Wall clock time and date at job start Tue Mar 31 2020 20:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42895 * 109.47324 * 30.92193 * 3 2 1 5 5 C 1.42899 * 113.99794 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.47511 * 30.00353 * 5 4 3 7 7 C 1.52998 * 109.47552 * 269.99778 * 5 4 3 8 8 C 1.50709 * 109.46965 * 150.00355 * 5 4 3 9 9 O 1.21281 * 119.99836 * 4.99772 * 8 5 4 10 10 N 1.34778 * 119.99813 * 185.00386 * 8 5 4 11 11 C 1.46928 * 120.63165 * 5.63787 * 10 8 5 12 12 C 1.53191 * 108.77505 * 126.41398 * 11 10 8 13 13 C 1.53043 * 109.31211 * 54.63557 * 12 11 10 14 14 C 1.53075 * 109.65908 * 298.69803 * 13 12 11 15 15 H 1.09001 * 109.62447 * 181.17039 * 14 13 12 16 16 C 1.52998 * 109.38896 * 301.27854 * 14 13 12 17 17 C 1.46926 * 120.62876 * 185.66276 * 10 8 5 18 18 H 1.08991 * 109.59039 * 113.65302 * 17 10 8 19 19 C 1.53003 * 109.58432 * 353.36927 * 17 10 8 20 20 C 1.52998 * 109.46879 * 180.02562 * 19 17 10 21 21 C 1.53001 * 109.47254 * 175.06224 * 20 19 17 22 22 N 1.46500 * 109.47514 * 180.02562 * 21 20 19 23 23 C 1.36935 * 120.00283 * 179.97438 * 22 21 20 24 24 H 1.07997 * 120.00031 * 0.02562 * 23 22 21 25 25 C 1.38812 * 119.99768 * 179.97438 * 23 22 21 26 26 N 1.31619 * 120.00407 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99625 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.47199 * 180.02562 * 27 25 23 29 29 H 1.48500 * 109.47322 * 60.00288 * 27 25 23 30 30 H 1.48504 * 109.47436 * 300.00212 * 27 25 23 31 31 H 4.38445 * 5.44449 * 180.02562 * 4 1 2 32 32 H 1.08996 * 109.46944 * 270.91725 * 3 2 1 33 33 H 1.09003 * 109.46659 * 150.92162 * 3 2 1 34 34 H 1.08997 * 109.47670 * 180.02562 * 7 5 4 35 35 H 1.09001 * 109.47182 * 300.00777 * 7 5 4 36 36 H 1.09005 * 109.46528 * 59.99907 * 7 5 4 37 37 H 1.08998 * 109.58287 * 246.20094 * 11 10 8 38 38 H 1.08998 * 109.58607 * 6.62428 * 11 10 8 39 39 H 1.09001 * 109.49282 * 174.58306 * 12 11 10 40 40 H 1.08993 * 109.50165 * 294.65359 * 12 11 10 41 41 H 1.08998 * 109.46076 * 58.65261 * 13 12 11 42 42 H 1.08996 * 109.46150 * 178.62396 * 13 12 11 43 43 H 1.08998 * 109.47222 * 179.75072 * 16 14 13 44 44 H 1.08997 * 109.47439 * 299.74797 * 16 14 13 45 45 H 1.09003 * 109.47219 * 59.75480 * 16 14 13 46 46 H 1.08997 * 109.47265 * 60.04811 * 19 17 10 47 47 H 1.08995 * 109.47132 * 300.04563 * 19 17 10 48 48 H 1.08997 * 109.47076 * 55.06061 * 20 19 17 49 49 H 1.09004 * 109.47413 * 295.06093 * 20 19 17 50 50 H 1.08997 * 109.47212 * 59.99920 * 21 20 19 51 51 H 1.09004 * 109.46803 * 300.00242 * 21 20 19 52 52 H 0.97007 * 119.99810 * 359.97438 * 22 21 20 53 53 H 0.97003 * 119.99520 * 359.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1229 -1.1549 -0.6923 5 6 4.5475 -1.2506 -0.7507 6 1 4.9800 -0.7778 0.1310 7 6 5.0551 -0.5438 -2.0091 8 6 4.9521 -2.7018 -0.7920 9 8 4.1042 -3.5659 -0.8648 10 7 6.2562 -3.0392 -0.7479 11 6 7.2878 -2.0148 -0.5359 12 6 8.1643 -2.4352 0.6481 13 6 8.7162 -3.8401 0.3955 14 6 7.5585 -4.8342 0.2746 15 1 7.9528 -5.8378 0.1154 16 6 6.7304 -4.8082 1.5609 17 6 6.6733 -4.4385 -0.9115 18 1 7.2355 -4.5463 -1.8389 19 6 5.4380 -5.3404 -0.9529 20 6 5.8753 -6.7967 -1.1226 21 6 4.6504 -7.7099 -1.0407 22 7 5.0691 -9.1044 -1.2026 23 6 4.1381 -10.1078 -1.1641 24 1 3.0950 -9.8711 -1.0148 25 6 4.5349 -11.4290 -1.3180 26 7 5.8060 -11.7175 -1.5006 27 14 3.2648 -12.7978 -1.2648 28 1 3.9400 -14.1071 -1.4524 29 1 2.2707 -12.5932 -2.3488 30 1 2.5742 -12.7815 0.0498 31 1 -1.0498 -0.0002 -0.0004 32 1 3.0093 -0.0156 1.0275 33 1 3.0089 0.8990 -0.4995 34 1 6.1416 -0.6173 -2.0540 35 1 4.6226 -1.0167 -2.8909 36 1 4.7623 0.5058 -1.9793 37 1 7.9024 -1.9243 -1.4315 38 1 6.8133 -1.0580 -0.3177 39 1 8.9913 -1.7334 0.7557 40 1 7.5675 -2.4369 1.5601 41 1 9.2926 -3.8429 -0.5297 42 1 9.3599 -4.1320 1.2252 43 1 5.9029 -5.5125 1.4745 44 1 7.3605 -5.0898 2.4045 45 1 6.3376 -3.8040 1.7199 46 1 4.8050 -5.0513 -1.7918 47 1 4.8795 -5.2345 -0.0229 48 1 6.5780 -7.0595 -0.3320 49 1 6.3568 -6.9208 -2.0927 50 1 3.9477 -7.4470 -1.8314 51 1 4.1689 -7.5857 -0.0707 52 1 6.0060 -9.3170 -1.3371 53 1 6.4655 -11.0067 -1.5278 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264572714.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:46 Heat of formation + Delta-G solvation = -27.528547 kcal Electronic energy + Delta-G solvation = -30370.401592 eV Core-core repulsion = 26436.701657 eV Total energy + Delta-G solvation = -3933.699934 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.02785 -39.68275 -38.36315 -37.57488 -35.79417 -34.61770 -34.26098 -33.13879 -32.01212 -30.93167 -28.36283 -28.12148 -27.22041 -26.06819 -24.84305 -24.58151 -23.22569 -21.99879 -21.15723 -19.85738 -19.43547 -19.19267 -18.03667 -17.70327 -17.30761 -16.87834 -16.64907 -16.45644 -16.02265 -15.88347 -15.67702 -15.47615 -15.20355 -15.15191 -14.83067 -14.46156 -14.24563 -14.03538 -13.70300 -13.51388 -13.37265 -13.24530 -13.01624 -12.97592 -12.67308 -12.64427 -12.54119 -12.37441 -12.19329 -12.00617 -11.90340 -11.84056 -11.71732 -11.65725 -11.52463 -11.42461 -11.24768 -11.15443 -10.97832 -10.68080 -9.93052 -9.51853 -9.19449 -8.48293 -5.41334 1.31328 1.54203 1.58428 1.65283 1.78207 1.82558 1.93454 2.66778 2.95716 3.32510 3.33583 3.58589 3.66418 3.73845 3.80712 3.85759 3.89910 4.00622 4.07859 4.11082 4.15076 4.21500 4.23335 4.42638 4.44148 4.48270 4.55806 4.60508 4.62614 4.68085 4.74664 4.79293 4.81161 4.84855 4.92040 4.96170 4.98408 5.02410 5.11168 5.19730 5.20847 5.22300 5.28887 5.37120 5.42735 5.50373 5.52212 5.70621 6.00962 6.43019 6.45007 6.56516 7.02634 7.22499 7.92273 8.05089 9.04160 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.010446 B = 0.002745 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2679.825142 B =10196.225287 C =12272.208949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.238 4.238 3 C 0.165 3.835 4 O -0.390 6.390 5 C 0.073 3.927 6 H 0.123 0.877 7 C -0.170 4.170 8 C 0.500 3.500 9 O -0.560 6.560 10 N -0.598 5.598 11 C 0.094 3.906 12 C -0.134 4.134 13 C -0.112 4.112 14 C -0.104 4.104 15 H 0.073 0.927 16 C -0.141 4.141 17 C 0.159 3.841 18 H 0.080 0.920 19 C -0.085 4.085 20 C -0.117 4.117 21 C 0.163 3.837 22 N -0.756 5.756 23 C -0.345 4.345 24 H 0.059 0.941 25 C -0.102 4.102 26 N -0.970 5.970 27 Si 1.132 2.868 28 H -0.285 1.285 29 H -0.278 1.278 30 H -0.277 1.277 31 H 0.249 0.751 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.046 0.954 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.112 0.888 39 H 0.105 0.895 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.029 0.971 44 H 0.061 0.939 45 H 0.059 0.941 46 H 0.056 0.944 47 H 0.059 0.941 48 H 0.066 0.934 49 H 0.058 0.942 50 H 0.003 0.997 51 H 0.005 0.995 52 H 0.363 0.637 53 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.977 35.151 4.875 35.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.238 4.238 3 C 0.091 3.909 4 O -0.310 6.310 5 C 0.012 3.988 6 H 0.141 0.859 7 C -0.227 4.227 8 C 0.288 3.712 9 O -0.438 6.438 10 N -0.332 5.332 11 C -0.026 4.026 12 C -0.172 4.172 13 C -0.149 4.149 14 C -0.123 4.123 15 H 0.092 0.908 16 C -0.199 4.199 17 C 0.056 3.944 18 H 0.098 0.902 19 C -0.123 4.123 20 C -0.155 4.155 21 C 0.037 3.963 22 N -0.401 5.401 23 C -0.476 4.476 24 H 0.077 0.923 25 C -0.293 4.293 26 N -0.617 5.617 27 Si 0.955 3.045 28 H -0.210 1.210 29 H -0.204 1.204 30 H -0.203 1.203 31 H 0.266 0.734 32 H 0.110 0.890 33 H 0.123 0.877 34 H 0.120 0.880 35 H 0.065 0.935 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.130 0.870 39 H 0.123 0.877 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.048 0.952 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.078 0.922 48 H 0.085 0.915 49 H 0.076 0.924 50 H 0.021 0.979 51 H 0.023 0.977 52 H 0.195 0.805 53 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 4.947 33.029 4.691 33.725 hybrid contribution 0.075 1.146 0.074 1.150 sum 5.022 34.175 4.765 34.869 Atomic orbital electron populations 1.25867 0.97023 0.97077 0.98755 1.23242 0.95264 1.02996 1.02273 1.19472 0.84280 0.89171 0.98008 1.88100 1.20588 1.45235 1.77070 1.22120 0.82084 0.92221 1.02366 0.85931 1.22355 1.03286 1.01708 0.95338 1.21075 0.82473 0.91496 0.76163 1.90837 1.52086 1.51203 1.49646 1.48109 1.05507 1.08320 1.71310 1.22294 0.89724 0.90766 0.99856 1.21985 1.00228 0.96988 0.97967 1.21551 0.96026 0.94410 1.02918 1.21560 0.96212 1.00307 0.94260 0.90831 1.21822 0.99388 1.01339 0.97315 1.21215 0.94708 0.80046 0.98456 0.90207 1.21816 0.96416 0.91368 1.02747 1.21789 0.96829 0.95375 1.01516 1.20594 0.96112 0.83406 0.96193 1.42586 1.06365 1.02322 1.88860 1.20420 0.90813 0.89976 1.46382 0.92277 1.27382 1.01837 1.00241 0.99833 1.70988 1.01321 1.34271 1.55166 0.82608 0.71919 0.72834 0.77167 1.21048 1.20385 1.20326 0.73448 0.89022 0.87688 0.88049 0.93501 0.88708 0.88995 0.87024 0.87676 0.91669 0.90730 0.90930 0.95156 0.91980 0.92250 0.92513 0.92230 0.91539 0.92368 0.97872 0.97653 0.80515 0.94562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.03 19.25 74.32 1.43 -1.60 16 2 C -0.24 -4.86 13.73 31.13 0.43 -4.43 16 3 C 0.17 2.55 6.22 70.18 0.44 2.99 16 4 O -0.39 -9.11 9.48 -129.99 -1.23 -10.34 16 5 C 0.07 1.16 2.29 29.85 0.07 1.23 16 6 H 0.12 0.96 6.82 -2.39 -0.02 0.94 16 7 C -0.17 -1.73 9.17 71.98 0.66 -1.07 16 8 C 0.50 12.26 7.00 87.66 0.61 12.88 16 9 O -0.56 -20.55 11.91 15.96 0.19 -20.36 16 10 N -0.60 -11.14 2.42 -795.01 -1.93 -13.06 16 11 C 0.09 0.76 4.90 86.36 0.42 1.18 16 12 C -0.13 -1.05 5.74 30.67 0.18 -0.88 16 13 C -0.11 -1.40 5.42 30.63 0.17 -1.23 16 14 C -0.10 -2.14 2.32 -10.70 -0.02 -2.17 16 15 H 0.07 1.73 6.66 -2.39 -0.02 1.71 16 16 C -0.14 -3.28 8.21 71.98 0.59 -2.69 16 17 C 0.16 3.76 2.71 44.98 0.12 3.88 16 18 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 19 C -0.09 -2.89 2.65 30.59 0.08 -2.81 16 20 C -0.12 -4.45 5.12 30.59 0.16 -4.29 16 21 C 0.16 8.06 6.26 86.38 0.54 8.60 16 22 N -0.76 -43.66 5.60 -343.45 -1.92 -45.58 16 23 C -0.34 -21.67 9.99 84.03 0.84 -20.83 16 24 H 0.06 3.69 7.83 -2.91 -0.02 3.66 16 25 C -0.10 -6.35 5.50 84.86 0.47 -5.89 16 26 N -0.97 -63.89 13.70 21.65 0.30 -63.59 16 27 Si 1.13 55.27 29.92 68.60 2.05 57.33 16 28 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 29 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 30 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 31 H 0.25 2.41 7.80 -4.43 -0.03 2.37 16 32 H 0.09 1.01 8.09 -2.39 -0.02 0.99 16 33 H 0.11 0.89 7.87 -2.39 -0.02 0.87 16 34 H 0.10 0.52 5.83 -2.39 -0.01 0.50 16 35 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.09 0.52 7.87 -2.38 -0.02 0.50 16 37 H 0.09 0.47 8.12 -2.39 -0.02 0.45 16 38 H 0.11 0.29 5.01 -2.39 -0.01 0.28 16 39 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 40 H 0.06 0.64 6.34 -2.39 -0.02 0.63 16 41 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.03 0.90 6.34 -2.39 -0.02 0.88 16 44 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.06 1.27 5.97 -2.39 -0.01 1.25 16 46 H 0.06 2.22 6.46 -2.39 -0.02 2.20 16 47 H 0.06 2.27 5.21 -2.39 -0.01 2.26 16 48 H 0.07 2.43 6.33 -2.39 -0.02 2.42 16 49 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 50 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 51 H 0.01 0.28 8.14 -2.38 -0.02 0.26 16 52 H 0.36 20.96 6.50 -92.70 -0.60 20.36 16 53 H 0.24 16.01 6.77 -92.71 -0.63 15.38 16 Total: -1.00 -88.99 405.95 5.07 -83.92 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: 0.44 Total: 28.82 kcal Atomic # 6 Polarization: -24.31 SS G_CDS: 7.17 Total: -17.14 kcal Atomic # 7 Polarization: -118.68 SS G_CDS: -3.55 Total: -122.24 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -1.04 Total: -30.70 kcal Atomic # 14 Polarization: 55.27 SS G_CDS: 2.05 Total: 57.33 kcal Total: -88.99 5.07 -83.92 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264572714.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.393 kcal (2) G-P(sol) polarization free energy of solvation -88.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds