Wall clock time and date at job start Tue Mar 31 2020 19:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 110.40561 * 2 1 4 4 C 1.55020 * 110.35672 * 122.26189 * 2 1 3 5 5 C 1.54538 * 101.53077 * 155.24564 * 4 2 1 6 6 C 1.53684 * 103.64067 * 325.16307 * 5 4 2 7 7 N 1.47177 * 107.11274 * 21.55560 * 6 5 4 8 8 C 1.34781 * 125.66335 * 181.46007 * 7 6 5 9 9 O 1.21284 * 119.99828 * 180.02562 * 8 7 6 10 10 C 1.50696 * 119.99851 * 0.04377 * 8 7 6 11 11 O 1.42901 * 109.47246 * 179.97438 * 10 8 7 12 12 C 1.42895 * 114.00354 * 180.02562 * 11 10 8 13 13 C 1.52997 * 109.47202 * 180.02562 * 12 11 10 14 14 C 1.52999 * 117.49834 * 243.74611 * 13 12 11 15 15 C 1.52999 * 117.49734 * 175.08684 * 13 12 11 16 16 C 1.52274 * 110.16724 * 206.72262 * 5 4 2 17 17 C 1.53317 * 109.41512 * 297.15747 * 16 5 4 18 18 N 1.46932 * 108.70355 * 306.48658 * 17 16 5 19 19 C 1.36941 * 120.56204 * 234.26095 * 18 17 16 20 20 H 1.08003 * 119.99888 * 27.91004 * 19 18 17 21 21 C 1.38817 * 119.99834 * 207.91249 * 19 18 17 22 22 N 1.31615 * 119.99978 * 17.46154 * 21 19 18 23 23 Si 1.86791 * 119.99675 * 197.46188 * 21 19 18 24 24 H 1.48503 * 109.47588 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.46999 * 119.99926 * 23 21 19 26 26 H 1.48502 * 109.47422 * 239.99900 * 23 21 19 27 27 C 1.46931 * 118.87273 * 54.23854 * 18 17 16 28 28 C 1.52263 * 110.16169 * 83.58814 * 5 4 2 29 29 H 1.09001 * 109.46871 * 297.73804 * 1 2 3 30 30 H 1.08998 * 109.47248 * 57.74025 * 1 2 3 31 31 H 1.08999 * 109.47190 * 177.74340 * 1 2 3 32 32 H 1.08998 * 111.01667 * 37.18188 * 4 2 1 33 33 H 1.08997 * 111.01677 * 273.30377 * 4 2 1 34 34 H 1.08997 * 109.90783 * 140.92996 * 6 5 4 35 35 H 1.09000 * 109.90647 * 262.18755 * 6 5 4 36 36 H 1.08989 * 109.47293 * 299.99947 * 10 8 7 37 37 H 1.09003 * 109.46645 * 60.00134 * 10 8 7 38 38 H 1.09001 * 109.47223 * 300.00334 * 12 11 10 39 39 H 1.08998 * 109.46923 * 60.00021 * 12 11 10 40 40 H 1.08995 * 115.54987 * 29.42289 * 13 12 11 41 41 H 1.08995 * 117.50374 * 0.02562 * 14 13 12 42 42 H 1.09007 * 117.49548 * 145.02432 * 14 13 12 43 43 H 1.09004 * 117.50222 * 214.98060 * 15 13 12 44 44 H 1.09005 * 117.49971 * 0.02562 * 15 13 12 45 45 H 1.09002 * 109.48271 * 57.13359 * 16 5 4 46 46 H 1.08996 * 109.47987 * 177.16944 * 16 5 4 47 47 H 1.09000 * 109.59724 * 186.72200 * 17 16 5 48 48 H 1.08995 * 109.73263 * 66.33185 * 17 16 5 49 49 H 0.96996 * 120.00238 * 179.97438 * 22 21 19 50 50 H 1.08998 * 109.59672 * 185.99023 * 27 18 17 51 51 H 1.09002 * 109.72537 * 65.60049 * 27 18 17 52 52 H 1.09007 * 109.48451 * 182.82047 * 28 5 4 53 53 H 1.09004 * 109.48649 * 302.84868 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9100 1.0216 0.0000 4 6 2.0692 -0.7758 1.2290 5 6 3.4658 -1.2112 0.7310 6 6 3.2493 -1.4792 -0.7667 7 7 2.0430 -0.7382 -1.1693 8 6 1.4981 -0.7342 -2.4020 9 8 0.4983 -0.0834 -2.6209 10 6 2.1308 -1.5386 -3.5081 11 8 1.3749 -1.3735 -4.7095 12 6 1.8926 -2.0992 -5.8263 13 6 1.0098 -1.8491 -7.0506 14 6 0.2657 -3.0481 -7.6419 15 6 1.4635 -2.4488 -8.3831 16 6 3.9058 -2.4814 1.4464 17 6 4.0376 -2.2010 2.9479 18 7 4.9207 -1.0418 3.1351 19 6 6.0188 -1.1271 3.9488 20 1 6.5087 -2.0783 4.0967 21 6 6.5023 0.0088 4.5836 22 7 5.7400 1.0761 4.6933 23 14 8.2346 0.0224 5.2821 24 1 8.8802 -1.2912 5.0307 25 1 9.0242 1.0959 4.6267 26 1 8.1768 0.2730 6.7446 27 6 4.6059 0.2105 2.4340 28 6 4.4705 -0.0856 0.9358 29 1 -0.3633 0.4783 0.9096 30 1 -0.3633 0.5485 -0.8690 31 1 -0.3633 -1.0268 -0.0405 32 1 1.4452 -1.6419 1.4491 33 1 2.1502 -0.1234 2.0984 34 1 4.1093 -1.1253 -1.3352 35 1 3.1031 -2.5461 -0.9356 36 1 3.1517 -1.1931 -3.6704 37 1 2.1437 -2.5923 -3.2293 38 1 2.9086 -1.7655 -6.0372 39 1 1.9006 -3.1644 -5.5953 40 1 0.5084 -0.8817 -7.0789 41 1 0.4047 -4.0151 -7.1585 42 1 -0.7252 -2.8694 -8.0595 43 1 1.2601 -1.8762 -9.2880 44 1 2.3907 -3.0220 -8.3874 45 1 3.1643 -3.2641 1.2865 46 1 4.8684 -2.8062 1.0513 47 1 4.4656 -3.0709 3.4461 48 1 3.0560 -1.9847 3.3694 49 1 6.0777 1.8697 5.1372 50 1 5.4085 0.9305 2.5934 51 1 3.6684 0.6183 2.8123 52 1 5.4391 -0.3854 0.5356 53 1 4.1246 0.8092 0.4181 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263935252.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:20 Heat of formation + Delta-G solvation = -48.411970 kcal Electronic energy + Delta-G solvation = -30193.000162 eV Core-core repulsion = 26258.394655 eV Total energy + Delta-G solvation = -3934.605508 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.76131 -40.06237 -39.07161 -37.56901 -37.14782 -34.78192 -33.17755 -32.57126 -31.57262 -29.69077 -28.61059 -27.19274 -27.04276 -25.66594 -24.02474 -23.25800 -22.93820 -22.50500 -21.70376 -20.04425 -19.64638 -18.49149 -18.13345 -17.54074 -17.39298 -17.17833 -16.80079 -16.27551 -15.89335 -15.65468 -15.42511 -15.12264 -15.06732 -14.99312 -14.68168 -14.34985 -14.25975 -13.97951 -13.56578 -13.43465 -13.32696 -13.15118 -13.07049 -12.96163 -12.83050 -12.56991 -12.38779 -12.30303 -12.20453 -12.10074 -12.05078 -11.77999 -11.74014 -11.43747 -11.36062 -11.26934 -11.06415 -10.95863 -10.55583 -10.51283 -10.47318 -9.66299 -8.61085 -7.83816 -5.27543 1.46628 1.49512 1.56148 1.58896 1.64791 2.53701 2.67610 2.98708 3.29423 3.42086 3.53092 3.74561 3.82286 3.84653 3.92621 3.96590 4.13267 4.13977 4.16475 4.24080 4.25531 4.29451 4.34382 4.49004 4.51941 4.58203 4.60304 4.69910 4.71838 4.75657 4.78061 4.79083 4.82512 4.93846 4.99130 5.01401 5.08205 5.13688 5.19883 5.23474 5.24763 5.30037 5.33990 5.38849 5.45613 5.50339 5.59167 5.70326 5.85492 6.09871 6.43642 6.52865 7.14653 7.19867 7.93105 8.43041 9.21920 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.021117 B = 0.002246 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.651244 B =12464.594316 C =13071.523672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.136 3.864 3 H 0.063 0.937 4 C -0.112 4.112 5 C -0.052 4.052 6 C 0.110 3.890 7 N -0.609 5.609 8 C 0.523 3.477 9 O -0.567 6.567 10 C 0.052 3.948 11 O -0.395 6.395 12 C 0.090 3.910 13 C -0.177 4.177 14 C -0.180 4.180 15 C -0.158 4.158 16 C -0.104 4.104 17 C 0.140 3.860 18 N -0.608 5.608 19 C -0.255 4.255 20 H 0.067 0.933 21 C -0.053 4.053 22 N -0.935 5.935 23 Si 0.961 3.039 24 H -0.265 1.265 25 H -0.293 1.293 26 H -0.296 1.296 27 C 0.179 3.821 28 C -0.113 4.113 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.105 0.895 44 H 0.110 0.890 45 H 0.086 0.914 46 H 0.066 0.934 47 H 0.051 0.949 48 H 0.015 0.985 49 H 0.247 0.753 50 H 0.047 0.953 51 H 0.000 1.000 52 H 0.058 0.942 53 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.654 -10.344 -21.490 24.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.034 3.966 3 H 0.081 0.919 4 C -0.150 4.150 5 C -0.053 4.053 6 C -0.012 4.012 7 N -0.344 5.344 8 C 0.312 3.688 9 O -0.446 6.446 10 C -0.027 4.027 11 O -0.314 6.314 12 C 0.014 3.986 13 C -0.195 4.195 14 C -0.216 4.216 15 C -0.195 4.195 16 C -0.143 4.143 17 C 0.015 3.985 18 N -0.331 5.331 19 C -0.385 4.385 20 H 0.085 0.915 21 C -0.248 4.248 22 N -0.582 5.582 23 Si 0.790 3.210 24 H -0.190 1.190 25 H -0.220 1.220 26 H -0.224 1.224 27 C 0.053 3.947 28 C -0.152 4.152 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.113 0.887 41 H 0.122 0.878 42 H 0.115 0.885 43 H 0.123 0.877 44 H 0.128 0.872 45 H 0.105 0.895 46 H 0.084 0.916 47 H 0.070 0.930 48 H 0.033 0.967 49 H 0.057 0.943 50 H 0.065 0.935 51 H 0.018 0.982 52 H 0.076 0.924 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.335 -9.777 -21.633 24.847 hybrid contribution 0.993 0.694 1.043 1.598 sum -6.343 -9.082 -20.590 23.381 Atomic orbital electron populations 1.22010 0.93985 1.02298 1.02595 1.21906 0.94884 0.95281 0.84555 0.91886 1.22849 0.95608 1.00362 0.96148 1.20852 0.94611 0.96315 0.93527 1.22312 0.86618 0.97474 0.94802 1.48635 1.28808 1.48399 1.08546 1.20460 0.83820 0.81924 0.82569 1.90658 1.26960 1.44870 1.82121 1.22257 0.95702 1.00667 0.84034 1.87957 1.53460 1.71533 1.18453 1.22234 0.96601 0.95772 0.83997 1.22134 1.04308 0.99038 0.94020 1.23179 0.97329 0.97205 1.03929 1.23088 0.99334 1.03007 0.94091 1.21773 1.01632 0.95474 0.95457 1.21080 0.92637 0.89804 0.94953 1.44302 1.27745 1.09438 1.51663 1.19541 1.03670 0.95105 1.20189 0.91544 1.25737 1.01897 0.97696 0.99504 1.70183 1.35943 1.04826 1.47201 0.85297 0.80908 0.77717 0.77076 1.18958 1.21964 1.22358 1.20586 0.97258 0.88222 0.88606 1.21883 0.98269 0.97347 0.97707 0.91116 0.92050 0.92707 0.89711 0.91140 0.89818 0.88426 0.88005 0.87574 0.91332 0.91361 0.88661 0.87846 0.88508 0.87673 0.87188 0.89545 0.91572 0.93010 0.96686 0.94349 0.93463 0.98179 0.92354 0.92604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.11 8.60 71.98 0.62 -3.49 16 2 C 0.14 3.73 3.44 45.49 0.16 3.89 16 3 H 0.06 1.89 7.74 -2.39 -0.02 1.87 16 4 C -0.11 -3.06 4.35 31.81 0.14 -2.93 16 5 C -0.05 -1.39 0.55 -51.91 -0.03 -1.42 16 6 C 0.11 2.22 5.67 86.48 0.49 2.71 16 7 N -0.61 -14.97 3.25 -788.66 -2.56 -17.53 16 8 C 0.52 14.08 7.71 87.66 0.68 14.76 16 9 O -0.57 -20.25 14.23 15.99 0.23 -20.03 16 10 C 0.05 0.99 5.61 71.23 0.40 1.39 16 11 O -0.39 -9.26 9.88 -129.94 -1.28 -10.54 16 12 C 0.09 1.39 6.22 71.98 0.45 1.84 16 13 C -0.18 -2.78 6.05 -10.79 -0.07 -2.85 16 14 C -0.18 -2.23 10.18 30.62 0.31 -1.92 16 15 C -0.16 -1.66 10.25 30.62 0.31 -1.35 16 16 C -0.10 -2.81 4.72 30.46 0.14 -2.66 16 17 C 0.14 5.21 6.22 86.40 0.54 5.75 16 18 N -0.61 -28.54 2.98 -698.58 -2.08 -30.62 16 19 C -0.25 -13.45 9.58 84.03 0.80 -12.64 16 20 H 0.07 3.42 7.89 -2.91 -0.02 3.40 16 21 C -0.05 -2.91 4.90 84.86 0.42 -2.49 16 22 N -0.93 -54.51 11.20 21.65 0.24 -54.26 16 23 Si 0.96 44.09 29.59 68.60 2.03 46.12 16 24 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 25 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 26 H -0.30 -13.74 7.11 99.48 0.71 -13.04 16 27 C 0.18 8.11 4.99 86.40 0.43 8.54 16 28 C -0.11 -3.80 4.74 30.46 0.14 -3.65 16 29 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.06 1.93 6.09 -2.39 -0.01 1.92 16 31 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.08 2.12 7.92 -2.39 -0.02 2.10 16 33 H 0.07 2.32 6.08 -2.39 -0.01 2.30 16 34 H 0.08 1.50 7.83 -2.39 -0.02 1.49 16 35 H 0.10 1.46 7.78 -2.39 -0.02 1.44 16 36 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.07 0.81 7.88 -2.39 -0.02 0.79 16 40 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.10 1.10 8.03 -2.39 -0.02 1.08 16 42 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 43 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 44 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 45 H 0.09 1.81 8.11 -2.39 -0.02 1.79 16 46 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.05 1.91 7.93 -2.39 -0.02 1.89 16 48 H 0.02 0.57 7.57 -2.39 -0.02 0.56 16 49 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 50 H 0.05 2.51 6.02 -2.39 -0.01 2.50 16 51 H 0.00 0.01 6.48 -2.39 -0.02 0.00 16 52 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 53 H 0.06 1.80 7.47 -2.38 -0.02 1.78 16 Total: -1.00 -70.02 404.90 3.38 -66.65 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 0.87 Total: 16.77 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 5.94 Total: 3.45 kcal Atomic # 7 Polarization: -98.01 SS G_CDS: -4.40 Total: -102.42 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -1.06 Total: -30.57 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -70.02 3.38 -66.65 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263935252.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.235 kcal (2) G-P(sol) polarization free energy of solvation -70.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds