Wall clock time and date at job start Tue Mar 31 2020 20:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47351 * 2 1 4 4 C 1.52999 * 109.46685 * 119.99888 * 2 1 3 5 5 C 1.53005 * 109.47014 * 180.02562 * 4 2 1 6 6 C 1.53005 * 109.46998 * 299.99782 * 5 4 2 7 7 C 1.52998 * 109.46872 * 59.99905 * 6 5 4 8 8 H 1.09001 * 109.47314 * 180.02562 * 7 6 5 9 9 N 1.46504 * 109.47335 * 59.99802 * 7 6 5 10 10 C 1.46488 * 120.00496 * 237.63189 * 9 7 6 11 11 C 1.34780 * 119.99336 * 57.90925 * 9 7 6 12 12 O 1.21345 * 120.00363 * 357.60637 * 11 9 7 13 13 C 1.49452 * 119.99571 * 177.61334 * 11 9 7 14 14 O 1.21353 * 120.00300 * 7.13069 * 13 11 9 15 15 N 1.34779 * 119.99825 * 187.13158 * 13 11 9 16 16 C 1.46927 * 120.62914 * 187.54121 * 15 13 11 17 17 C 1.52759 * 109.00673 * 233.58403 * 16 15 13 18 18 C 1.53049 * 109.38041 * 305.58826 * 17 16 15 19 19 C 1.50704 * 109.45623 * 181.26022 * 18 17 16 20 20 H 1.08000 * 120.00160 * 239.92434 * 19 18 17 21 21 C 1.37882 * 119.99982 * 59.93194 * 19 18 17 22 22 N 1.31512 * 119.99909 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99712 * 179.97438 * 21 19 18 24 24 H 1.48491 * 109.47313 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46766 * 120.00311 * 23 21 19 26 26 H 1.48502 * 109.47119 * 239.99643 * 23 21 19 27 27 C 1.53030 * 109.53967 * 61.24271 * 18 17 16 28 28 C 1.46923 * 120.63213 * 7.81821 * 15 13 11 29 29 C 1.53000 * 109.46950 * 239.99477 * 2 1 3 30 30 H 1.08997 * 109.47251 * 300.00382 * 1 2 3 31 31 H 1.09004 * 109.47170 * 60.00361 * 1 2 3 32 32 H 1.09003 * 109.47133 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47639 * 60.00229 * 4 2 1 34 34 H 1.09001 * 109.47502 * 299.99736 * 4 2 1 35 35 H 1.08998 * 109.46939 * 180.02562 * 5 4 2 36 36 H 1.08994 * 109.47269 * 59.99961 * 5 4 2 37 37 H 1.08994 * 109.47257 * 300.00187 * 6 5 4 38 38 H 1.09002 * 109.47172 * 180.02562 * 6 5 4 39 39 H 1.09001 * 109.47528 * 217.83314 * 10 9 7 40 40 H 1.09003 * 109.47057 * 337.83415 * 10 9 7 41 41 H 1.09002 * 109.47560 * 97.83174 * 10 9 7 42 42 H 1.09001 * 109.58887 * 353.41530 * 16 15 13 43 43 H 1.08999 * 109.58613 * 113.84373 * 16 15 13 44 44 H 1.08996 * 109.56431 * 185.55540 * 17 16 15 45 45 H 1.08994 * 109.36353 * 65.49459 * 17 16 15 46 46 H 1.08999 * 109.45644 * 301.21606 * 18 17 16 47 47 H 0.97003 * 120.00041 * 180.02562 * 22 21 19 48 48 H 1.08999 * 109.50115 * 178.68331 * 27 18 17 49 49 H 1.09002 * 109.52837 * 58.59819 * 27 18 17 50 50 H 1.09001 * 109.58922 * 246.16100 * 28 15 13 51 51 H 1.09003 * 109.58416 * 6.58162 * 28 15 13 52 52 H 1.08998 * 109.46778 * 60.00942 * 29 2 1 53 53 H 1.08994 * 109.47520 * 300.00419 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5699 -0.7207 1.2497 6 6 4.0805 -1.4417 0.0005 7 6 3.5705 -0.7205 -1.2488 8 1 3.9338 -1.2343 -2.1388 9 7 4.0583 0.6609 -1.2485 10 6 3.1071 1.7737 -1.3010 11 6 5.3826 0.9078 -1.2056 12 8 6.1691 -0.0126 -1.1234 13 6 5.8824 2.3153 -1.2592 14 8 5.0980 3.2400 -1.2107 15 7 7.2043 2.5576 -1.3614 16 6 7.7252 3.9269 -1.2498 17 6 8.5849 4.2335 -2.4747 18 6 9.6655 3.1593 -2.6185 19 6 10.5340 3.4770 -3.8085 20 1 10.6080 2.7750 -4.6258 21 6 11.2342 4.6639 -3.8536 22 7 11.1446 5.5185 -2.8580 23 14 12.3112 5.0574 -5.3283 24 1 12.2412 3.9406 -6.3045 25 1 11.8323 6.3072 -5.9715 26 1 13.7159 5.2375 -4.8814 27 6 9.0057 1.7932 -2.8192 28 6 8.1512 1.4582 -1.5927 29 6 2.0400 -0.7214 -1.2492 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6766 -1.7490 1.2493 34 1 1.6766 -0.2074 2.1393 35 1 3.9332 -1.2349 2.1395 36 1 3.9329 0.3070 1.2499 37 1 3.7175 -2.4694 0.0002 38 1 5.1705 -1.4418 0.0009 39 1 3.5122 2.5689 -1.9269 40 1 2.1635 1.4256 -1.7214 41 1 2.9376 2.1547 -0.2940 42 1 6.8946 4.6311 -1.2026 43 1 8.3328 4.0144 -0.3491 44 1 9.0557 5.2093 -2.3551 45 1 7.9565 4.2388 -3.3652 46 1 10.2783 3.1377 -1.7173 47 1 11.6370 6.3537 -2.8899 48 1 9.7757 1.0321 -2.9449 49 1 8.3732 1.8209 -3.7066 50 1 8.7942 1.3402 -0.7205 51 1 7.6015 0.5341 -1.7716 52 1 1.6767 -0.2075 -2.1391 53 1 1.6766 -1.7490 -1.2492 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261307987.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:59 Heat of formation + Delta-G solvation = -64.672035 kcal Electronic energy + Delta-G solvation = -31316.740048 eV Core-core repulsion = 27381.429451 eV Total energy + Delta-G solvation = -3935.310597 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.38354 -40.75293 -39.07194 -38.65017 -35.99168 -35.13512 -33.56197 -32.94348 -31.91561 -31.25927 -28.62087 -28.10581 -26.88374 -26.10740 -24.40732 -23.86741 -22.89667 -22.22639 -21.39011 -20.47365 -19.93312 -18.53106 -18.09123 -17.85101 -17.37813 -16.93919 -16.52214 -16.47336 -15.92610 -15.68636 -15.35231 -15.19990 -14.93402 -14.77864 -14.54584 -14.50442 -14.10094 -14.07099 -13.92023 -13.49986 -13.36376 -13.18021 -13.14385 -13.05099 -12.97026 -12.83177 -12.61242 -12.46769 -12.29850 -12.22195 -11.96223 -11.92301 -11.80811 -11.47551 -11.22952 -11.13109 -10.97103 -10.87737 -10.85878 -10.44235 -9.98170 -9.76053 -9.55841 -8.08907 -6.22851 0.35381 1.27670 1.39537 1.42112 1.52769 2.09694 2.37763 2.43298 3.11546 3.17331 3.72153 3.76369 3.81946 4.09847 4.17825 4.19927 4.25284 4.31544 4.34123 4.43424 4.44749 4.51092 4.55012 4.58449 4.61407 4.69412 4.71648 4.83691 4.86948 4.92166 4.95090 4.97806 4.99366 5.04183 5.10676 5.16098 5.17583 5.20152 5.29877 5.32354 5.38812 5.41510 5.43358 5.44795 5.56382 5.61780 5.68719 5.95252 5.99466 6.08072 6.27625 6.36945 6.65530 6.87383 6.94069 7.45098 8.94852 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.028654 B = 0.002550 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.927658 B =10977.548823 C =11230.715688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.121 4.121 3 H 0.085 0.915 4 C -0.106 4.106 5 C -0.115 4.115 6 C -0.136 4.136 7 C 0.142 3.858 8 H 0.078 0.922 9 N -0.567 5.567 10 C 0.064 3.936 11 C 0.508 3.492 12 O -0.523 6.523 13 C 0.494 3.506 14 O -0.543 6.543 15 N -0.572 5.572 16 C 0.117 3.883 17 C -0.110 4.110 18 C 0.043 3.957 19 C -0.532 4.532 20 H 0.050 0.950 21 C 0.013 3.987 22 N -0.915 5.915 23 Si 0.952 3.048 24 H -0.269 1.269 25 H -0.281 1.281 26 H -0.280 1.280 27 C -0.114 4.114 28 C 0.079 3.921 29 C -0.113 4.113 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.035 0.965 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.105 0.895 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.025 0.975 46 H 0.002 0.998 47 H 0.261 0.739 48 H 0.068 0.932 49 H 0.043 0.957 50 H 0.065 0.935 51 H 0.140 0.860 52 H 0.082 0.918 53 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.473 -13.673 6.723 27.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.139 4.139 3 H 0.103 0.897 4 C -0.144 4.144 5 C -0.153 4.153 6 C -0.174 4.174 7 C 0.041 3.959 8 H 0.095 0.905 9 N -0.299 5.299 10 C -0.077 4.077 11 C 0.291 3.709 12 O -0.402 6.402 13 C 0.278 3.722 14 O -0.423 6.423 15 N -0.303 5.303 16 C -0.005 4.005 17 C -0.149 4.149 18 C 0.025 3.975 19 C -0.570 4.570 20 H 0.069 0.931 21 C -0.185 4.185 22 N -0.555 5.555 23 Si 0.778 3.222 24 H -0.194 1.194 25 H -0.207 1.207 26 H -0.206 1.206 27 C -0.152 4.152 28 C -0.042 4.042 29 C -0.151 4.151 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.054 0.946 37 H 0.108 0.892 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.124 0.876 41 H 0.083 0.917 42 H 0.101 0.899 43 H 0.085 0.915 44 H 0.097 0.903 45 H 0.044 0.956 46 H 0.021 0.979 47 H 0.070 0.930 48 H 0.086 0.914 49 H 0.062 0.938 50 H 0.083 0.917 51 H 0.156 0.844 52 H 0.100 0.900 53 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -22.429 -13.514 6.849 27.067 hybrid contribution 1.293 0.825 -0.659 1.670 sum -21.136 -12.689 6.190 25.417 Atomic orbital electron populations 1.21770 0.93895 1.02230 1.02003 1.21775 0.96591 1.01202 0.94315 0.89716 1.21544 0.93904 1.01201 0.97716 1.21431 0.96858 0.99420 0.97545 1.21943 1.01753 0.99892 0.93825 1.21413 0.95967 0.79653 0.98894 0.90452 1.47868 1.04248 1.09024 1.68753 1.22627 0.93644 0.88498 1.02901 1.19953 0.83768 0.88618 0.78569 1.90428 1.54053 1.45942 1.49818 1.20396 0.82908 0.90271 0.78632 1.90636 1.54178 1.46450 1.51006 1.48193 1.05721 1.09751 1.66682 1.21683 0.97686 0.81849 0.99257 1.21684 0.95958 1.02971 0.94276 1.18645 0.92437 0.91048 0.95401 1.21580 1.26912 1.03446 1.05047 0.93124 1.25711 0.97907 0.96303 0.98593 1.69971 1.42960 1.10007 1.32522 0.85595 0.78663 0.78006 0.79922 1.19371 1.20735 1.20590 1.21879 0.98135 0.98661 0.96555 1.22879 0.92246 0.91074 0.97989 1.21909 0.91019 1.03244 0.98879 0.92731 0.92124 0.92141 0.90943 0.92079 0.92024 0.94574 0.89162 0.91875 0.90424 0.87645 0.91665 0.89949 0.91465 0.90306 0.95634 0.97946 0.92954 0.91370 0.93814 0.91705 0.84355 0.90004 0.88338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.19 71.98 0.66 -0.59 16 2 C -0.12 -1.41 2.07 -10.79 -0.02 -1.43 16 3 H 0.08 1.20 3.79 -2.39 -0.01 1.19 16 4 C -0.11 -1.36 5.20 30.60 0.16 -1.21 16 5 C -0.11 -2.03 5.77 30.60 0.18 -1.85 16 6 C -0.14 -2.49 5.21 30.60 0.16 -2.33 16 7 C 0.14 2.50 2.99 45.01 0.13 2.63 16 8 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 9 N -0.57 -12.91 2.25 -824.08 -1.85 -14.77 16 10 C 0.06 1.28 7.28 127.77 0.93 2.21 16 11 C 0.51 15.20 7.32 87.27 0.64 15.84 16 12 O -0.52 -16.74 11.04 -3.23 -0.04 -16.78 16 13 C 0.49 17.27 7.61 87.27 0.66 17.94 16 14 O -0.54 -19.68 12.66 -3.25 -0.04 -19.72 16 15 N -0.57 -21.59 2.98 -821.30 -2.45 -24.04 16 16 C 0.12 4.76 6.41 86.22 0.55 5.31 16 17 C -0.11 -5.29 5.14 30.53 0.16 -5.14 16 18 C 0.04 2.17 2.07 -11.51 -0.02 2.14 16 19 C -0.53 -29.37 8.56 25.60 0.22 -29.15 16 20 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 21 C 0.01 0.74 5.30 84.66 0.45 1.19 16 22 N -0.91 -52.31 11.31 21.45 0.24 -52.06 16 23 Si 0.95 43.75 29.54 68.60 2.03 45.78 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 25 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 26 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 27 C -0.11 -4.79 5.30 30.67 0.16 -4.63 16 28 C 0.08 2.91 6.00 86.36 0.52 3.43 16 29 C -0.11 -1.27 4.19 30.61 0.13 -1.14 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.04 0.80 7.60 -2.39 -0.02 0.79 16 37 H 0.09 1.27 8.14 -2.39 -0.02 1.26 16 38 H 0.06 1.53 5.94 -2.39 -0.01 1.52 16 39 H 0.08 1.95 5.62 -2.39 -0.01 1.94 16 40 H 0.11 1.44 4.91 -2.39 -0.01 1.43 16 41 H 0.07 1.32 6.76 -2.39 -0.02 1.30 16 42 H 0.08 3.26 7.00 -2.39 -0.02 3.24 16 43 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 44 H 0.08 4.22 6.03 -2.39 -0.01 4.20 16 45 H 0.02 1.24 8.14 -2.39 -0.02 1.23 16 46 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 47 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 48 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 49 H 0.04 1.86 8.14 -2.39 -0.02 1.85 16 50 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 51 H 0.14 4.85 4.27 -50.75 -0.22 4.64 16 52 H 0.08 0.80 6.84 -2.39 -0.02 0.78 16 53 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -62.42 383.66 4.25 -58.17 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.69 Total: 20.17 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: 5.67 Total: 3.24 kcal Atomic # 7 Polarization: -86.81 SS G_CDS: -4.06 Total: -90.87 kcal Atomic # 8 Polarization: -36.43 SS G_CDS: -0.08 Total: -36.50 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -62.42 4.25 -58.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261307987.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.499 kcal (2) G-P(sol) polarization free energy of solvation -62.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds