Wall clock time and date at job start Tue Mar 31 2020 20:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47592 * 2 1 4 4 C 1.53003 * 109.47189 * 120.00012 * 2 1 3 5 5 C 1.53003 * 109.47189 * 179.97438 * 4 2 1 6 6 H 1.09001 * 109.46866 * 179.97438 * 5 4 2 7 7 N 1.46497 * 109.47018 * 59.99571 * 5 4 2 8 8 C 1.34780 * 119.99732 * 85.00315 * 7 5 4 9 9 O 1.21352 * 120.00028 * 359.97438 * 8 7 5 10 10 C 1.49450 * 119.99882 * 180.02562 * 8 7 5 11 11 O 1.21352 * 120.00096 * 6.74260 * 10 8 7 12 12 N 1.34777 * 119.99821 * 186.74761 * 10 8 7 13 13 C 1.46918 * 120.63325 * 8.41858 * 12 10 8 14 14 C 1.53630 * 108.54322 * 126.37158 * 13 12 10 15 15 C 1.53041 * 109.24092 * 54.85970 * 14 13 12 16 16 C 1.53036 * 109.53714 * 298.51184 * 15 14 13 17 17 H 1.09003 * 109.49649 * 301.41819 * 16 15 14 18 18 C 1.50698 * 109.50117 * 181.31746 * 16 15 14 19 19 H 1.08001 * 119.99538 * 0.16385 * 18 16 15 20 20 C 1.37871 * 120.00571 * 180.15800 * 18 16 15 21 21 N 1.31515 * 119.99790 * 0.02562 * 20 18 16 22 22 Si 1.86792 * 120.00260 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47589 * 60.00241 * 22 20 18 24 24 H 1.48506 * 109.47294 * 180.02562 * 22 20 18 25 25 H 1.48508 * 109.47309 * 300.00045 * 22 20 18 26 26 C 1.46934 * 120.62743 * 188.70406 * 12 10 8 27 27 C 1.53003 * 109.46981 * 300.00033 * 5 4 2 28 28 C 1.52999 * 109.47374 * 59.99651 * 27 5 4 29 29 H 1.09005 * 109.46665 * 59.99908 * 28 27 5 30 30 C 1.52996 * 109.47104 * 179.97438 * 28 27 5 31 31 C 1.53000 * 109.46999 * 239.99499 * 2 1 3 32 32 H 1.09005 * 109.46932 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46763 * 299.99763 * 1 2 3 34 34 H 1.08992 * 109.46905 * 60.00025 * 1 2 3 35 35 H 1.08995 * 109.47073 * 299.99884 * 4 2 1 36 36 H 1.09005 * 109.47522 * 59.99947 * 4 2 1 37 37 H 0.96996 * 120.00530 * 265.00110 * 7 5 4 38 38 H 1.08996 * 109.59223 * 246.20841 * 13 12 10 39 39 H 1.09007 * 109.58899 * 6.63423 * 13 12 10 40 40 H 1.08996 * 109.63182 * 294.86743 * 14 13 12 41 41 H 1.09001 * 109.45504 * 174.74208 * 14 13 12 42 42 H 1.08995 * 109.45857 * 178.48819 * 15 14 13 43 43 H 1.08999 * 109.45030 * 58.52541 * 15 14 13 44 44 H 0.97003 * 120.00258 * 179.97438 * 21 20 18 45 45 H 1.08995 * 109.58739 * 353.36892 * 26 12 10 46 46 H 1.08999 * 109.58546 * 113.79778 * 26 12 10 47 47 H 1.09005 * 109.46923 * 299.99559 * 27 5 4 48 48 H 1.08997 * 109.47122 * 180.02562 * 27 5 4 49 49 H 1.09001 * 109.47299 * 180.02562 * 30 28 27 50 50 H 1.08997 * 109.47304 * 300.00413 * 30 28 27 51 51 H 1.09005 * 109.47387 * 60.00408 * 30 28 27 52 52 H 1.08995 * 109.47724 * 300.00245 * 31 2 1 53 53 H 1.09001 * 109.47113 * 60.00394 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 3.5701 -0.7218 1.2489 6 1 3.9334 -1.2353 2.1392 7 7 4.0589 0.6592 1.2485 8 6 4.1881 1.3286 2.4112 9 8 3.8991 0.7875 3.4582 10 6 4.6862 2.7377 2.4107 11 8 4.8578 3.3203 1.3601 12 7 4.9449 3.3613 3.5772 13 6 4.9204 2.6186 4.8447 14 6 6.2538 2.8493 5.5720 15 6 6.4887 4.3533 5.7297 16 6 6.5750 5.0055 4.3480 17 1 7.3855 4.5486 3.7800 18 6 6.8385 6.4811 4.5037 19 1 6.9375 6.9107 5.4896 20 6 6.9533 7.2825 3.3878 21 7 6.8324 6.7593 2.1872 22 14 7.2807 9.1113 3.5809 23 1 8.5646 9.3113 4.2997 24 1 7.3598 9.7444 2.2399 25 1 6.1772 9.7326 4.3567 26 6 5.2508 4.7981 3.6061 27 6 4.0795 -1.4435 -0.0003 28 6 3.5695 -0.7223 -1.2496 29 1 3.9332 0.3053 -1.2498 30 6 4.0795 -1.4436 -2.4988 31 6 2.0400 -0.7214 -1.2492 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8899 35 1 1.6768 -0.2074 2.1392 36 1 1.6767 -1.7490 1.2493 37 1 4.2895 1.0919 0.4116 38 1 4.0972 2.9773 5.4625 39 1 4.7919 1.5552 4.6427 40 1 7.0672 2.4128 4.9926 41 1 6.2162 2.3818 6.5559 42 1 7.4209 4.5206 6.2692 43 1 5.6622 4.7932 6.2879 44 1 6.9128 7.3232 1.4020 45 1 5.3404 5.1732 2.5867 46 1 4.4540 5.3309 4.1250 47 1 3.7158 -2.4710 0.0000 48 1 5.1695 -1.4443 -0.0004 49 1 3.7165 -0.9295 -3.3888 50 1 5.1694 -1.4436 -2.4988 51 1 3.7161 -2.4713 -2.4988 52 1 1.6767 -1.7490 -1.2492 53 1 1.6767 -0.2076 -2.1392 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261700440.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:45 Heat of formation + Delta-G solvation = -108.166231 kcal Electronic energy + Delta-G solvation = -30894.246284 eV Core-core repulsion = 26957.049637 eV Total energy + Delta-G solvation = -3937.196647 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.07982 -40.61553 -39.19510 -38.49844 -35.65360 -35.00632 -34.38192 -33.45729 -31.59036 -31.42576 -27.64579 -27.47980 -27.25151 -26.80630 -24.62711 -23.52239 -22.80235 -21.80093 -21.46373 -20.50518 -20.10475 -18.85370 -18.23141 -17.80871 -17.09257 -16.78049 -16.42623 -16.25265 -16.16250 -15.81702 -15.52473 -15.15715 -14.92845 -14.67349 -14.60551 -14.46818 -14.33322 -13.92704 -13.63393 -13.46353 -13.38135 -13.19258 -13.06098 -12.87583 -12.81827 -12.69676 -12.66364 -12.52046 -12.28944 -12.18005 -12.15346 -11.76668 -11.69372 -11.62944 -11.35379 -11.15949 -11.13091 -10.98583 -10.93203 -10.54519 -10.30598 -10.00701 -9.54654 -8.11473 -6.28726 0.38119 1.37693 1.42070 1.44860 1.51436 2.15558 2.41297 2.59932 3.16215 3.33583 3.67527 3.74392 3.75213 4.06641 4.11467 4.12000 4.16270 4.31948 4.37998 4.41638 4.49098 4.58179 4.64223 4.68841 4.73403 4.79913 4.80482 4.82528 4.84585 4.92414 4.95081 5.01072 5.03459 5.05890 5.12928 5.17347 5.22333 5.26866 5.27715 5.30107 5.36262 5.42255 5.42790 5.46661 5.53872 5.56811 5.60152 5.83949 5.93654 6.03895 6.29935 6.43917 6.75180 6.83597 7.00208 7.41115 8.91922 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015833 B = 0.002874 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.083412 B = 9741.363024 C =10470.990894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 H 0.045 0.955 4 C -0.119 4.119 5 C 0.139 3.861 6 H 0.090 0.910 7 N -0.681 5.681 8 C 0.520 3.480 9 O -0.523 6.523 10 C 0.482 3.518 11 O -0.559 6.559 12 N -0.576 5.576 13 C 0.071 3.929 14 C -0.125 4.125 15 C -0.107 4.107 16 C 0.040 3.960 17 H -0.011 1.011 18 C -0.538 4.538 19 H 0.063 0.937 20 C 0.011 3.989 21 N -0.913 5.913 22 Si 0.959 3.041 23 H -0.269 1.269 24 H -0.287 1.287 25 H -0.268 1.268 26 C 0.121 3.879 27 C -0.114 4.114 28 C -0.099 4.099 29 H 0.052 0.948 30 C -0.143 4.143 31 C -0.101 4.101 32 H 0.069 0.931 33 H 0.043 0.957 34 H 0.056 0.944 35 H 0.048 0.952 36 H 0.098 0.902 37 H 0.411 0.589 38 H 0.072 0.928 39 H 0.140 0.860 40 H 0.048 0.952 41 H 0.100 0.900 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.261 0.739 45 H 0.085 0.915 46 H 0.043 0.957 47 H 0.105 0.895 48 H 0.070 0.930 49 H 0.054 0.946 50 H 0.053 0.947 51 H 0.068 0.932 52 H 0.081 0.919 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.268 -20.961 -4.811 23.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 H 0.063 0.937 4 C -0.158 4.158 5 C 0.037 3.963 6 H 0.108 0.892 7 N -0.334 5.334 8 C 0.301 3.699 9 O -0.401 6.401 10 C 0.265 3.735 11 O -0.438 6.438 12 N -0.308 5.308 13 C -0.049 4.049 14 C -0.163 4.163 15 C -0.144 4.144 16 C 0.021 3.979 17 H 0.007 0.993 18 C -0.576 4.576 19 H 0.081 0.919 20 C -0.188 4.188 21 N -0.552 5.552 22 Si 0.784 3.216 23 H -0.194 1.194 24 H -0.213 1.213 25 H -0.193 1.193 26 C -0.001 4.001 27 C -0.152 4.152 28 C -0.117 4.117 29 H 0.070 0.930 30 C -0.200 4.200 31 C -0.138 4.138 32 H 0.088 0.912 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.116 0.884 37 H 0.249 0.751 38 H 0.090 0.910 39 H 0.156 0.844 40 H 0.067 0.933 41 H 0.119 0.881 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.103 0.897 46 H 0.062 0.938 47 H 0.124 0.876 48 H 0.089 0.911 49 H 0.074 0.926 50 H 0.072 0.928 51 H 0.087 0.913 52 H 0.100 0.900 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.385 -21.012 -4.810 23.927 hybrid contribution 0.514 1.973 -0.463 2.090 sum -9.871 -19.040 -5.273 22.085 Atomic orbital electron populations 1.21783 0.94467 1.02468 1.01347 1.21117 0.96174 0.98835 0.95315 0.93675 1.21956 0.93881 1.02377 0.97559 1.21349 0.94653 0.79709 1.00638 0.89163 1.46043 1.63827 1.15230 1.08309 1.19896 0.78849 0.86080 0.85089 1.90434 1.50205 1.69041 1.30450 1.20647 0.80044 0.88329 0.84480 1.90741 1.53208 1.68094 1.31784 1.48462 1.64336 1.10969 1.07033 1.23014 0.97964 1.00614 0.83358 1.21999 0.96596 0.96498 1.01214 1.21554 1.00854 0.94788 0.97249 1.18880 0.91669 0.94854 0.92468 0.99304 1.21461 1.49499 0.93733 0.92903 0.91929 1.25888 0.94712 1.03262 0.94984 1.70062 1.49945 1.37026 0.98159 0.85594 0.79057 0.79812 0.77104 1.19422 1.21288 1.19278 1.21945 0.97500 0.76716 1.03922 1.21893 1.01204 1.00418 0.91669 1.21159 0.96061 0.99156 0.95373 0.92973 1.21774 1.00957 1.00856 0.96403 1.21608 0.94190 1.01396 0.96647 0.91168 0.93791 0.92536 0.93364 0.88385 0.75082 0.91001 0.84368 0.93290 0.88142 0.92700 0.92440 0.92988 0.89688 0.93831 0.87646 0.91101 0.92648 0.92775 0.91263 0.90041 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.19 71.98 0.66 -1.54 16 2 C -0.10 -1.65 2.56 -10.79 -0.03 -1.68 16 3 H 0.04 1.03 7.60 -2.39 -0.02 1.01 16 4 C -0.12 -2.07 4.88 30.60 0.15 -1.92 16 5 C 0.14 2.61 2.78 44.99 0.13 2.73 16 6 H 0.09 1.78 7.58 -2.39 -0.02 1.76 16 7 N -0.68 -17.62 4.22 -443.85 -1.87 -19.49 16 8 C 0.52 17.17 7.71 87.27 0.67 17.84 16 9 O -0.52 -17.19 12.84 -3.25 -0.04 -17.23 16 10 C 0.48 20.36 7.73 87.27 0.67 21.03 16 11 O -0.56 -27.29 15.93 -3.25 -0.05 -27.34 16 12 N -0.58 -24.88 2.97 -819.63 -2.43 -27.31 16 13 C 0.07 2.49 6.01 86.51 0.52 3.01 16 14 C -0.13 -4.23 6.10 30.82 0.19 -4.04 16 15 C -0.11 -4.36 5.10 30.62 0.16 -4.20 16 16 C 0.04 2.09 2.25 -11.46 -0.03 2.07 16 17 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 18 C -0.54 -29.87 8.56 25.60 0.22 -29.65 16 19 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 20 C 0.01 0.63 5.30 84.65 0.45 1.08 16 21 N -0.91 -55.12 11.39 21.45 0.24 -54.88 16 22 Si 0.96 44.22 29.54 68.60 2.03 46.24 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 24 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 25 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 26 C 0.12 6.16 5.41 86.36 0.47 6.63 16 27 C -0.11 -1.54 4.89 30.59 0.15 -1.39 16 28 C -0.10 -1.41 2.55 -10.81 -0.03 -1.44 16 29 H 0.05 0.95 6.51 -2.38 -0.02 0.94 16 30 C -0.14 -1.68 9.19 71.98 0.66 -1.02 16 31 C -0.10 -1.35 4.48 30.58 0.14 -1.21 16 32 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 37 H 0.41 10.85 6.36 -92.71 -0.59 10.26 16 38 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.14 4.59 4.31 -48.37 -0.21 4.38 16 40 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 42 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 44 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 45 H 0.08 5.05 5.12 -2.39 -0.01 5.04 16 46 H 0.04 2.20 8.14 -2.39 -0.02 2.18 16 47 H 0.11 0.95 8.14 -2.38 -0.02 0.93 16 48 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 50 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 51 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 52 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 53 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -67.97 401.14 3.12 -64.85 By element: Atomic # 1 Polarization: 28.77 SS G_CDS: 0.10 Total: 28.86 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 5.15 Total: 6.30 kcal Atomic # 7 Polarization: -97.62 SS G_CDS: -4.06 Total: -101.69 kcal Atomic # 8 Polarization: -44.48 SS G_CDS: -0.09 Total: -44.57 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -67.97 3.12 -64.85 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261700440.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.312 kcal (2) G-P(sol) polarization free energy of solvation -67.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds