Wall clock time and date at job start Tue Mar 31 2020 21:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.45885 * 2 1 4 4 C 1.53038 * 109.45971 * 240.02399 * 2 1 3 5 5 C 1.53189 * 109.31124 * 178.62797 * 4 2 1 6 6 N 1.46919 * 108.77882 * 54.63737 * 5 4 2 7 7 C 1.34780 * 120.63266 * 126.36789 * 6 5 4 8 8 O 1.21348 * 120.00147 * 174.95231 * 7 6 5 9 9 C 1.49449 * 119.99863 * 354.94864 * 7 6 5 10 10 O 1.21353 * 120.00235 * 274.76301 * 9 7 6 11 11 N 1.34777 * 119.99698 * 94.76172 * 9 7 6 12 12 C 1.46927 * 120.62993 * 184.76340 * 11 9 7 13 13 C 1.53629 * 108.54155 * 126.36962 * 12 11 9 14 14 C 1.53035 * 109.24085 * 54.86169 * 13 12 11 15 15 C 1.50697 * 109.45897 * 178.49358 * 14 13 12 16 16 H 1.08004 * 120.00307 * 120.06746 * 15 14 13 17 17 C 1.37879 * 119.99689 * 300.05953 * 15 14 13 18 18 N 1.31513 * 120.00007 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99719 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47145 * 60.00732 * 19 17 15 21 21 H 1.48504 * 109.46884 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47482 * 300.00313 * 19 17 15 23 23 C 1.53046 * 109.53659 * 298.50619 * 14 13 12 24 24 C 1.46924 * 120.63143 * 5.05057 * 11 9 7 25 25 C 1.46928 * 118.73611 * 306.64681 * 6 5 4 26 26 C 1.52753 * 109.01335 * 53.30701 * 25 6 5 27 27 C 1.52999 * 109.56895 * 185.55257 * 26 25 6 28 28 C 1.53005 * 109.38696 * 65.51246 * 26 25 6 29 29 H 1.09000 * 109.47083 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47048 * 299.97134 * 1 2 3 31 31 H 1.09001 * 109.47570 * 59.97373 * 1 2 3 32 32 H 1.08998 * 109.49461 * 58.67611 * 4 2 1 33 33 H 1.08994 * 109.52904 * 298.59850 * 4 2 1 34 34 H 1.09008 * 109.58656 * 294.84683 * 5 4 2 35 35 H 1.09001 * 109.58629 * 174.42473 * 5 4 2 36 36 H 1.08998 * 109.59066 * 246.20482 * 12 11 9 37 37 H 1.09008 * 109.58480 * 6.63531 * 12 11 9 38 38 H 1.08997 * 109.63343 * 294.86724 * 13 12 11 39 39 H 1.09000 * 109.43195 * 174.72762 * 13 12 11 40 40 H 1.08995 * 109.45371 * 58.52314 * 14 13 12 41 41 H 0.97000 * 119.99736 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.50176 * 301.42000 * 23 14 13 43 43 H 1.08996 * 109.49813 * 181.31313 * 23 14 13 44 44 H 1.08998 * 109.58431 * 353.36830 * 24 11 9 45 45 H 1.09001 * 109.58911 * 113.65330 * 24 11 9 46 46 H 1.09010 * 109.58510 * 173.14469 * 25 6 5 47 47 H 1.09001 * 109.58230 * 293.56035 * 25 6 5 48 48 H 1.08994 * 109.47512 * 179.97438 * 27 26 25 49 49 H 1.09003 * 109.46881 * 299.96411 * 27 26 25 50 50 H 1.09005 * 109.47097 * 59.96411 * 27 26 25 51 51 H 1.08996 * 109.46914 * 300.14353 * 28 26 25 52 52 H 1.09002 * 109.47037 * 60.15005 * 28 26 25 53 53 H 1.09003 * 109.46764 * 180.14707 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7210 -1.2499 5 6 3.5713 -0.6891 -1.2639 6 7 4.0676 -1.2493 0.0003 7 6 4.9610 -2.2585 0.0005 8 8 5.4325 -2.6512 1.0474 9 6 5.3709 -2.8938 -1.2886 10 8 4.7032 -3.7892 -1.7631 11 7 6.4821 -2.4722 -1.9242 12 6 6.8416 -3.0134 -3.2420 13 6 7.0444 -1.8404 -4.2131 14 6 8.0768 -0.8740 -3.6281 15 6 8.3070 0.2597 -4.5938 16 1 8.1052 1.2766 -4.2909 17 6 8.7754 -0.0011 -5.8641 18 7 9.0208 -1.2393 -6.2331 19 14 9.0613 1.4044 -7.0609 20 1 10.0647 2.3409 -6.4940 21 1 9.5620 0.8627 -8.3498 22 1 7.7843 2.1266 -7.2906 23 6 7.5602 -0.3156 -2.3001 24 6 7.3603 -1.4673 -1.3098 25 6 3.5668 -0.6927 1.2645 26 6 2.0396 -0.7208 1.2503 27 6 1.5024 -0.0188 2.4991 28 6 1.5585 -2.1732 1.2341 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5134 0.8903 31 1 -0.3634 0.5142 -0.8897 32 1 1.6574 -0.2209 -2.1397 33 1 1.6976 -1.7557 -1.2388 34 1 3.9145 0.3405 -1.3671 35 1 3.9416 -1.2851 -2.0980 36 1 7.7640 -3.5885 -3.1616 37 1 6.0387 -3.6553 -3.6048 38 1 6.0989 -1.3181 -4.3591 39 1 7.4025 -2.2197 -5.1702 40 1 9.0146 -1.4033 -3.4593 41 1 9.3499 -1.4228 -7.1269 42 1 6.6098 0.1923 -2.4641 43 1 8.2856 0.3902 -1.8955 44 1 6.8998 -1.0887 -0.3972 45 1 8.3233 -1.9195 -1.0727 46 1 3.9342 -1.2911 2.0983 47 1 3.9096 0.3365 1.3718 48 1 0.4127 -0.0394 2.4871 49 1 1.8656 -0.5325 3.3892 50 1 1.8463 1.0155 2.5107 51 1 1.9423 -2.6731 0.3449 52 1 1.9216 -2.6861 2.1247 53 1 0.4688 -2.1948 1.2213 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261326947.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:35 Heat of formation + Delta-G solvation = -100.396837 kcal Electronic energy + Delta-G solvation = -31704.953217 eV Core-core repulsion = 27768.093476 eV Total energy + Delta-G solvation = -3936.859741 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.33144 -40.79791 -39.35464 -38.50572 -35.90616 -35.43972 -33.62796 -32.99495 -32.00263 -29.71139 -28.84048 -28.23825 -27.90473 -25.85421 -24.65355 -24.09079 -23.20340 -23.06696 -21.15718 -20.01136 -19.18369 -18.92212 -18.41101 -18.01518 -17.57511 -16.53943 -16.43333 -16.12860 -16.06065 -15.89919 -15.20944 -15.16333 -14.94320 -14.72378 -14.65942 -14.56164 -14.36348 -14.16055 -14.00035 -13.53657 -13.47327 -13.07043 -13.02443 -12.88703 -12.82900 -12.77046 -12.64611 -12.53975 -12.48337 -12.19145 -12.12040 -12.02133 -11.97487 -11.66352 -11.44553 -11.24747 -11.11164 -11.09650 -10.86857 -10.66304 -10.38584 -9.85536 -9.79907 -8.05761 -6.19133 0.92647 0.95615 1.43330 1.45771 1.46637 1.53368 2.20341 2.46278 3.00153 3.21903 3.60765 3.68028 3.74096 3.88621 3.91048 4.13572 4.18754 4.23103 4.27603 4.36205 4.42902 4.46890 4.47502 4.57564 4.61819 4.69127 4.73086 4.77750 4.78510 4.82938 4.86297 4.89877 4.95783 5.04845 5.07648 5.08361 5.12096 5.18956 5.19769 5.21428 5.30283 5.35417 5.37392 5.45232 5.56784 5.59727 5.66159 5.93853 5.97443 6.07497 6.14067 6.38541 6.59752 6.64975 6.91753 7.49350 8.97895 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016044 B = 0.003226 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.733731 B = 8678.234362 C = 9418.986492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.077 4.077 3 H 0.087 0.913 4 C -0.129 4.129 5 C 0.101 3.899 6 N -0.579 5.579 7 C 0.523 3.477 8 O -0.548 6.548 9 C 0.510 3.490 10 O -0.557 6.557 11 N -0.580 5.580 12 C 0.117 3.883 13 C -0.108 4.108 14 C 0.046 3.954 15 C -0.529 4.529 16 H 0.056 0.944 17 C 0.015 3.985 18 N -0.916 5.916 19 Si 0.949 3.051 20 H -0.273 1.273 21 H -0.290 1.290 22 H -0.272 1.272 23 C -0.109 4.109 24 C 0.111 3.889 25 C 0.114 3.886 26 C -0.070 4.070 27 C -0.136 4.136 28 C -0.142 4.142 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.093 0.907 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.035 0.965 39 H 0.078 0.922 40 H 0.002 0.998 41 H 0.260 0.740 42 H 0.059 0.941 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.096 0.904 48 H 0.074 0.926 49 H 0.055 0.945 50 H 0.070 0.930 51 H 0.033 0.967 52 H 0.045 0.955 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.190 5.462 14.563 22.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.095 4.095 3 H 0.106 0.894 4 C -0.167 4.167 5 C -0.021 4.021 6 N -0.312 5.312 7 C 0.305 3.695 8 O -0.426 6.426 9 C 0.293 3.707 10 O -0.436 6.436 11 N -0.313 5.313 12 C -0.005 4.005 13 C -0.147 4.147 14 C 0.027 3.973 15 C -0.567 4.567 16 H 0.075 0.925 17 C -0.184 4.184 18 N -0.555 5.555 19 Si 0.775 3.225 20 H -0.198 1.198 21 H -0.215 1.215 22 H -0.197 1.197 23 C -0.147 4.147 24 C -0.011 4.011 25 C -0.006 4.006 26 C -0.071 4.071 27 C -0.193 4.193 28 C -0.199 4.199 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.111 0.889 33 H 0.076 0.924 34 H 0.117 0.883 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.054 0.946 39 H 0.096 0.904 40 H 0.020 0.980 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.093 0.907 44 H 0.102 0.898 45 H 0.095 0.905 46 H 0.099 0.901 47 H 0.114 0.886 48 H 0.093 0.907 49 H 0.075 0.925 50 H 0.089 0.911 51 H 0.052 0.948 52 H 0.064 0.936 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.212 4.701 14.709 22.389 hybrid contribution 0.684 0.006 -1.173 1.357 sum -15.528 4.708 13.537 21.131 Atomic orbital electron populations 1.21903 0.93744 1.02009 1.02674 1.21140 0.96856 0.99345 0.92165 0.89444 1.22029 0.92834 1.01752 1.00071 1.22009 0.96296 1.00143 0.83671 1.48130 1.41025 1.32356 1.09686 1.20071 0.80382 0.80168 0.88854 1.90748 1.56202 1.63145 1.32530 1.20479 0.81621 0.83726 0.84899 1.90738 1.55126 1.31360 1.66373 1.48340 1.23061 1.40555 1.19343 1.21900 1.00253 0.97104 0.81195 1.21857 0.98478 0.95228 0.99090 1.18610 0.93166 0.93817 0.91707 1.21503 1.43394 0.93749 0.98055 0.92526 1.25675 0.95313 0.97470 0.99908 1.69960 1.46009 1.19759 1.19807 0.85755 0.78591 0.79928 0.78211 1.19787 1.21543 1.19684 1.21854 1.01292 0.96132 0.95464 1.21968 0.94207 0.89014 0.95896 1.21967 0.94356 0.99879 0.84442 1.20839 0.92932 0.96018 0.97273 1.21830 1.01964 1.00519 0.95020 1.21927 1.01815 0.95535 1.00596 0.92960 0.90956 0.92152 0.88899 0.92354 0.88309 0.92049 0.91534 0.90476 0.94635 0.90405 0.97986 0.93079 0.92205 0.90669 0.89772 0.90455 0.90129 0.88642 0.90731 0.92543 0.91107 0.94774 0.93584 0.90819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.49 71.98 0.61 -0.98 16 2 C -0.08 -1.03 2.00 -10.76 -0.02 -1.05 16 3 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 4 C -0.13 -2.30 5.02 30.67 0.15 -2.14 16 5 C 0.10 2.25 6.36 86.36 0.55 2.80 16 6 N -0.58 -14.51 2.42 -821.32 -1.99 -16.50 16 7 C 0.52 17.23 5.48 87.27 0.48 17.71 16 8 O -0.55 -20.41 16.51 -3.24 -0.05 -20.46 16 9 C 0.51 18.91 5.47 87.27 0.48 19.39 16 10 O -0.56 -23.58 16.53 -3.26 -0.05 -23.63 16 11 N -0.58 -20.99 2.97 -819.61 -2.43 -23.42 16 12 C 0.12 4.58 6.45 86.51 0.56 5.14 16 13 C -0.11 -4.78 5.17 30.82 0.16 -4.62 16 14 C 0.05 2.07 2.06 -11.51 -0.02 2.05 16 15 C -0.53 -26.88 8.56 25.60 0.22 -26.66 16 16 H 0.06 2.79 7.74 -2.91 -0.02 2.77 16 17 C 0.02 0.79 5.30 84.66 0.45 1.24 16 18 N -0.92 -50.29 11.30 21.45 0.24 -50.05 16 19 Si 0.95 41.48 29.54 68.60 2.03 43.51 16 20 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 21 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 23 C -0.11 -3.92 5.30 30.68 0.16 -3.76 16 24 C 0.11 3.62 6.35 86.37 0.55 4.17 16 25 C 0.11 2.21 5.06 86.22 0.44 2.65 16 26 C -0.07 -1.05 0.54 -52.25 -0.03 -1.08 16 27 C -0.14 -1.42 8.09 71.98 0.58 -0.84 16 28 C -0.14 -2.66 7.66 71.98 0.55 -2.11 16 29 H 0.05 0.64 6.47 -2.39 -0.02 0.63 16 30 H 0.07 0.62 6.40 -2.38 -0.02 0.60 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.06 1.25 6.34 -2.39 -0.02 1.23 16 34 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 35 H 0.06 1.71 6.31 -2.39 -0.02 1.70 16 36 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 37 H 0.08 3.05 7.03 -2.38 -0.02 3.03 16 38 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.08 3.94 6.03 -2.39 -0.01 3.93 16 40 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 41 H 0.26 13.79 8.31 -92.71 -0.77 13.02 16 42 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 44 H 0.08 2.48 6.29 -2.39 -0.02 2.47 16 45 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 46 H 0.08 1.83 7.04 -2.38 -0.02 1.81 16 47 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 48 H 0.07 0.65 6.40 -2.39 -0.02 0.63 16 49 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 51 H 0.03 0.82 5.98 -2.39 -0.01 0.81 16 52 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 53 H 0.07 1.14 6.47 -2.39 -0.02 1.12 16 Total: -1.00 -63.56 394.75 4.49 -59.07 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 0.89 Total: 19.59 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 5.86 Total: 11.90 kcal Atomic # 7 Polarization: -85.79 SS G_CDS: -4.18 Total: -89.97 kcal Atomic # 8 Polarization: -43.99 SS G_CDS: -0.11 Total: -44.10 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -63.56 4.49 -59.07 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261326947.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.330 kcal (2) G-P(sol) polarization free energy of solvation -63.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds