Wall clock time and date at job start Tue Mar 31 2020 20:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47163 * 2 1 4 4 C 1.52998 * 109.47146 * 120.00549 * 2 1 3 5 5 C 1.52996 * 109.47146 * 179.97438 * 4 2 1 6 6 N 1.46504 * 109.47140 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99843 * 205.00023 * 6 5 4 8 8 O 1.21349 * 120.00375 * 359.97438 * 7 6 5 9 9 C 1.49458 * 119.99764 * 180.02562 * 7 6 5 10 10 O 1.21346 * 120.00035 * 6.73509 * 9 7 6 11 11 N 1.34781 * 119.99674 * 186.74582 * 9 7 6 12 12 C 1.46921 * 120.62968 * 8.42195 * 11 9 7 13 13 C 1.53624 * 108.54367 * 126.37218 * 12 11 9 14 14 C 1.53043 * 109.24323 * 54.85036 * 13 12 11 15 15 C 1.53038 * 109.53884 * 298.51407 * 14 13 12 16 16 H 1.09000 * 109.52376 * 301.39896 * 15 14 13 17 17 C 1.50700 * 109.50066 * 181.31682 * 15 14 13 18 18 H 1.08003 * 119.99501 * 0.15919 * 17 15 14 19 19 C 1.37875 * 120.00203 * 180.16448 * 17 15 14 20 20 N 1.31515 * 119.99946 * 359.97438 * 19 17 15 21 21 Si 1.86802 * 120.00065 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46881 * 89.99914 * 21 19 17 23 23 H 1.48491 * 109.47193 * 209.99745 * 21 19 17 24 24 H 1.48498 * 109.46909 * 329.99991 * 21 19 17 25 25 C 1.46924 * 120.62592 * 188.70213 * 11 9 7 26 26 C 1.52998 * 109.47556 * 299.99787 * 5 4 2 27 27 C 1.53005 * 109.47034 * 59.99577 * 26 5 4 28 28 H 1.08999 * 109.47436 * 180.02562 * 27 26 5 29 29 C 1.53008 * 109.46701 * 60.00329 * 27 26 5 30 30 C 1.53001 * 109.46932 * 240.00191 * 2 1 3 31 31 H 1.08999 * 109.47018 * 299.99501 * 1 2 3 32 32 H 1.09000 * 109.47487 * 59.99787 * 1 2 3 33 33 H 1.09007 * 109.47312 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47538 * 59.99680 * 4 2 1 35 35 H 1.08999 * 109.47122 * 299.99887 * 4 2 1 36 36 H 1.08998 * 109.47414 * 59.99940 * 5 4 2 37 37 H 0.96998 * 119.99767 * 25.00649 * 6 5 4 38 38 H 1.09001 * 109.58072 * 246.19833 * 12 11 9 39 39 H 1.08993 * 109.59079 * 6.62350 * 12 11 9 40 40 H 1.09002 * 109.63244 * 294.86109 * 13 12 11 41 41 H 1.08993 * 109.46144 * 174.73742 * 13 12 11 42 42 H 1.08997 * 109.46185 * 178.49511 * 14 13 12 43 43 H 1.09001 * 109.44759 * 58.52511 * 14 13 12 44 44 H 0.97004 * 120.00037 * 180.02562 * 20 19 17 45 45 H 1.09000 * 109.58665 * 353.37283 * 25 11 9 46 46 H 1.08996 * 109.58863 * 113.65575 * 25 11 9 47 47 H 1.08994 * 109.47929 * 180.02562 * 26 5 4 48 48 H 1.09007 * 109.46993 * 300.00420 * 26 5 4 49 49 H 1.08999 * 109.47244 * 300.00201 * 29 27 26 50 50 H 1.08994 * 109.46735 * 60.00367 * 29 27 26 51 51 H 1.09001 * 109.46839 * 179.97438 * 29 27 26 52 52 H 1.08996 * 109.47476 * 299.99599 * 30 2 1 53 53 H 1.09004 * 109.47051 * 60.00496 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5699 -0.7219 1.2488 6 7 4.0583 -1.4121 2.4453 7 6 5.2805 -1.1265 2.9363 8 8 5.9766 -0.2979 2.3873 9 6 5.7789 -1.8310 4.1566 10 8 5.1384 -2.7445 4.6339 11 7 6.9396 -1.4515 4.7269 12 6 7.6326 -0.2366 4.2771 13 6 7.8919 0.6585 5.4984 14 6 8.6518 -0.1423 6.5584 15 6 7.8021 -1.3336 7.0065 16 1 6.8532 -0.9748 7.4053 17 6 8.5374 -2.1030 8.0735 18 1 9.5123 -1.7738 8.4015 19 6 7.9657 -3.2271 8.6307 20 7 6.7783 -3.6276 8.2314 21 14 8.8775 -4.1811 9.9527 22 1 8.5200 -3.6405 11.2888 23 1 8.4964 -5.6145 9.8806 24 1 10.3410 -4.0467 9.7397 25 6 7.5389 -2.2483 5.8061 26 6 4.0795 -1.4434 -0.0004 27 6 3.5694 -0.7222 -1.2497 28 1 3.9321 -1.2364 -2.1397 29 6 4.0800 0.7202 -1.2498 30 6 2.0399 -0.7212 -1.2493 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0277 -0.0005 34 1 1.6766 -1.7490 1.2492 35 1 1.6766 -0.2076 2.1392 36 1 3.9337 0.3056 1.2487 37 1 3.5020 -2.0747 2.8839 38 1 8.5802 -0.5078 3.8116 39 1 7.0090 0.2950 3.5584 40 1 6.9423 0.9990 5.9111 41 1 8.4875 1.5202 5.1971 42 1 8.8611 0.4973 7.4158 43 1 9.5899 -0.5034 6.1371 44 1 6.3759 -4.4183 8.6237 45 1 6.8534 -3.0443 6.0966 46 1 8.4777 -2.6821 5.4619 47 1 5.1694 -1.4443 -0.0005 48 1 3.7157 -2.4710 -0.0003 49 1 3.7170 1.2343 -0.3598 50 1 5.1699 0.7198 -1.2501 51 1 3.7170 1.2340 -2.1400 52 1 1.6767 -1.7489 -1.2493 53 1 1.6766 -0.2073 -2.1393 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261700443.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:33 Heat of formation + Delta-G solvation = -107.735162 kcal Electronic energy + Delta-G solvation = -30607.835836 eV Core-core repulsion = 26670.657882 eV Total energy + Delta-G solvation = -3937.177954 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.04259 -40.63931 -39.34539 -38.50629 -35.94520 -35.09198 -34.04801 -33.46208 -31.57754 -31.07302 -27.72422 -27.61113 -27.30109 -26.80313 -24.67924 -23.52935 -22.84656 -22.15737 -21.31821 -20.57850 -19.61573 -18.80096 -18.20759 -17.93797 -17.16688 -16.87457 -16.50747 -16.30184 -15.91179 -15.64248 -15.46819 -15.12660 -14.90658 -14.79264 -14.62278 -14.51189 -14.42426 -14.19576 -13.92269 -13.56511 -13.49152 -13.11826 -12.99294 -12.88427 -12.67331 -12.53463 -12.48796 -12.38807 -12.28754 -12.15842 -11.95771 -11.77843 -11.75841 -11.64116 -11.40117 -11.17028 -11.12002 -11.04805 -10.98071 -10.54441 -10.27329 -10.00601 -9.54828 -8.11613 -6.28599 0.36939 1.35022 1.42165 1.43074 1.52924 2.14528 2.41110 2.57422 3.16173 3.31485 3.63760 3.72465 3.91400 4.09295 4.11894 4.15371 4.16344 4.31748 4.33864 4.37979 4.40935 4.55017 4.58442 4.68950 4.74107 4.79407 4.80864 4.81228 4.85579 4.96486 5.01896 5.02960 5.05357 5.08351 5.15542 5.18264 5.22324 5.25234 5.28450 5.29611 5.35663 5.41669 5.46719 5.48857 5.53216 5.57199 5.62685 5.83960 5.93771 6.03392 6.30053 6.43798 6.74782 6.83723 6.99395 7.41228 8.92059 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.021531 B = 0.002530 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.152853 B =11064.248861 C =11742.198642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 H 0.076 0.924 4 C -0.119 4.119 5 C 0.141 3.859 6 N -0.686 5.686 7 C 0.521 3.479 8 O -0.522 6.522 9 C 0.483 3.517 10 O -0.558 6.558 11 N -0.577 5.577 12 C 0.071 3.929 13 C -0.125 4.125 14 C -0.107 4.107 15 C 0.039 3.961 16 H -0.011 1.011 17 C -0.536 4.536 18 H 0.063 0.937 19 C 0.011 3.989 20 N -0.914 5.914 21 Si 0.959 3.041 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.263 1.263 25 C 0.121 3.879 26 C -0.123 4.123 27 C -0.084 4.084 28 H 0.079 0.921 29 C -0.151 4.151 30 C -0.107 4.107 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.415 0.585 38 H 0.072 0.928 39 H 0.139 0.861 40 H 0.048 0.952 41 H 0.100 0.900 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.261 0.739 45 H 0.085 0.915 46 H 0.044 0.956 47 H 0.048 0.952 48 H 0.068 0.932 49 H 0.056 0.944 50 H 0.044 0.956 51 H 0.067 0.933 52 H 0.066 0.934 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.253 8.954 -21.270 25.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.105 4.105 3 H 0.095 0.905 4 C -0.157 4.157 5 C 0.038 3.962 6 N -0.338 5.338 7 C 0.302 3.698 8 O -0.400 6.400 9 C 0.266 3.734 10 O -0.437 6.437 11 N -0.308 5.308 12 C -0.049 4.049 13 C -0.163 4.163 14 C -0.144 4.144 15 C 0.020 3.980 16 H 0.007 0.993 17 C -0.574 4.574 18 H 0.081 0.919 19 C -0.189 4.189 20 N -0.552 5.552 21 Si 0.784 3.216 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.188 1.188 25 C -0.001 4.001 26 C -0.162 4.162 27 C -0.103 4.103 28 H 0.097 0.903 29 C -0.208 4.208 30 C -0.144 4.144 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.252 0.748 38 H 0.090 0.910 39 H 0.156 0.844 40 H 0.067 0.933 41 H 0.118 0.882 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.103 0.897 46 H 0.063 0.937 47 H 0.067 0.933 48 H 0.087 0.913 49 H 0.075 0.925 50 H 0.063 0.937 51 H 0.086 0.914 52 H 0.085 0.915 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.222 8.932 -21.382 25.326 hybrid contribution 0.332 -1.302 1.496 2.010 sum -9.890 7.630 -19.886 23.484 Atomic orbital electron populations 1.21800 0.94037 1.02199 1.02185 1.21097 0.96193 0.99771 0.93416 0.90540 1.21892 0.91657 1.02546 0.99602 1.21346 0.95361 0.96861 0.82606 1.45981 1.15770 1.42568 1.29437 1.19914 0.83092 0.82401 0.84421 1.90440 1.55659 1.33736 1.60162 1.20606 0.82413 0.84788 0.85584 1.90742 1.56511 1.32209 1.64247 1.48461 1.21257 1.26128 1.34955 1.23006 0.99201 0.84708 0.98010 1.21999 1.00458 0.98453 0.95413 1.21552 0.98371 0.96659 0.97842 1.18894 0.94373 0.92712 0.92003 0.99254 1.21485 1.04159 1.10964 1.20808 0.91925 1.25889 0.95579 0.98461 0.98954 1.70067 1.16560 1.25186 1.43407 0.85540 0.79232 0.77520 0.79287 1.20139 1.21172 1.18762 1.21947 0.96676 0.95827 0.85653 1.21942 1.00179 0.99803 0.94274 1.21045 0.96197 0.96319 0.96702 0.90289 1.21938 1.00569 0.96039 1.02259 1.21642 0.93818 1.01110 0.97850 0.92711 0.91674 0.92444 0.90471 0.91135 0.89517 0.74844 0.90964 0.84430 0.93294 0.88167 0.92692 0.92429 0.92980 0.89669 0.93746 0.93319 0.91313 0.92482 0.93691 0.91417 0.91486 0.90453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.19 71.98 0.66 -0.75 16 2 C -0.09 -0.99 2.45 -10.80 -0.03 -1.01 16 3 H 0.08 0.91 6.43 -2.39 -0.02 0.89 16 4 C -0.12 -1.75 4.67 30.59 0.14 -1.61 16 5 C 0.14 2.78 2.18 44.99 0.10 2.88 16 6 N -0.69 -17.68 5.07 -443.86 -2.25 -19.93 16 7 C 0.52 17.15 7.71 87.27 0.67 17.82 16 8 O -0.52 -17.23 12.84 -3.24 -0.04 -17.28 16 9 C 0.48 20.25 7.73 87.27 0.67 20.93 16 10 O -0.56 -26.98 15.93 -3.24 -0.05 -27.03 16 11 N -0.58 -24.75 2.97 -819.65 -2.43 -27.18 16 12 C 0.07 2.49 6.01 86.51 0.52 3.01 16 13 C -0.13 -4.23 6.10 30.82 0.19 -4.04 16 14 C -0.11 -4.34 5.10 30.62 0.16 -4.18 16 15 C 0.04 2.03 2.25 -11.46 -0.03 2.00 16 16 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 17 C -0.54 -29.68 8.56 25.60 0.22 -29.46 16 18 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 19 C 0.01 0.60 5.30 84.65 0.45 1.05 16 20 N -0.91 -54.97 11.39 21.45 0.24 -54.73 16 21 Si 0.96 44.14 29.54 68.60 2.03 46.17 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 23 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 24 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 25 C 0.12 6.12 5.41 86.36 0.47 6.59 16 26 C -0.12 -2.28 5.02 30.60 0.15 -2.12 16 27 C -0.08 -1.14 3.19 -10.81 -0.03 -1.18 16 28 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 29 C -0.15 -2.13 8.50 71.98 0.61 -1.52 16 30 C -0.11 -1.14 4.73 30.58 0.14 -1.00 16 31 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.09 1.89 5.86 -2.39 -0.01 1.88 16 37 H 0.41 10.35 8.09 -92.71 -0.75 9.60 16 38 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.14 4.56 4.30 -48.40 -0.21 4.35 16 40 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.10 2.63 8.14 -2.39 -0.02 2.62 16 42 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 44 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 45 H 0.09 5.04 5.12 -2.39 -0.01 5.02 16 46 H 0.04 2.23 8.14 -2.39 -0.02 2.21 16 47 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 49 H 0.06 0.85 4.81 -2.39 -0.01 0.84 16 50 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 51 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 52 H 0.07 0.70 8.14 -2.39 -0.02 0.69 16 53 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -67.44 398.54 2.52 -64.92 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: -0.05 Total: 27.64 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 5.07 Total: 7.42 kcal Atomic # 7 Polarization: -97.41 SS G_CDS: -4.44 Total: -101.84 kcal Atomic # 8 Polarization: -44.21 SS G_CDS: -0.09 Total: -44.31 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -67.44 2.52 -64.92 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261700443.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.811 kcal (2) G-P(sol) polarization free energy of solvation -67.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds