Wall clock time and date at job start Tue Mar 31 2020 20:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47219 * 2 1 4 4 C 1.53000 * 109.47213 * 240.00624 * 2 1 3 5 5 C 1.53007 * 109.47215 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.46679 * 60.00043 * 5 4 2 7 7 C 1.53000 * 109.47261 * 299.99928 * 6 5 4 8 8 H 1.09006 * 109.46813 * 299.99739 * 7 6 5 9 9 N 1.46503 * 109.47207 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99380 * 299.99302 * 9 7 6 11 11 C 1.34770 * 120.00442 * 119.99831 * 9 7 6 12 12 O 1.21350 * 119.99848 * 5.02654 * 11 9 7 13 13 C 1.49445 * 120.00100 * 185.02104 * 11 9 7 14 14 O 1.21348 * 120.00451 * 275.15584 * 13 11 9 15 15 N 1.34781 * 119.99804 * 95.15803 * 13 11 9 16 16 C 1.46931 * 120.63042 * 354.95025 * 15 13 11 17 17 C 1.53198 * 108.77138 * 126.36954 * 16 15 13 18 18 C 1.53041 * 109.31067 * 54.64056 * 17 16 15 19 19 C 1.50701 * 109.45873 * 178.61378 * 18 17 16 20 20 H 1.08002 * 120.00078 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00293 * 179.97438 * 19 18 17 22 22 N 1.31519 * 119.99594 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00327 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46710 * 60.00156 * 23 21 19 25 25 H 1.48496 * 109.47054 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47027 * 300.00257 * 23 21 19 27 27 C 1.53039 * 109.53676 * 298.62956 * 18 17 16 28 28 C 1.46930 * 120.63268 * 174.93426 * 15 13 11 29 29 C 1.52996 * 109.47467 * 120.00267 * 2 1 3 30 30 H 1.09003 * 109.46760 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47194 * 299.99408 * 1 2 3 32 32 H 1.08997 * 109.47229 * 60.00040 * 1 2 3 33 33 H 1.09002 * 109.47261 * 59.99906 * 4 2 1 34 34 H 1.09003 * 109.46952 * 299.99508 * 4 2 1 35 35 H 1.08993 * 109.47214 * 299.99864 * 5 4 2 36 36 H 1.09000 * 109.47071 * 179.97438 * 5 4 2 37 37 H 1.09004 * 109.46660 * 180.02562 * 6 5 4 38 38 H 1.09003 * 109.47536 * 60.00059 * 6 5 4 39 39 H 1.09001 * 109.47496 * 264.80011 * 10 9 7 40 40 H 1.08997 * 109.47108 * 24.80240 * 10 9 7 41 41 H 1.09003 * 109.46647 * 144.79587 * 10 9 7 42 42 H 1.09000 * 109.58418 * 6.58573 * 16 15 13 43 43 H 1.08996 * 109.70452 * 246.22898 * 16 15 13 44 44 H 1.09000 * 109.49563 * 294.68514 * 17 16 15 45 45 H 1.08999 * 109.49320 * 174.58729 * 17 16 15 46 46 H 1.08995 * 109.46112 * 58.65364 * 18 17 16 47 47 H 0.97004 * 119.99805 * 180.02562 * 22 21 19 48 48 H 1.08998 * 109.49799 * 181.32118 * 27 18 17 49 49 H 1.09000 * 109.49950 * 301.41888 * 27 18 17 50 50 H 1.08997 * 109.58175 * 353.41625 * 28 15 13 51 51 H 1.08999 * 109.58925 * 113.84012 * 28 15 13 52 52 H 1.09003 * 109.47144 * 60.00219 * 29 2 1 53 53 H 1.09003 * 109.47556 * 300.00124 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5701 -0.7205 -1.2496 6 6 4.0805 -1.4416 -0.0004 7 6 3.5705 -0.7205 1.2489 8 1 3.9335 0.3073 1.2488 9 7 4.0597 -1.4106 2.4450 10 6 3.7066 -2.8133 2.6772 11 6 4.8344 -0.7550 3.3318 12 8 5.0518 0.4301 3.1878 13 6 5.4257 -1.4876 4.4924 14 8 4.7783 -1.6398 5.5075 15 7 6.6781 -1.9791 4.4119 16 6 7.4338 -1.9002 3.1543 17 6 8.7823 -1.2279 3.4308 18 6 9.5031 -1.9813 4.5510 19 6 10.8450 -1.3431 4.8025 20 1 11.1530 -0.4865 4.2214 21 6 11.6795 -1.8529 5.7745 22 7 11.3046 -2.8964 6.4818 23 14 13.3431 -1.0623 6.0858 24 1 13.1506 0.3548 6.4854 25 1 14.0423 -1.7923 7.1736 26 1 14.1586 -1.1207 4.8461 27 6 8.6636 -1.9235 5.8293 28 6 7.3138 -2.6037 5.5800 29 6 2.0400 -0.7213 1.2491 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6767 -0.2072 -2.1393 34 1 1.6767 -1.7488 -1.2494 35 1 3.9330 0.3072 -1.2498 36 1 3.9334 -1.2347 -2.1394 37 1 5.1705 -1.4408 -0.0004 38 1 3.7175 -2.4694 -0.0003 39 1 2.8323 -2.8654 3.3260 40 1 3.4815 -3.2937 1.7250 41 1 4.5434 -3.3246 3.1532 42 1 6.8739 -1.3112 2.4279 43 1 7.5993 -2.9034 2.7615 44 1 8.6178 -0.1941 3.7347 45 1 9.3915 -1.2495 2.5272 46 1 9.6452 -3.0210 4.2565 47 1 11.8916 -3.2548 7.1659 48 1 9.1884 -2.4401 6.6329 49 1 8.5003 -0.8832 6.1106 50 1 6.6747 -2.4788 6.4541 51 1 7.4695 -3.6652 5.3874 52 1 1.6768 -1.7490 1.2491 53 1 1.6768 -0.2076 2.1392 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261307985.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:51 Heat of formation + Delta-G solvation = -109.503371 kcal Electronic energy + Delta-G solvation = -30849.984873 eV Core-core repulsion = 26912.730243 eV Total energy + Delta-G solvation = -3937.254630 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.20481 -40.55125 -39.23996 -38.50962 -36.52369 -35.46444 -33.25280 -33.01186 -32.07037 -31.09275 -28.44660 -28.00652 -27.28721 -26.24225 -24.56412 -23.88733 -22.97414 -22.07304 -21.03219 -20.53844 -19.79748 -18.98677 -18.47133 -18.06432 -17.65057 -16.59665 -16.43032 -16.22053 -15.98175 -15.71207 -15.36107 -15.11789 -14.97460 -14.90923 -14.65567 -14.51326 -14.25838 -14.06291 -13.98492 -13.61023 -13.52776 -13.37038 -13.21073 -13.08966 -12.82594 -12.76385 -12.65840 -12.52411 -12.49922 -12.20984 -12.05354 -12.00688 -11.81776 -11.47974 -11.45169 -11.29317 -11.14320 -11.11180 -10.89915 -10.63700 -10.41630 -9.88292 -9.79579 -8.09245 -6.22027 0.87538 1.01205 1.38131 1.41814 1.43285 1.50058 2.23099 2.43417 3.03505 3.17813 3.65604 3.76667 3.87975 3.89692 4.06898 4.10982 4.19032 4.21787 4.22874 4.38089 4.42094 4.45862 4.47135 4.51950 4.57256 4.62769 4.63678 4.74286 4.75388 4.80987 4.84082 4.88576 4.97231 5.05082 5.05312 5.08998 5.14969 5.17037 5.25683 5.32347 5.33843 5.39304 5.41216 5.42049 5.45558 5.58876 5.62647 5.92488 5.94774 6.04943 6.12583 6.36995 6.60712 6.65363 6.87202 7.45694 8.94331 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.022928 B = 0.002563 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.929167 B =10920.127156 C =11509.439781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 H 0.060 0.940 4 C -0.110 4.110 5 C -0.115 4.115 6 C -0.122 4.122 7 C 0.134 3.866 8 H 0.076 0.924 9 N -0.585 5.585 10 C 0.067 3.933 11 C 0.520 3.480 12 O -0.550 6.550 13 C 0.510 3.490 14 O -0.557 6.557 15 N -0.580 5.580 16 C 0.114 3.886 17 C -0.117 4.117 18 C 0.048 3.952 19 C -0.535 4.535 20 H 0.049 0.951 21 C 0.017 3.983 22 N -0.912 5.912 23 Si 0.948 3.052 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.270 1.270 27 C -0.116 4.116 28 C 0.120 3.880 29 C -0.115 4.115 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.118 0.882 41 H 0.064 0.936 42 H 0.081 0.919 43 H 0.100 0.900 44 H 0.036 0.964 45 H 0.077 0.923 46 H 0.016 0.984 47 H 0.262 0.738 48 H 0.082 0.918 49 H 0.017 0.983 50 H 0.074 0.926 51 H 0.084 0.916 52 H 0.085 0.915 53 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.533 -2.191 -17.640 27.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 H 0.079 0.921 4 C -0.148 4.148 5 C -0.153 4.153 6 C -0.160 4.160 7 C 0.032 3.968 8 H 0.094 0.906 9 N -0.317 5.317 10 C -0.075 4.075 11 C 0.303 3.697 12 O -0.428 6.428 13 C 0.293 3.707 14 O -0.436 6.436 15 N -0.312 5.312 16 C -0.008 4.008 17 C -0.155 4.155 18 C 0.029 3.971 19 C -0.573 4.573 20 H 0.067 0.933 21 C -0.182 4.182 22 N -0.551 5.551 23 Si 0.774 3.226 24 H -0.205 1.205 25 H -0.209 1.209 26 H -0.195 1.195 27 C -0.154 4.154 28 C -0.002 4.002 29 C -0.153 4.153 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.106 0.894 39 H 0.086 0.914 40 H 0.136 0.864 41 H 0.083 0.917 42 H 0.099 0.901 43 H 0.118 0.882 44 H 0.055 0.945 45 H 0.096 0.904 46 H 0.034 0.966 47 H 0.071 0.929 48 H 0.100 0.900 49 H 0.036 0.964 50 H 0.093 0.907 51 H 0.103 0.897 52 H 0.103 0.897 53 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -20.683 -1.791 -17.046 26.861 hybrid contribution 1.299 0.768 1.020 1.822 sum -19.383 -1.023 -16.025 25.171 Atomic orbital electron populations 1.21788 0.94114 1.02389 1.01821 1.21096 0.96296 0.99206 0.94205 0.92128 1.21609 0.94760 1.01344 0.97040 1.21497 0.96142 1.00586 0.97067 1.21888 1.00782 1.00609 0.92759 1.21413 0.95189 0.97125 0.83059 0.90574 1.48047 1.48417 1.13753 1.21514 1.22118 1.01546 0.79122 1.04667 1.20191 0.79858 0.87200 0.82470 1.90769 1.62173 1.15865 1.73953 1.20440 0.82744 0.78848 0.88654 1.90734 1.61624 1.58803 1.32394 1.48337 1.12982 1.55761 1.14133 1.21962 0.92526 1.02623 0.83640 1.21880 0.94877 0.98534 1.00229 1.18602 0.92440 0.95078 0.90946 1.21511 1.02288 1.14500 1.19010 0.93293 1.25646 1.01307 0.95460 0.95817 1.69935 1.37785 1.24089 1.23309 0.85766 0.80492 0.78418 0.77892 1.20458 1.20901 1.19482 1.21835 0.93385 0.97754 1.02447 1.21797 0.94024 0.97151 0.87198 1.21908 0.92752 1.02347 0.98339 0.91828 0.93398 0.91791 0.90903 0.90657 0.92597 0.89979 0.92053 0.89368 0.91395 0.86408 0.91690 0.90090 0.88211 0.94529 0.90448 0.96592 0.92906 0.89994 0.96433 0.90709 0.89735 0.89683 0.93368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.19 71.98 0.66 -0.82 16 2 C -0.09 -1.09 2.72 -10.80 -0.03 -1.12 16 3 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 4 C -0.11 -1.01 5.20 30.60 0.16 -0.85 16 5 C -0.11 -1.25 5.92 30.60 0.18 -1.07 16 6 C -0.12 -1.63 5.19 30.59 0.16 -1.47 16 7 C 0.13 2.55 2.51 45.00 0.11 2.66 16 8 H 0.08 1.90 6.91 -2.38 -0.02 1.88 16 9 N -0.58 -13.51 2.76 -824.08 -2.28 -15.78 16 10 C 0.07 1.12 9.26 127.77 1.18 2.30 16 11 C 0.52 17.21 5.45 87.27 0.48 17.68 16 12 O -0.55 -21.84 16.44 -3.25 -0.05 -21.89 16 13 C 0.51 18.76 5.69 87.27 0.50 19.25 16 14 O -0.56 -23.28 16.53 -3.24 -0.05 -23.33 16 15 N -0.58 -20.73 2.97 -820.46 -2.44 -23.16 16 16 C 0.11 3.62 6.36 86.36 0.55 4.17 16 17 C -0.12 -4.61 5.30 30.67 0.16 -4.45 16 18 C 0.05 2.28 2.06 -11.51 -0.02 2.25 16 19 C -0.54 -28.83 8.56 25.60 0.22 -28.61 16 20 H 0.05 2.63 7.74 -2.91 -0.02 2.60 16 21 C 0.02 0.91 5.30 84.65 0.45 1.36 16 22 N -0.91 -50.82 11.30 21.45 0.24 -50.58 16 23 Si 0.95 43.24 29.54 68.60 2.03 45.26 16 24 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 25 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 26 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 27 C -0.12 -5.44 5.15 30.67 0.16 -5.28 16 28 C 0.12 4.65 6.42 86.36 0.55 5.20 16 29 C -0.12 -1.75 4.49 30.61 0.14 -1.61 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.07 0.57 8.14 -2.39 -0.02 0.56 16 34 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.09 0.84 6.67 -2.39 -0.02 0.82 16 39 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.12 1.10 6.44 -2.39 -0.02 1.08 16 41 H 0.06 1.23 6.99 -2.39 -0.02 1.21 16 42 H 0.08 2.35 6.31 -2.39 -0.02 2.34 16 43 H 0.10 2.65 8.14 -2.39 -0.02 2.64 16 44 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 46 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.26 14.00 8.31 -92.71 -0.77 13.22 16 48 H 0.08 4.29 6.03 -2.39 -0.01 4.27 16 49 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 50 H 0.07 2.97 7.04 -2.39 -0.02 2.96 16 51 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 52 H 0.08 1.00 7.67 -2.39 -0.02 0.98 16 53 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -68.09 404.18 3.92 -64.17 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.87 Total: 15.72 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: 5.61 Total: 9.60 kcal Atomic # 7 Polarization: -85.05 SS G_CDS: -4.47 Total: -89.53 kcal Atomic # 8 Polarization: -45.12 SS G_CDS: -0.11 Total: -45.22 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -68.09 3.92 -64.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261307985.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.333 kcal (2) G-P(sol) polarization free energy of solvation -68.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds