Wall clock time and date at job start Tue Mar 31 2020 21:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 120.00156 * 2 1 4 4 C 1.50698 * 119.99805 * 179.97438 * 2 1 3 5 5 H 1.09003 * 110.41970 * 128.42502 * 4 2 1 6 6 O 1.44787 * 110.48803 * 5.97220 * 4 2 1 7 7 C 1.44422 * 105.29708 * 200.67189 * 6 4 2 8 8 C 1.54487 * 104.80402 * 40.54545 * 7 6 4 9 9 C 1.54474 * 110.37516 * 250.73708 * 4 2 1 10 10 H 1.09007 * 110.51117 * 261.58897 * 9 4 2 11 11 C 1.50700 * 110.51446 * 24.16431 * 9 4 2 12 12 O 1.21279 * 119.99688 * 48.77430 * 11 9 4 13 13 N 1.34777 * 119.99916 * 228.50056 * 11 9 4 14 14 C 1.48146 * 127.84129 * 354.59903 * 13 11 9 15 15 C 1.54784 * 104.41908 * 140.36611 * 14 13 11 16 16 H 1.09004 * 110.19945 * 142.93696 * 15 14 13 17 17 C 1.53001 * 110.61260 * 265.17544 * 15 14 13 18 18 C 1.54291 * 104.92140 * 24.16402 * 15 14 13 19 19 C 1.52995 * 110.43030 * 240.89041 * 18 15 14 20 20 C 1.53001 * 110.34036 * 118.67941 * 18 15 14 21 21 N 1.46500 * 109.46881 * 183.00950 * 20 18 15 22 22 C 1.36939 * 120.00178 * 179.97438 * 21 20 18 23 23 H 1.07995 * 119.99878 * 359.97438 * 22 21 20 24 24 C 1.38812 * 120.00066 * 179.97438 * 22 21 20 25 25 N 1.31623 * 120.00048 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00149 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47026 * 59.99991 * 26 24 22 28 28 H 1.48496 * 109.47229 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.47073 * 300.00176 * 26 24 22 30 30 C 1.48148 * 127.83260 * 174.91589 * 13 11 9 31 31 H 1.07997 * 120.00406 * 180.02562 * 1 2 3 32 32 H 1.08001 * 119.99915 * 0.02562 * 1 2 3 33 33 H 1.08995 * 109.46706 * 274.86778 * 3 2 1 34 34 H 1.08998 * 109.46860 * 34.86730 * 3 2 1 35 35 H 1.09005 * 109.46803 * 154.86687 * 3 2 1 36 36 H 1.09000 * 110.37366 * 281.71743 * 7 6 4 37 37 H 1.08999 * 110.46896 * 159.42266 * 7 6 4 38 38 H 1.09004 * 110.50999 * 217.37817 * 8 7 6 39 39 H 1.08999 * 110.50953 * 94.66269 * 8 7 6 40 40 H 1.09006 * 110.40142 * 259.19900 * 14 13 11 41 41 H 1.08995 * 110.40579 * 21.62603 * 14 13 11 42 42 H 1.09007 * 109.47082 * 176.00086 * 17 15 14 43 43 H 1.08997 * 109.47180 * 295.99837 * 17 15 14 44 44 H 1.08999 * 109.46662 * 56.00542 * 17 15 14 45 45 H 1.09004 * 109.47128 * 177.04323 * 19 18 15 46 46 H 1.08999 * 109.47218 * 297.04177 * 19 18 15 47 47 H 1.09006 * 109.47001 * 57.04344 * 19 18 15 48 48 H 1.08996 * 109.47158 * 303.00269 * 20 18 15 49 49 H 1.08999 * 109.47220 * 63.00984 * 20 18 15 50 50 H 0.97009 * 120.00105 * 359.97438 * 21 20 18 51 51 H 0.97004 * 120.00200 * 180.02562 * 25 24 22 52 52 H 1.09003 * 110.40927 * 338.36711 * 30 13 11 53 53 H 1.08995 * 110.40880 * 100.80255 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3051 0.0006 5 1 2.8034 -1.3174 -0.7997 6 8 1.1486 -2.4185 -0.1400 7 6 1.8669 -3.5673 0.3599 8 6 2.6154 -3.0519 1.6092 9 6 2.7461 -1.5314 1.3677 10 1 3.7957 -1.2407 1.3233 11 6 2.0316 -0.7618 2.4486 12 8 0.8249 -0.8328 2.5469 13 7 2.7342 0.0010 3.3093 14 6 4.2063 0.1231 3.4226 15 6 4.4489 1.6286 3.6882 16 1 5.2742 1.7591 4.3882 17 6 4.7407 2.3662 2.3799 18 6 3.1324 2.1395 4.3099 19 6 2.5141 3.2285 3.4310 20 6 3.3833 2.6749 5.7210 21 7 2.1116 3.0880 6.3198 22 6 2.0874 3.6025 7.5886 23 1 3.0056 3.7034 8.1480 24 6 0.8825 3.9944 8.1557 25 7 -0.2367 3.8710 7.4741 26 14 0.8493 4.6956 9.8868 27 1 1.6865 5.9209 9.9406 28 1 -0.5483 5.0350 10.2566 29 1 1.3833 3.6890 10.8389 30 6 2.2096 0.9028 4.3612 31 1 -0.5401 -0.9352 0.0004 32 1 -0.5400 0.9353 -0.0004 33 1 2.1697 1.6633 -1.0239 34 1 1.5150 2.0413 0.5875 35 1 3.0510 1.1545 0.4365 36 1 2.5760 -3.9257 -0.3863 37 1 1.1724 -4.3613 0.6344 38 1 3.6003 -3.5133 1.6817 39 1 2.0339 -3.2469 2.5103 40 1 4.5744 -0.4764 4.2552 41 1 4.6856 -0.1818 2.4924 42 1 4.8381 3.4336 2.5785 43 1 5.6693 1.9904 1.9503 44 1 3.9226 2.2002 1.6790 45 1 1.5603 3.5408 3.8564 46 1 3.1882 4.0837 3.3839 47 1 2.3531 2.8369 2.4265 48 1 3.8351 1.8930 6.3313 49 1 4.0562 3.5309 5.6706 50 1 1.2868 2.9970 5.8174 51 1 -1.0786 4.1452 7.8702 52 1 1.1808 1.1869 4.1399 53 1 2.2707 0.4233 5.3381 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182870018.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:56 Heat of formation + Delta-G solvation = -62.895659 kcal Electronic energy + Delta-G solvation = -31856.510579 eV Core-core repulsion = 27921.277012 eV Total energy + Delta-G solvation = -3935.233567 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.89976 -40.58817 -38.75014 -36.46790 -35.95498 -34.57835 -33.26036 -33.02126 -31.19689 -29.74332 -28.73307 -27.92900 -27.27860 -26.59683 -25.16993 -24.38369 -22.97813 -22.28803 -20.51312 -19.83774 -19.49300 -18.77975 -18.35676 -17.24252 -17.09974 -16.75467 -16.51162 -16.44426 -15.85367 -15.60581 -15.48061 -15.18266 -14.82819 -14.73654 -14.65732 -14.39953 -14.19720 -13.97443 -13.82297 -13.47992 -13.18368 -13.06583 -13.00868 -12.90383 -12.81105 -12.67476 -12.59202 -12.42690 -12.36623 -12.18821 -12.13219 -12.07889 -11.91800 -11.83686 -11.46378 -11.32357 -11.14422 -10.92509 -10.78725 -10.66009 -9.92269 -9.55651 -8.97664 -7.93831 -5.22409 1.32398 1.45647 1.48996 1.55172 1.66680 1.96029 2.56068 2.87350 3.32250 3.39602 3.47915 3.59769 3.67333 3.81521 3.85872 4.00915 4.13736 4.18768 4.21959 4.27559 4.28597 4.32668 4.35751 4.37894 4.52730 4.59947 4.63577 4.70699 4.75929 4.79797 4.81920 4.83718 4.86588 4.87556 4.93108 5.00145 5.02947 5.08327 5.10411 5.11587 5.15001 5.19127 5.34255 5.41959 5.48035 5.52521 5.63147 5.67328 5.78381 6.12274 6.27407 6.68311 7.26568 7.33866 8.11951 8.33273 9.29583 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016645 B = 0.003130 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.788716 B = 8942.432335 C = 9261.032513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.148 4.148 3 C -0.110 4.110 4 C 0.131 3.869 5 H 0.118 0.882 6 O -0.392 6.392 7 C 0.042 3.958 8 C -0.136 4.136 9 C -0.127 4.127 10 H 0.140 0.860 11 C 0.537 3.463 12 O -0.575 6.575 13 N -0.617 5.617 14 C 0.102 3.898 15 C -0.089 4.089 16 H 0.101 0.899 17 C -0.145 4.145 18 C -0.064 4.064 19 C -0.122 4.122 20 C 0.166 3.834 21 N -0.744 5.744 22 C -0.242 4.242 23 H 0.078 0.922 24 C -0.078 4.078 25 N -0.972 5.972 26 Si 0.973 3.027 27 H -0.276 1.276 28 H -0.299 1.299 29 H -0.278 1.278 30 C 0.129 3.871 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.046 0.954 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.125 0.875 39 H 0.053 0.947 40 H 0.083 0.917 41 H 0.116 0.884 42 H 0.056 0.944 43 H 0.083 0.917 44 H 0.057 0.943 45 H 0.020 0.980 46 H 0.067 0.933 47 H 0.065 0.935 48 H 0.023 0.977 49 H 0.029 0.971 50 H 0.372 0.628 51 H 0.249 0.751 52 H 0.038 0.962 53 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.924 -12.765 -19.518 28.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.149 4.149 3 C -0.166 4.166 4 C 0.074 3.926 5 H 0.135 0.865 6 O -0.311 6.311 7 C -0.034 4.034 8 C -0.174 4.174 9 C -0.148 4.148 10 H 0.158 0.842 11 C 0.327 3.673 12 O -0.453 6.453 13 N -0.350 5.350 14 C -0.020 4.020 15 C -0.109 4.109 16 H 0.119 0.881 17 C -0.201 4.201 18 C -0.065 4.065 19 C -0.180 4.180 20 C 0.040 3.960 21 N -0.386 5.386 22 C -0.374 4.374 23 H 0.096 0.904 24 C -0.270 4.270 25 N -0.623 5.623 26 Si 0.802 3.198 27 H -0.202 1.202 28 H -0.226 1.226 29 H -0.204 1.204 30 C 0.005 3.995 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.143 0.857 39 H 0.072 0.928 40 H 0.101 0.899 41 H 0.134 0.866 42 H 0.076 0.924 43 H 0.102 0.898 44 H 0.076 0.924 45 H 0.039 0.961 46 H 0.086 0.914 47 H 0.084 0.916 48 H 0.041 0.959 49 H 0.046 0.954 50 H 0.204 0.796 51 H 0.058 0.942 52 H 0.057 0.943 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 16.092 -12.820 -19.468 28.325 hybrid contribution -1.455 0.626 1.596 2.249 sum 14.637 -12.194 -17.871 26.121 Atomic orbital electron populations 1.23472 0.96425 1.00738 0.99482 1.21686 0.95555 0.95302 1.02312 1.20857 1.00136 0.92700 1.02930 1.21875 0.90546 0.85287 0.94910 0.86450 1.89211 1.39359 1.17960 1.84585 1.23597 0.96272 0.88924 0.94593 1.22956 1.03568 0.91592 0.99248 1.22826 1.02357 0.96644 0.93014 0.84243 1.20493 0.86800 0.78449 0.81552 1.90741 1.16487 1.64692 1.73413 1.49103 1.08995 1.43323 1.33594 1.22886 0.78729 0.96370 1.04010 1.22208 0.95557 0.94170 0.98932 0.88061 1.22000 1.02302 1.00389 0.95439 1.21553 0.96108 0.93807 0.95074 1.21792 0.99489 0.97955 0.98717 1.20910 0.87895 0.96169 0.91050 1.42623 1.05076 1.75881 1.15063 1.19629 0.93359 1.32201 0.92247 0.90365 1.25576 0.95265 1.03686 1.02467 1.69839 0.97930 1.55567 1.38978 0.85214 0.76003 0.78523 0.80040 1.20160 1.22566 1.20375 1.22049 0.97225 0.90071 0.90126 0.89506 0.89525 0.89498 0.93486 0.90052 0.88770 0.89087 0.85668 0.92802 0.89874 0.86558 0.92450 0.89794 0.92399 0.96082 0.91429 0.91605 0.95874 0.95356 0.79573 0.94231 0.94335 0.93113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.95 12.36 67.78 0.84 -4.11 16 2 C -0.15 -3.65 3.62 -16.49 -0.06 -3.71 16 3 C -0.11 -2.15 9.54 71.24 0.68 -1.47 16 4 C 0.13 2.59 3.44 30.35 0.10 2.69 16 5 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 6 O -0.39 -9.47 9.84 -148.98 -1.47 -10.94 16 7 C 0.04 0.66 7.63 72.49 0.55 1.22 16 8 C -0.14 -2.07 6.72 31.61 0.21 -1.86 16 9 C -0.13 -2.26 3.09 -10.53 -0.03 -2.29 16 10 H 0.14 1.31 6.07 -2.38 -0.01 1.29 16 11 C 0.54 15.21 5.24 87.66 0.46 15.67 16 12 O -0.57 -22.82 15.10 -3.03 -0.05 -22.87 16 13 N -0.62 -16.17 3.31 -807.17 -2.67 -18.84 16 14 C 0.10 1.67 6.51 86.67 0.56 2.23 16 15 C -0.09 -1.68 3.30 -9.75 -0.03 -1.72 16 16 H 0.10 1.70 7.71 -2.38 -0.02 1.69 16 17 C -0.14 -2.10 7.95 71.98 0.57 -1.53 16 18 C -0.06 -1.93 0.73 -51.27 -0.04 -1.97 16 19 C -0.12 -3.86 7.08 71.98 0.51 -3.35 16 20 C 0.17 6.33 4.85 86.38 0.42 6.75 16 21 N -0.74 -37.96 5.12 -343.46 -1.76 -39.72 16 22 C -0.24 -13.65 9.99 84.03 0.84 -12.81 16 23 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 24 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 25 N -0.97 -61.73 13.06 21.65 0.28 -61.45 16 26 Si 0.97 47.07 29.55 68.60 2.03 49.10 16 27 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 28 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 29 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 30 C 0.13 4.51 5.53 86.54 0.48 4.99 16 31 H 0.09 2.91 6.91 -2.91 -0.02 2.89 16 32 H 0.09 2.58 8.05 -2.91 -0.02 2.56 16 33 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.05 1.13 7.24 -2.39 -0.02 1.11 16 35 H 0.08 1.26 5.98 -2.38 -0.01 1.24 16 36 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.05 1.15 7.73 -2.39 -0.02 1.13 16 40 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 41 H 0.12 0.99 6.02 -2.39 -0.01 0.98 16 42 H 0.06 0.94 6.91 -2.38 -0.02 0.92 16 43 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.06 0.91 4.49 -2.39 -0.01 0.89 16 45 H 0.02 0.82 6.99 -2.39 -0.02 0.81 16 46 H 0.07 1.94 6.99 -2.39 -0.02 1.93 16 47 H 0.07 1.84 5.76 -2.38 -0.01 1.82 16 48 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.37 20.81 6.27 -92.70 -0.58 20.23 16 51 H 0.25 15.44 8.31 -92.71 -0.77 14.67 16 52 H 0.04 1.67 7.65 -2.39 -0.02 1.65 16 53 H 0.05 1.98 7.86 -2.39 -0.02 1.96 16 Total: -1.00 -79.86 398.46 3.22 -76.64 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: 0.32 Total: 33.45 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: 6.54 Total: -5.38 kcal Atomic # 7 Polarization: -115.86 SS G_CDS: -4.15 Total: -120.01 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -1.51 Total: -33.81 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -79.86 3.22 -76.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182870018.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.748 kcal (2) G-P(sol) polarization free energy of solvation -79.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds