Wall clock time and date at job start Tue Mar 31 2020 19:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.99108 * 2 1 4 4 C 1.54457 * 109.88276 * 238.91442 * 2 1 3 5 5 C 1.54385 * 102.87407 * 219.07308 * 4 2 1 6 6 C 1.54120 * 102.47844 * 34.64387 * 5 4 2 7 7 N 1.47084 * 109.87739 * 121.07847 * 2 1 3 8 8 C 1.34770 * 125.62905 * 298.41892 * 7 2 1 9 9 O 1.21281 * 120.00047 * 359.97438 * 8 7 2 10 10 C 1.50703 * 120.00021 * 179.97438 * 8 7 2 11 11 O 1.42899 * 109.47097 * 179.97438 * 10 8 7 12 12 C 1.42903 * 113.99812 * 179.97438 * 11 10 8 13 13 C 1.53011 * 109.46885 * 180.02562 * 12 11 10 14 14 C 1.52999 * 117.49749 * 243.62013 * 13 12 11 15 15 C 1.53002 * 117.49491 * 174.99815 * 13 12 11 16 16 C 1.52114 * 110.50568 * 152.62888 * 5 4 2 17 17 C 1.53339 * 109.44386 * 64.09320 * 16 5 4 18 18 N 1.46931 * 108.68543 * 53.29940 * 17 16 5 19 19 C 1.36940 * 120.54807 * 125.63278 * 18 17 16 20 20 H 1.08004 * 120.00017 * 331.82734 * 19 18 17 21 21 C 1.38813 * 119.99810 * 151.82016 * 19 18 17 22 22 N 1.31616 * 119.99949 * 335.54864 * 21 19 18 23 23 Si 1.86802 * 119.99755 * 155.54079 * 21 19 18 24 24 H 1.48505 * 109.47054 * 179.97438 * 23 21 19 25 25 H 1.48492 * 109.47372 * 300.00576 * 23 21 19 26 26 H 1.48509 * 109.46823 * 60.00803 * 23 21 19 27 27 C 1.46930 * 118.90329 * 305.91144 * 18 17 16 28 28 C 1.52108 * 110.51769 * 276.65537 * 5 4 2 29 29 H 1.09000 * 109.47256 * 181.08260 * 1 2 3 30 30 H 1.08994 * 109.47374 * 301.08719 * 1 2 3 31 31 H 1.09000 * 109.46477 * 61.08397 * 1 2 3 32 32 H 1.09010 * 110.73312 * 100.72691 * 4 2 1 33 33 H 1.09005 * 110.73086 * 337.42204 * 4 2 1 34 34 H 1.08993 * 110.38019 * 82.74473 * 6 5 4 35 35 H 1.09004 * 110.37639 * 205.09632 * 6 5 4 36 36 H 1.08994 * 109.47253 * 300.00028 * 10 8 7 37 37 H 1.09001 * 109.46901 * 60.00223 * 10 8 7 38 38 H 1.08998 * 109.47352 * 299.99918 * 12 11 10 39 39 H 1.08994 * 109.47137 * 60.00640 * 12 11 10 40 40 H 1.08996 * 115.54619 * 29.32993 * 13 12 11 41 41 H 1.08997 * 117.49796 * 0.02562 * 14 13 12 42 42 H 1.09000 * 117.49664 * 145.01965 * 14 13 12 43 43 H 1.08998 * 117.49621 * 214.97628 * 15 13 12 44 44 H 1.08997 * 117.50072 * 0.02562 * 15 13 12 45 45 H 1.09008 * 109.47251 * 304.10461 * 16 5 4 46 46 H 1.08999 * 109.48209 * 184.09112 * 16 5 4 47 47 H 1.08995 * 109.60229 * 293.54288 * 17 16 5 48 48 H 1.08994 * 109.73469 * 173.14067 * 17 16 5 49 49 H 0.96993 * 120.00586 * 354.24394 * 22 21 19 50 50 H 1.08995 * 109.59904 * 173.84448 * 27 18 17 51 51 H 1.08998 * 109.59868 * 294.32792 * 27 18 17 52 52 H 1.08998 * 109.47471 * 55.90018 * 28 5 4 53 53 H 1.09000 * 109.47439 * 175.91455 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 6 2.0553 -0.7500 -1.2439 5 6 3.2710 -1.5242 -0.6908 6 6 2.8171 -1.8799 0.7384 7 7 2.0301 -0.7140 1.1847 8 6 1.8067 -0.3615 2.4661 9 8 1.1425 0.6216 2.7177 10 6 2.3823 -1.1889 3.5865 11 8 2.0099 -0.6161 4.8416 12 6 2.5071 -1.3287 5.9761 13 6 2.0489 -0.6302 7.2580 14 6 3.1299 -0.0415 8.1667 15 6 2.3816 -1.3074 8.5891 16 6 3.5161 -2.7846 -1.5065 17 6 3.8908 -2.3986 -2.9424 18 7 5.0135 -1.4518 -2.8975 19 6 6.1634 -1.7020 -3.5978 20 1 6.4600 -2.7200 -3.8031 21 6 6.9477 -0.6471 -4.0441 22 7 6.4081 0.5374 -4.2393 23 14 8.7688 -0.9088 -4.3672 24 1 9.3766 0.3634 -4.8333 25 1 9.4358 -1.3472 -3.1151 26 1 8.9415 -1.9509 -5.4112 27 6 4.8844 -0.2352 -2.0839 28 6 4.5017 -0.6309 -0.6573 29 1 -0.3634 -1.0275 0.0194 30 1 -0.3634 0.5306 0.8800 31 1 -0.3632 0.4969 -0.8996 32 1 2.3650 -0.0462 -2.0166 33 1 1.3013 -1.4378 -1.6267 34 1 2.1959 -2.7755 0.7276 35 1 3.6818 -2.0246 1.3863 36 1 1.9965 -2.2062 3.5222 37 1 3.4691 -1.2066 3.5038 38 1 2.1230 -2.3487 5.9614 39 1 3.5963 -1.3500 5.9430 40 1 1.1024 -0.0942 7.1887 41 1 4.1674 -0.1514 7.8511 42 1 2.8947 0.8823 8.6954 43 1 1.6541 -1.2165 9.3956 44 1 2.9271 -2.2503 8.5515 45 1 2.6108 -3.3918 -1.5179 46 1 4.3303 -3.3546 -1.0591 47 1 3.0362 -1.9294 -3.4298 48 1 4.1852 -3.2889 -3.4979 49 1 5.4492 0.6539 -4.1524 50 1 5.8346 0.2988 -2.0712 51 1 4.1082 0.4047 -2.5036 52 1 4.2845 0.2652 -0.0761 53 1 5.3299 -1.1703 -0.1978 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263935253.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:24 Heat of formation + Delta-G solvation = -54.562153 kcal Electronic energy + Delta-G solvation = -30348.278129 eV Core-core repulsion = 26413.405930 eV Total energy + Delta-G solvation = -3934.872200 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.84729 -40.14275 -39.11483 -37.76927 -37.23806 -34.99575 -33.18844 -32.52002 -31.71542 -29.72865 -28.54194 -27.23475 -27.09465 -25.70669 -24.10144 -23.27538 -22.95288 -22.57279 -21.71851 -20.15345 -19.81834 -18.97656 -18.37043 -17.63511 -17.46788 -17.00682 -16.53677 -16.27112 -16.01507 -15.57195 -15.54148 -15.33583 -15.25904 -14.96448 -14.91708 -14.42626 -14.18791 -14.17916 -13.68803 -13.51171 -13.40728 -13.36439 -13.21744 -12.91196 -12.70396 -12.46841 -12.40779 -12.21520 -12.13305 -12.09232 -11.96763 -11.90015 -11.68174 -11.43694 -11.39169 -11.29844 -11.21233 -11.04865 -10.77689 -10.54247 -10.42744 -9.72787 -8.86846 -8.20116 -5.36503 1.50828 1.58718 1.60369 1.65757 1.84169 2.64288 2.67756 2.96298 3.23397 3.35769 3.43020 3.59686 3.74594 3.77507 3.89486 3.94075 4.07878 4.10489 4.13568 4.15303 4.19933 4.22134 4.32424 4.39401 4.41208 4.49202 4.50498 4.58315 4.65408 4.67183 4.71734 4.76225 4.76610 4.82096 4.87336 4.95806 4.99584 5.04056 5.12612 5.18058 5.20419 5.22682 5.23247 5.25294 5.28870 5.35922 5.37466 5.58038 5.88521 6.06668 6.42724 6.46216 7.08485 7.11322 7.82620 8.27485 9.03965 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014361 B = 0.002528 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.274176 B =11074.364606 C =12159.158764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.137 3.863 3 H 0.049 0.951 4 C -0.110 4.110 5 C -0.054 4.054 6 C 0.110 3.890 7 N -0.607 5.607 8 C 0.523 3.477 9 O -0.573 6.573 10 C 0.053 3.947 11 O -0.395 6.395 12 C 0.089 3.911 13 C -0.176 4.176 14 C -0.184 4.184 15 C -0.155 4.155 16 C -0.103 4.103 17 C 0.142 3.858 18 N -0.615 5.615 19 C -0.349 4.349 20 H 0.052 0.948 21 C -0.079 4.079 22 N -0.946 5.946 23 Si 1.111 2.889 24 H -0.296 1.296 25 H -0.280 1.280 26 H -0.275 1.275 27 C 0.161 3.839 28 C -0.106 4.106 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.111 0.889 37 H 0.099 0.901 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.107 0.893 44 H 0.110 0.890 45 H 0.094 0.906 46 H 0.064 0.936 47 H 0.018 0.982 48 H 0.049 0.951 49 H 0.253 0.747 50 H 0.035 0.965 51 H 0.004 0.996 52 H 0.051 0.949 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.679 -10.042 20.207 24.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.034 3.966 3 H 0.067 0.933 4 C -0.148 4.148 5 C -0.055 4.055 6 C -0.012 4.012 7 N -0.342 5.342 8 C 0.312 3.688 9 O -0.452 6.452 10 C -0.026 4.026 11 O -0.315 6.315 12 C 0.014 3.986 13 C -0.194 4.194 14 C -0.221 4.221 15 C -0.192 4.192 16 C -0.142 4.142 17 C 0.017 3.983 18 N -0.340 5.340 19 C -0.479 4.479 20 H 0.070 0.930 21 C -0.276 4.276 22 N -0.588 5.588 23 Si 0.936 3.064 24 H -0.223 1.223 25 H -0.206 1.206 26 H -0.201 1.201 27 C 0.035 3.965 28 C -0.145 4.145 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.111 0.889 36 H 0.129 0.871 37 H 0.117 0.883 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.115 0.885 41 H 0.119 0.881 42 H 0.115 0.885 43 H 0.125 0.875 44 H 0.129 0.871 45 H 0.112 0.888 46 H 0.082 0.918 47 H 0.036 0.964 48 H 0.068 0.932 49 H 0.063 0.937 50 H 0.054 0.946 51 H 0.022 0.978 52 H 0.070 0.930 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.744 -8.606 20.009 23.471 hybrid contribution -1.177 -0.163 -0.147 1.198 sum -9.921 -8.769 19.862 23.871 Atomic orbital electron populations 1.22028 0.93853 1.02754 1.02237 1.21547 0.95011 0.95447 0.84566 0.93267 1.22709 0.97300 0.99367 0.95422 1.20893 0.93959 0.95997 0.94645 1.22588 0.95721 0.88278 0.94587 1.48604 1.52210 1.29183 1.04196 1.20498 0.80237 0.85119 0.82956 1.90686 1.41474 1.29296 1.83736 1.22259 1.00908 0.96939 0.82532 1.87960 1.76295 1.53840 1.13366 1.22250 0.98160 0.95033 0.83203 1.22136 1.00865 1.05584 0.90813 1.23169 0.97309 0.98309 1.03283 1.23077 1.03157 0.97196 0.95749 1.21689 1.02041 0.95412 0.95058 1.21088 0.89031 0.92456 0.95706 1.44323 1.14087 1.22933 1.52686 1.20212 1.01549 0.93718 1.32387 0.93040 1.27110 1.09452 0.93794 0.97196 1.70900 1.13063 1.26173 1.48714 0.82904 0.71456 0.75186 0.76857 1.22270 1.20586 1.20109 1.20675 0.97466 0.88450 0.89913 1.21602 0.97212 0.98734 0.96919 0.91146 0.93608 0.90642 0.91763 0.88474 0.87921 0.88946 0.87134 0.88303 0.90844 0.91770 0.88513 0.88136 0.88542 0.87489 0.87137 0.88756 0.91770 0.96438 0.93225 0.93680 0.94597 0.97806 0.93028 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.09 71.98 0.65 -2.97 16 2 C 0.14 3.66 3.08 45.37 0.14 3.80 16 3 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 4 C -0.11 -2.86 4.45 31.56 0.14 -2.72 16 5 C -0.05 -1.41 0.55 -51.92 -0.03 -1.44 16 6 C 0.11 2.12 5.59 86.55 0.48 2.61 16 7 N -0.61 -14.89 3.06 -788.82 -2.41 -17.30 16 8 C 0.52 14.50 7.72 87.66 0.68 15.17 16 9 O -0.57 -21.40 15.54 16.00 0.25 -21.15 16 10 C 0.05 1.03 5.43 71.24 0.39 1.42 16 11 O -0.40 -9.62 9.88 -129.94 -1.28 -10.90 16 12 C 0.09 1.44 6.22 71.99 0.45 1.89 16 13 C -0.18 -2.88 6.06 -10.79 -0.07 -2.95 16 14 C -0.18 -2.53 10.18 30.60 0.31 -2.22 16 15 C -0.15 -1.70 10.25 30.60 0.31 -1.38 16 16 C -0.10 -2.71 4.84 30.42 0.15 -2.57 16 17 C 0.14 5.27 6.25 86.41 0.54 5.81 16 18 N -0.62 -29.17 2.84 -699.35 -1.98 -31.15 16 19 C -0.35 -18.90 9.48 84.03 0.80 -18.11 16 20 H 0.05 2.78 7.94 -2.91 -0.02 2.75 16 21 C -0.08 -4.47 4.69 84.86 0.40 -4.07 16 22 N -0.95 -57.59 12.41 21.65 0.27 -57.32 16 23 Si 1.11 50.43 29.98 68.60 2.06 52.49 16 24 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 25 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 26 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 27 C 0.16 7.30 4.36 86.27 0.38 7.68 16 28 C -0.11 -3.62 4.84 30.27 0.15 -3.47 16 29 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.04 1.31 6.90 -2.39 -0.02 1.29 16 31 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.06 2.03 6.18 -2.38 -0.01 2.01 16 33 H 0.10 2.12 7.68 -2.38 -0.02 2.10 16 34 H 0.10 1.43 7.99 -2.39 -0.02 1.41 16 35 H 0.09 1.52 7.39 -2.39 -0.02 1.50 16 36 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.10 1.53 7.86 -2.39 -0.02 1.52 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.06 0.87 7.88 -2.39 -0.02 0.85 16 40 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.10 1.27 8.03 -2.39 -0.02 1.25 16 42 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.09 1.83 8.09 -2.38 -0.02 1.81 16 46 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.02 0.65 7.62 -2.39 -0.02 0.64 16 48 H 0.05 1.87 7.93 -2.39 -0.02 1.85 16 49 H 0.25 15.70 6.71 -92.71 -0.62 15.07 16 50 H 0.04 1.92 6.29 -2.39 -0.02 1.90 16 51 H 0.00 0.19 6.30 -2.39 -0.02 0.18 16 52 H 0.05 1.76 7.82 -2.39 -0.02 1.74 16 53 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -74.50 406.27 3.77 -70.73 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 1.01 Total: 18.12 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: 5.87 Total: -3.51 kcal Atomic # 7 Polarization: -101.64 SS G_CDS: -4.13 Total: -105.77 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -1.03 Total: -32.05 kcal Atomic # 14 Polarization: 50.43 SS G_CDS: 2.06 Total: 52.49 kcal Total: -74.50 3.77 -70.73 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263935253.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.167 kcal (2) G-P(sol) polarization free energy of solvation -74.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds