Wall clock time and date at job start Tue Mar 31 2020 20:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46992 * 2 1 4 4 C 1.53005 * 109.47351 * 119.99357 * 2 1 3 5 5 C 1.52996 * 109.47351 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.47137 * 300.00582 * 5 4 2 7 7 C 1.52992 * 109.47520 * 59.99736 * 6 5 4 8 8 H 1.08996 * 109.47176 * 60.00125 * 7 6 5 9 9 N 1.46502 * 109.47383 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00109 * 59.99889 * 9 7 6 11 11 C 1.34775 * 119.99813 * 239.99987 * 9 7 6 12 12 O 1.21351 * 120.00229 * 5.06672 * 11 9 7 13 13 C 1.49454 * 119.99895 * 185.06369 * 11 9 7 14 14 O 1.21344 * 119.99923 * 85.07632 * 13 11 9 15 15 N 1.34776 * 119.99920 * 265.07458 * 13 11 9 16 16 C 1.46932 * 120.63257 * 354.69543 * 15 13 11 17 17 C 1.53622 * 108.54077 * 126.36609 * 16 15 13 18 18 C 1.53041 * 109.23995 * 54.86260 * 17 16 15 19 19 C 1.50702 * 109.46243 * 178.49180 * 18 17 16 20 20 H 1.07994 * 120.00303 * 120.06540 * 19 18 17 21 21 C 1.37885 * 119.99657 * 300.06459 * 19 18 17 22 22 N 1.31518 * 119.99661 * 359.97438 * 21 19 18 23 23 Si 1.86789 * 119.99981 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47420 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47468 * 120.00188 * 23 21 19 26 26 H 1.48501 * 109.47365 * 239.99802 * 23 21 19 27 27 C 1.53050 * 109.53792 * 298.50589 * 18 17 16 28 28 C 1.46923 * 120.63176 * 174.97917 * 15 13 11 29 29 C 1.52996 * 109.47258 * 239.99743 * 2 1 3 30 30 H 1.09006 * 109.46976 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47211 * 300.00305 * 1 2 3 32 32 H 1.08997 * 109.47175 * 60.00745 * 1 2 3 33 33 H 1.08995 * 109.47183 * 300.00797 * 4 2 1 34 34 H 1.09006 * 109.46547 * 60.00371 * 4 2 1 35 35 H 1.09001 * 109.46922 * 180.02562 * 5 4 2 36 36 H 1.08996 * 109.46973 * 60.00098 * 5 4 2 37 37 H 1.09006 * 109.46783 * 299.99623 * 6 5 4 38 38 H 1.08997 * 109.47158 * 180.02562 * 6 5 4 39 39 H 1.08999 * 109.47336 * 85.18791 * 10 9 7 40 40 H 1.08998 * 109.47128 * 205.19128 * 10 9 7 41 41 H 1.09001 * 109.47024 * 325.18795 * 10 9 7 42 42 H 1.08995 * 109.58408 * 246.20482 * 16 15 13 43 43 H 1.08998 * 109.58369 * 6.62722 * 16 15 13 44 44 H 1.08995 * 109.64006 * 294.87153 * 17 16 15 45 45 H 1.08995 * 109.43270 * 174.72532 * 17 16 15 46 46 H 1.08993 * 109.46532 * 58.52799 * 18 17 16 47 47 H 0.97001 * 119.99846 * 179.97438 * 22 21 19 48 48 H 1.09001 * 109.49660 * 301.41645 * 27 18 17 49 49 H 1.08998 * 109.49959 * 181.32010 * 27 18 17 50 50 H 1.09000 * 109.58385 * 353.37120 * 28 15 13 51 51 H 1.08993 * 109.59112 * 113.79365 * 28 15 13 52 52 H 1.08997 * 109.47426 * 59.99665 * 29 2 1 53 53 H 1.09006 * 109.46882 * 299.99758 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5700 -0.7217 1.2490 6 6 4.0795 -1.4433 -0.0002 7 6 3.5695 -0.7222 -1.2495 8 1 3.9332 0.3053 -1.2498 9 7 4.0569 -1.4136 -2.4456 10 6 3.7019 -2.8160 -2.6769 11 6 4.8318 -0.7594 -3.3333 12 8 5.2018 0.3720 -3.0978 13 6 5.2354 -1.4275 -4.6078 14 8 4.4971 -1.3948 -5.5702 15 7 6.4195 -2.0662 -4.6882 16 6 7.3741 -2.0168 -3.5724 17 6 7.7531 -3.4554 -3.1896 18 6 8.2734 -4.1867 -4.4293 19 6 8.6815 -5.5874 -4.0517 20 1 8.2028 -6.4343 -4.5205 21 6 9.6662 -5.7876 -3.1075 22 7 10.2496 -4.7561 -2.5370 23 14 10.1727 -7.5236 -2.6399 24 1 9.3711 -8.5003 -3.4202 25 1 11.6147 -7.7159 -2.9378 26 1 9.9345 -7.7351 -1.1895 27 6 7.1709 -4.2453 -5.4893 28 6 6.7829 -2.8202 -5.8958 29 6 2.0400 -0.7213 -1.2492 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.6766 -0.2073 2.1392 34 1 1.6767 -1.7489 1.2493 35 1 3.9333 -1.2358 2.1389 36 1 3.9337 0.3058 1.2487 37 1 3.7158 -2.4709 0.0001 38 1 5.1695 -1.4441 -0.0002 39 1 2.7326 -2.8685 -3.1725 40 1 4.4583 -3.2830 -3.3076 41 1 3.6508 -3.3400 -1.7224 42 1 8.2659 -1.4700 -3.8785 43 1 6.9131 -1.5195 -2.7190 44 1 6.8765 -3.9745 -2.8022 45 1 8.5310 -3.4347 -2.4264 46 1 9.1350 -3.6534 -4.8306 47 1 10.9421 -4.8970 -1.8725 48 1 6.2997 -4.7569 -5.0802 49 1 7.5344 -4.7866 -6.3627 50 1 5.9317 -2.8532 -6.5759 51 1 7.6275 -2.3376 -6.3875 52 1 1.6766 -0.2076 -2.1392 53 1 1.6767 -1.7490 -1.2491 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261307984.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:47 Heat of formation + Delta-G solvation = -108.514407 kcal Electronic energy + Delta-G solvation = -31243.652301 eV Core-core repulsion = 27306.440556 eV Total energy + Delta-G solvation = -3937.211745 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.21996 -40.56304 -39.24584 -38.48855 -36.53704 -35.41764 -33.30119 -33.10257 -31.86205 -31.14815 -28.48093 -28.01842 -27.30173 -26.26421 -24.43713 -23.93886 -22.99292 -22.06873 -21.05560 -20.54252 -19.89372 -18.92009 -18.27915 -18.13756 -17.74552 -16.53720 -16.43389 -16.26869 -15.96343 -15.74109 -15.39529 -15.12540 -14.93955 -14.89863 -14.60892 -14.46377 -14.32030 -14.08442 -14.04368 -13.63463 -13.44188 -13.31828 -13.23840 -13.20836 -12.82858 -12.78111 -12.67624 -12.50653 -12.43116 -12.16186 -12.07810 -11.95574 -11.83997 -11.50398 -11.44956 -11.32542 -11.13433 -11.03284 -10.91797 -10.62880 -10.39462 -9.90107 -9.79155 -8.06149 -6.18970 0.91048 0.92195 1.42533 1.44900 1.47048 1.55968 2.19001 2.46196 3.00909 3.21406 3.63087 3.74696 3.86220 3.91635 4.04213 4.07832 4.18314 4.19741 4.28042 4.35424 4.37845 4.43072 4.48554 4.51873 4.55178 4.56679 4.60966 4.70410 4.78896 4.79246 4.81882 4.91218 4.96463 5.03928 5.06704 5.14185 5.14462 5.18809 5.23323 5.29564 5.34739 5.36612 5.40412 5.42650 5.43774 5.57081 5.65273 5.91140 5.98016 6.06836 6.12321 6.39252 6.58618 6.63625 6.91450 7.49412 8.97669 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012966 B = 0.003308 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.985241 B = 8462.012901 C = 9767.792847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 H 0.065 0.935 4 C -0.110 4.110 5 C -0.113 4.113 6 C -0.125 4.125 7 C 0.136 3.864 8 H 0.081 0.919 9 N -0.584 5.584 10 C 0.067 3.933 11 C 0.518 3.482 12 O -0.551 6.551 13 C 0.514 3.486 14 O -0.552 6.552 15 N -0.580 5.580 16 C 0.115 3.885 17 C -0.106 4.106 18 C 0.044 3.956 19 C -0.527 4.527 20 H 0.053 0.947 21 C 0.017 3.983 22 N -0.913 5.913 23 Si 0.947 3.053 24 H -0.269 1.269 25 H -0.286 1.286 26 H -0.282 1.282 27 C -0.110 4.110 28 C 0.114 3.886 29 C -0.115 4.115 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.081 0.919 38 H 0.052 0.948 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.105 0.895 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.041 0.959 45 H 0.079 0.921 46 H 0.002 0.998 47 H 0.260 0.740 48 H 0.054 0.946 49 H 0.072 0.928 50 H 0.091 0.909 51 H 0.075 0.925 52 H 0.054 0.946 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.131 5.736 7.648 19.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 H 0.083 0.917 4 C -0.148 4.148 5 C -0.151 4.151 6 C -0.163 4.163 7 C 0.035 3.965 8 H 0.099 0.901 9 N -0.316 5.316 10 C -0.074 4.074 11 C 0.300 3.700 12 O -0.429 6.429 13 C 0.297 3.703 14 O -0.430 6.430 15 N -0.313 5.313 16 C -0.007 4.007 17 C -0.144 4.144 18 C 0.025 3.975 19 C -0.565 4.565 20 H 0.071 0.929 21 C -0.181 4.181 22 N -0.553 5.553 23 Si 0.774 3.226 24 H -0.193 1.193 25 H -0.212 1.212 26 H -0.208 1.208 27 C -0.148 4.148 28 C -0.008 4.008 29 C -0.154 4.154 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.124 0.876 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.060 0.940 45 H 0.097 0.903 46 H 0.020 0.980 47 H 0.069 0.931 48 H 0.073 0.927 49 H 0.091 0.909 50 H 0.110 0.890 51 H 0.093 0.907 52 H 0.072 0.928 53 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.185 6.356 7.385 19.755 hybrid contribution 0.949 -0.732 0.017 1.198 sum -16.236 5.624 7.403 18.709 Atomic orbital electron populations 1.21785 0.93912 1.02342 1.02005 1.21089 0.96412 0.99269 0.93869 0.91677 1.21612 0.94464 1.01302 0.97398 1.21484 0.96391 1.00578 0.96690 1.21873 1.00377 1.00513 0.93546 1.21362 0.95285 0.97046 0.82854 0.90109 1.48005 1.48655 1.13391 1.21566 1.22083 1.01708 0.79431 1.04224 1.20261 0.79328 0.86448 0.83925 1.90745 1.56284 1.19516 1.76327 1.20314 0.82277 0.78805 0.88915 1.90724 1.53592 1.60626 1.38068 1.48328 1.16084 1.48090 1.18810 1.22015 0.91677 0.99649 0.87345 1.21835 0.99922 0.91353 1.01338 1.18635 0.92450 0.94694 0.91681 1.21526 1.19651 0.93096 1.22190 0.92871 1.25633 0.96279 0.99905 0.96333 1.69965 1.26299 1.30799 1.28256 0.85665 0.77782 0.81213 0.77916 1.19310 1.21216 1.20766 1.21861 0.99126 0.93993 0.99869 1.21851 1.01138 0.92131 0.85638 1.21898 0.92449 1.02328 0.98680 0.92055 0.91651 0.93076 0.90583 0.91020 0.90404 0.92203 0.90085 0.92887 0.90432 0.92096 0.87612 0.91333 0.91046 0.94008 0.90294 0.97993 0.93055 0.92674 0.90905 0.89040 0.90721 0.92760 0.90067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.19 71.98 0.66 -0.99 16 2 C -0.09 -1.22 2.72 -10.79 -0.03 -1.25 16 3 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 4 C -0.11 -1.33 5.20 30.59 0.16 -1.17 16 5 C -0.11 -1.68 5.92 30.59 0.18 -1.50 16 6 C -0.12 -2.36 5.17 30.59 0.16 -2.20 16 7 C 0.14 3.05 2.52 44.97 0.11 3.16 16 8 H 0.08 2.18 6.91 -2.39 -0.02 2.16 16 9 N -0.58 -15.66 2.76 -824.28 -2.28 -17.93 16 10 C 0.07 1.50 9.36 127.77 1.20 2.70 16 11 C 0.52 17.89 5.47 87.27 0.48 18.37 16 12 O -0.55 -21.78 16.40 -3.25 -0.05 -21.84 16 13 C 0.51 18.84 5.62 87.27 0.49 19.33 16 14 O -0.55 -22.17 16.53 -3.23 -0.05 -22.23 16 15 N -0.58 -20.75 2.95 -819.66 -2.42 -23.18 16 16 C 0.12 4.26 6.38 86.51 0.55 4.81 16 17 C -0.11 -4.48 5.17 30.82 0.16 -4.32 16 18 C 0.04 1.99 2.06 -11.51 -0.02 1.97 16 19 C -0.53 -26.68 8.56 25.60 0.22 -26.46 16 20 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 21 C 0.02 0.90 5.30 84.66 0.45 1.35 16 22 N -0.91 -49.16 11.31 21.45 0.24 -48.91 16 23 Si 0.95 41.20 29.54 68.60 2.03 43.22 16 24 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 25 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 26 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 27 C -0.11 -4.11 5.30 30.67 0.16 -3.95 16 28 C 0.11 3.87 6.41 86.36 0.55 4.42 16 29 C -0.12 -2.02 4.48 30.58 0.14 -1.88 16 30 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.08 1.33 6.69 -2.38 -0.02 1.32 16 38 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.06 1.62 6.79 -2.39 -0.02 1.60 16 41 H 0.11 1.82 6.45 -2.39 -0.02 1.80 16 42 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 43 H 0.07 2.54 6.29 -2.39 -0.02 2.53 16 44 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.08 3.83 6.03 -2.39 -0.01 3.82 16 46 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 47 H 0.26 13.44 8.31 -92.71 -0.77 12.67 16 48 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 49 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 50 H 0.09 2.98 7.04 -2.39 -0.02 2.96 16 51 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 52 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 53 H 0.08 1.22 7.67 -2.38 -0.02 1.20 16 Total: -1.00 -62.06 404.00 3.95 -58.11 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 0.87 Total: 20.38 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: 5.62 Total: 12.38 kcal Atomic # 7 Polarization: -85.57 SS G_CDS: -4.45 Total: -90.02 kcal Atomic # 8 Polarization: -43.96 SS G_CDS: -0.11 Total: -44.07 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.22 kcal Total: -62.06 3.95 -58.11 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261307984.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.407 kcal (2) G-P(sol) polarization free energy of solvation -62.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds