * 60.88841 * 1 2 3 33 33 H 1.09002 * 110.84511 * 100.84877 * 4 2 1 34 34 H 1.09003 * 111.01994 * 337.30990 * 4 2 1 35 35 H 1.09010 * 111.12473 * 276.21788 * 5 4 2 36 36 H 1.08992 * 111.16607 * 152.06725 * 5 4 2 37 37 H 1.08998 * 109.47344 * 65.00020 * 8 6 5 38 38 H 1.08996 * 109.47373 * 305.00403 * 8 6 5 39 39 H 1.09000 * 109.47269 * 60.00267 * 9 8 6 40 40 H 1.09002 * 109.47242 * 299.99738 * 9 8 6 41 41 H 0.96999 * 120.00405 * 359.97438 * 12 10 9 42 42 H 1.08998 * 109.47353 * 60.00009 * 13 12 10 43 43 H 1.08999 * 109.47512 * 299.99619 * 13 12 10 44 44 H 1.09000 * 109.47269 * 60.00265 * 14 13 12 45 45 H 1.09002 * 109.47242 * 299.99736 * 14 13 12 46 46 H 1.07999 * 118.17602 * 0.83561 * 16 15 14 47 47 H 1.08995 * 109.52139 * 108.92970 * 17 16 15 48 48 H 1.08994 * 109.51893 * 229.05258 * 17 16 15 49 49 H 0.97001 * 119.99771 * 179.97438 * 22 21 19 50 50 H 1.09003 * 109.75040 * 178.65216 * 27 18 17 51 51 H 1.09002 * 109.82795 * 57.88622 * 27 18 17 52 52 H 1.08997 * 109.31977 * 281.28933 * 28 15 14 53 53 H 1.09005 * 109.31461 * 40.90829 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8997 1.0254 0.0000 4 6 2.0538 -0.7456 -1.2462 5 6 3.2744 -1.5198 -0.6784 6 6 2.7776 -1.8430 0.7533 7 1 2.1456 -2.7309 0.7429 8 6 3.9664 -2.0495 1.6940 9 6 3.4586 -2.4888 3.0688 10 6 4.6297 -2.6928 3.9952 11 8 5.7591 -2.5047 3.5954 12 7 4.4218 -3.0841 5.2680 13 6 5.5601 -3.2818 6.1687 14 6 5.0523 -3.7213 7.5435 15 6 6.2233 -3.9253 8.4699 16 6 6.5616 -2.9397 9.2379 17 6 7.7174 -2.9903 10.1979 18 7 8.1977 -4.3756 10.3042 19 6 8.5242 -4.9262 11.5148 20 1 8.4969 -5.9979 11.6456 21 6 8.8902 -4.1067 12.5738 22 7 9.2196 -2.8520 12.3516 23 14 8.9152 -4.7849 14.3141 24 1 9.8719 -5.9181 14.3901 25 1 9.3379 -3.7170 15.2555 26 1 7.5564 -5.2589 14.6803 27 6 8.3121 -5.1467 9.0524 28 6 6.9143 -5.2559 8.4374 29 8 2.0177 -0.6923 1.1553 30 1 -0.3633 -1.0275 0.0160 31 1 -0.3634 0.5277 0.8819 32 1 -0.3633 0.4999 -0.8978 33 1 2.3658 -0.0410 -2.0171 34 1 1.3034 -1.4348 -1.6336 35 1 4.1627 -0.8885 -0.6527 36 1 3.4601 -2.4321 -1.2451 37 1 4.5186 -1.1148 1.7923 38 1 4.6231 -2.8181 1.2865 39 1 2.9065 -3.4235 2.9705 40 1 2.8021 -1.7201 3.4763 41 1 3.5185 -3.2342 5.5879 42 1 6.1120 -2.3471 6.2674 43 1 6.2170 -4.0502 5.7610 44 1 4.5002 -4.6560 7.4451 45 1 4.3958 -2.9526 7.9511 46 1 5.9815 -2.0302 9.1859 47 1 8.5224 -2.3527 9.8328 48 1 7.3923 -2.6413 11.1780 49 1 9.4750 -2.2793 13.0918 50 1 8.6993 -6.1427 9.2674 51 1 8.9801 -4.6326 8.3612 52 1 6.3277 -5.9807 9.0019 53 1 7.0033 -5.5907 7.4039 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161914990.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:02 Heat of formation + Delta-G solvation = -90.208558 kcal Electronic energy + Delta-G solvation = -28230.597936 eV Core-core repulsion = 24294.179992 eV Total energy + Delta-G solvation = -3936.417944 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.95460 -40.36932 -39.45556 -36.76840 -35.09130 -34.88449 -33.17871 -33.15976 -31.70007 -31.43298 -30.14791 -27.78023 -26.74301 -24.79646 -24.24248 -23.54147 -22.46251 -22.42244 -21.57980 -21.06247 -19.46100 -18.13189 -17.94460 -17.57246 -17.07153 -16.81071 -16.79554 -16.56159 -15.76879 -15.66037 -15.28561 -15.25611 -15.12957 -14.73216 -14.54709 -14.42741 -14.18901 -14.10577 -13.80281 -13.38764 -13.33878 -13.19175 -13.04429 -12.84225 -12.76577 -12.64177 -12.60898 -12.57320 -12.35641 -12.20582 -12.02227 -11.89281 -11.78203 -11.68300 -11.67719 -11.58619 -11.25668 -10.83355 -10.67958 -10.41788 -10.08444 -9.49267 -8.75764 -7.88138 -5.30611 1.41455 1.46531 1.49417 1.56256 1.67540 2.27658 2.51074 2.84841 3.28443 3.58587 3.65648 3.72831 3.84645 3.91366 3.96002 4.08734 4.13738 4.15776 4.19814 4.29059 4.36090 4.42762 4.51197 4.54715 4.57567 4.59877 4.69050 4.75134 4.79933 4.81194 4.86211 4.91098 4.93363 4.97307 4.99798 5.07951 5.10449 5.14097 5.17291 5.23059 5.26512 5.33029 5.38214 5.40829 5.47413 5.49558 5.60176 5.87608 6.20312 6.27795 6.33010 6.59882 7.12567 7.30203 7.82554 8.38081 9.20360 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.036050 B = 0.001486 C = 0.001469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.516350 B =18832.585703 C =19059.847000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.065 3.935 3 H 0.073 0.927 4 C -0.146 4.146 5 C -0.154 4.154 6 C 0.081 3.919 7 H 0.086 0.914 8 C -0.099 4.099 9 C -0.127 4.127 10 C 0.505 3.495 11 O -0.592 6.592 12 N -0.718 5.718 13 C 0.132 3.868 14 C -0.078 4.078 15 C -0.121 4.121 16 C -0.176 4.176 17 C 0.206 3.794 18 N -0.615 5.615 19 C -0.260 4.260 20 H 0.072 0.928 21 C -0.056 4.056 22 N -0.942 5.942 23 Si 0.973 3.027 24 H -0.274 1.274 25 H -0.294 1.294 26 H -0.277 1.277 27 C 0.134 3.866 28 C -0.087 4.087 29 O -0.396 6.396 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.052 0.948 38 H 0.079 0.921 39 H 0.122 0.878 40 H 0.107 0.893 41 H 0.418 0.582 42 H 0.044 0.956 43 H 0.057 0.943 44 H 0.094 0.906 45 H 0.082 0.918 46 H 0.112 0.888 47 H 0.001 0.999 48 H 0.055 0.945 49 H 0.249 0.751 50 H 0.060 0.940 51 H 0.016 0.984 52 H 0.070 0.930 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.605 1.197 -28.062 35.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.008 3.992 3 H 0.091 0.909 4 C -0.183 4.183 5 C -0.192 4.192 6 C 0.024 3.976 7 H 0.104 0.896 8 C -0.137 4.137 9 C -0.166 4.166 10 C 0.293 3.707 11 O -0.473 6.473 12 N -0.371 5.371 13 C 0.007 3.993 14 C -0.115 4.115 15 C -0.122 4.122 16 C -0.195 4.195 17 C 0.081 3.919 18 N -0.339 5.339 19 C -0.390 4.390 20 H 0.090 0.910 21 C -0.251 4.251 22 N -0.589 5.589 23 Si 0.800 3.200 24 H -0.200 1.200 25 H -0.220 1.220 26 H -0.203 1.203 27 C 0.009 3.991 28 C -0.125 4.125 29 O -0.317 6.317 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.116 0.884 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.140 0.860 40 H 0.125 0.875 41 H 0.255 0.745 42 H 0.062 0.938 43 H 0.076 0.924 44 H 0.113 0.887 45 H 0.101 0.899 46 H 0.130 0.870 47 H 0.019 0.981 48 H 0.073 0.927 49 H 0.058 0.942 50 H 0.078 0.922 51 H 0.034 0.966 52 H 0.088 0.912 53 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -20.788 1.486 -28.002 34.907 hybrid contribution 0.426 0.164 1.317 1.393 sum -20.363 1.650 -26.685 33.608 Atomic orbital electron populations 1.22113 0.94092 1.02681 1.02670 1.22864 0.94978 0.96253 0.85127 0.90896 1.23179 0.97668 0.99953 0.97550 1.23322 0.98583 1.01944 0.95333 1.23065 0.91757 0.89456 0.93354 0.89588 1.21438 0.96620 1.01958 0.93733 1.21644 0.95452 1.05429 0.94124 1.21425 0.91240 0.75159 0.82873 1.90698 1.26944 1.52814 1.76816 1.45977 1.10943 1.69081 1.11088 1.21134 0.88779 1.00199 0.89141 1.20800 0.95636 1.03233 0.91859 1.20606 0.98222 0.95647 0.97716 1.22823 0.99152 0.98990 0.98512 1.19343 0.90993 0.85288 0.96239 1.44434 1.75928 1.11035 1.02476 1.19526 1.38751 0.92246 0.88493 0.91043 1.25812 0.99706 0.96879 1.02694 1.70199 1.50031 1.07525 1.31102 0.85259 0.78106 0.77092 0.79504 1.20013 1.22050 1.20333 1.21182 0.95237 0.95405 0.87271 1.20713 0.96241 0.94751 1.00796 1.88422 1.70759 1.41087 1.31426 0.92094 0.92749 0.90132 0.89107 0.89274 0.91043 0.88394 0.92895 0.90225 0.86039 0.87463 0.74514 0.93777 0.92414 0.88737 0.89935 0.87038 0.98126 0.92669 0.94150 0.92168 0.96572 0.91160 0.89608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.45 71.98 0.68 -0.76 16 2 C 0.07 0.76 4.15 31.06 0.13 0.89 16 3 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 4 C -0.15 -1.16 6.54 31.85 0.21 -0.95 16 5 C -0.15 -1.54 6.57 32.05 0.21 -1.33 16 6 C 0.08 1.02 3.40 31.26 0.11 1.12 16 7 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 8 C -0.10 -1.62 4.23 30.59 0.13 -1.49 16 9 C -0.13 -1.82 5.63 29.85 0.17 -1.65 16 10 C 0.50 11.34 7.83 87.66 0.69 12.02 16 11 O -0.59 -19.30 15.98 -3.01 -0.05 -19.35 16 12 N -0.72 -13.55 5.56 -463.07 -2.57 -16.12 16 13 C 0.13 3.23 5.66 86.38 0.49 3.71 16 14 C -0.08 -1.78 5.32 29.85 0.16 -1.62 16 15 C -0.12 -4.02 5.11 -15.14 -0.08 -4.10 16 16 C -0.18 -6.93 9.47 27.11 0.26 -6.68 16 17 C 0.21 10.60 5.22 85.42 0.45 11.05 16 18 N -0.61 -32.34 3.01 -703.06 -2.12 -34.46 16 19 C -0.26 -14.77 9.72 84.03 0.82 -13.95 16 20 H 0.07 3.89 7.88 -2.91 -0.02 3.87 16 21 C -0.06 -3.23 5.01 84.86 0.43 -2.81 16 22 N -0.94 -57.44 11.08 21.65 0.24 -57.20 16 23 Si 0.97 45.78 29.58 68.60 2.03 47.81 16 24 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 25 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 26 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 27 C 0.13 5.76 6.58 86.23 0.57 6.33 16 28 C -0.09 -2.91 5.94 29.65 0.18 -2.73 16 29 O -0.40 -6.44 10.47 -148.98 -1.56 -8.00 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.09 0.51 7.86 -2.39 -0.02 0.49 16 35 H 0.07 0.85 8.06 -2.38 -0.02 0.83 16 36 H 0.10 0.68 8.14 -2.39 -0.02 0.67 16 37 H 0.05 1.12 8.10 -2.39 -0.02 1.11 16 38 H 0.08 1.33 8.10 -2.39 -0.02 1.31 16 39 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.11 1.42 7.99 -2.39 -0.02 1.40 16 41 H 0.42 4.80 8.47 -92.71 -0.79 4.02 16 42 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.06 1.56 8.09 -2.39 -0.02 1.54 16 44 H 0.09 1.75 8.11 -2.39 -0.02 1.73 16 45 H 0.08 1.71 7.78 -2.39 -0.02 1.69 16 46 H 0.11 3.88 7.73 -2.91 -0.02 3.85 16 47 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 48 H 0.06 3.16 6.41 -2.39 -0.02 3.14 16 49 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 50 H 0.06 2.48 7.97 -2.39 -0.02 2.46 16 51 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 52 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 53 H 0.09 2.38 8.08 -2.38 -0.02 2.36 16 Total: -1.00 -75.19 419.48 1.63 -73.57 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.08 Total: 16.66 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: 5.58 Total: -2.92 kcal Atomic # 7 Polarization: -103.32 SS G_CDS: -4.45 Total: -107.77 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -1.61 Total: -27.35 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -75.19 1.63 -73.57 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161914990.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.639 kcal (2) G-P(sol) polarization free energy of solvation -75.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds