Wall clock time and date at job start Tue Mar 31 2020 20:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42897 * 109.47084 * 222.70117 * 3 2 1 5 5 C 1.42901 * 113.99924 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.47069 * 330.00419 * 5 4 3 7 7 C 1.53006 * 109.46978 * 90.00187 * 5 4 3 8 8 C 1.50702 * 109.47446 * 210.00163 * 5 4 3 9 9 O 1.21282 * 119.99683 * 344.30338 * 8 5 4 10 10 N 1.34768 * 120.00170 * 164.29657 * 8 5 4 11 11 C 1.46923 * 120.63330 * 5.39510 * 10 8 5 12 12 C 1.53197 * 108.77765 * 126.36901 * 11 10 8 13 13 C 1.53040 * 109.31064 * 54.63403 * 12 11 10 14 14 C 1.53071 * 109.65953 * 298.70127 * 13 12 11 15 15 H 1.08998 * 109.61968 * 181.17095 * 14 13 12 16 16 C 1.52999 * 109.39063 * 301.27596 * 14 13 12 17 17 C 1.46930 * 120.63026 * 185.37287 * 10 8 5 18 18 H 1.09000 * 109.58514 * 113.70261 * 17 10 8 19 19 C 1.52997 * 109.58519 * 353.41618 * 17 10 8 20 20 C 1.53003 * 109.47153 * 180.02562 * 19 17 10 21 21 C 1.53001 * 109.47215 * 175.56572 * 20 19 17 22 22 N 1.46500 * 109.46814 * 179.97438 * 21 20 19 23 23 C 1.36938 * 119.99879 * 180.02562 * 22 21 20 24 24 H 1.07999 * 120.00029 * 359.97438 * 23 22 21 25 25 C 1.38807 * 120.00192 * 180.02562 * 23 22 21 26 26 N 1.31621 * 120.00326 * 179.97438 * 25 23 22 27 27 Si 1.86801 * 120.00148 * 359.97438 * 25 23 22 28 28 H 1.48498 * 109.47577 * 270.00607 * 27 25 23 29 29 H 1.48496 * 109.47355 * 150.00330 * 27 25 23 30 30 H 1.48507 * 109.47114 * 30.00473 * 27 25 23 31 31 H 4.38442 * 5.44460 * 179.97438 * 4 1 2 32 32 H 1.08996 * 109.47266 * 102.69954 * 3 2 1 33 33 H 1.08999 * 109.47103 * 342.70509 * 3 2 1 34 34 H 1.09001 * 109.46972 * 304.60333 * 7 5 4 35 35 H 1.08998 * 109.46654 * 64.59967 * 7 5 4 36 36 H 1.08998 * 109.46765 * 184.60196 * 7 5 4 37 37 H 1.08997 * 109.59017 * 246.15463 * 11 10 8 38 38 H 1.09001 * 109.58351 * 6.58102 * 11 10 8 39 39 H 1.09000 * 109.49778 * 174.58968 * 12 11 10 40 40 H 1.09004 * 109.49514 * 294.65240 * 12 11 10 41 41 H 1.08998 * 109.45958 * 58.66021 * 13 12 11 42 42 H 1.09000 * 109.45728 * 178.63165 * 13 12 11 43 43 H 1.09006 * 109.46829 * 179.74932 * 16 14 13 44 44 H 1.08999 * 109.47268 * 299.75443 * 16 14 13 45 45 H 1.09006 * 109.46915 * 59.75324 * 16 14 13 46 46 H 1.08998 * 109.47281 * 60.05758 * 19 17 10 47 47 H 1.09001 * 109.47536 * 300.05585 * 19 17 10 48 48 H 1.08998 * 109.47059 * 55.55890 * 20 19 17 49 49 H 1.09010 * 109.46693 * 295.56504 * 20 19 17 50 50 H 1.09006 * 109.47153 * 60.00059 * 21 20 19 51 51 H 1.08997 * 109.47105 * 299.99928 * 21 20 19 52 52 H 0.97002 * 120.00203 * 0.02562 * 22 21 20 53 53 H 0.96996 * 120.00237 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1219 0.9910 0.9137 5 6 4.5464 1.0741 0.9906 6 1 4.9791 0.0948 0.7862 7 6 5.0549 2.0820 -0.0422 8 6 4.9496 1.5232 2.3715 9 8 4.1271 2.0190 3.1122 10 7 6.2240 1.3737 2.7834 11 6 7.2568 0.8847 1.8599 12 6 8.4234 1.8777 1.8542 13 6 8.9129 2.0916 3.2884 14 6 7.7822 2.6797 4.1362 15 1 8.1377 2.8511 5.1522 16 6 7.3249 4.0052 3.5240 17 6 6.6072 1.6971 4.1645 18 1 6.9050 0.7862 4.6839 19 6 5.4213 2.3366 4.8894 20 6 5.8233 2.6728 6.3269 21 6 4.6754 3.4116 7.0179 22 7 5.0602 3.7330 8.3945 23 6 4.1860 4.3981 9.2122 24 1 3.2132 4.6861 8.8422 25 6 4.5507 4.7031 10.5163 26 7 3.7107 5.3429 11.3021 27 14 6.2337 4.2056 11.1562 28 1 6.1536 2.8508 11.7588 29 1 6.6799 5.1792 12.1848 30 1 7.2058 4.1913 10.0335 31 1 -1.0501 -0.0001 -0.0003 32 1 3.0092 0.2267 -1.0025 33 1 3.0098 -0.9804 0.3055 34 1 4.6942 1.8014 -1.0318 35 1 4.6878 3.0769 0.2098 36 1 6.1449 2.0855 -0.0402 37 1 7.6100 -0.0919 2.1906 38 1 6.8405 0.8043 0.8557 39 1 9.2369 1.4798 1.2476 40 1 8.0900 2.8282 1.4375 41 1 9.2231 1.1366 3.7124 42 1 9.7587 2.7791 3.2846 43 1 6.5165 4.4229 4.1243 44 1 8.1612 4.7039 3.5040 45 1 6.9709 3.8330 2.5075 46 1 4.5834 1.6395 4.9006 47 1 5.1277 3.2493 4.3709 48 1 6.7099 3.3067 6.3174 49 1 6.0408 1.7519 6.8681 50 1 3.7888 2.7776 7.0275 51 1 4.4579 4.3324 6.4767 52 1 5.9342 3.4746 8.7267 53 1 3.9654 5.5557 12.2135 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264572715.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:51 Heat of formation + Delta-G solvation = 1.787274 kcal Electronic energy + Delta-G solvation = -30417.794469 eV Core-core repulsion = 26485.365764 eV Total energy + Delta-G solvation = -3932.428705 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.17914 -38.92730 -37.50073 -35.85114 -34.39255 -33.59379 -33.29196 -31.67220 -31.31004 -29.90916 -27.52577 -27.37212 -26.42686 -24.83291 -23.97619 -22.95586 -21.40119 -20.90254 -20.31086 -19.09938 -18.40271 -17.44613 -17.36571 -17.06829 -16.17580 -15.96642 -15.63016 -15.26284 -15.01058 -14.62592 -14.41625 -14.38778 -13.95210 -13.90286 -13.72627 -13.57671 -13.04193 -12.90480 -12.71025 -12.67991 -12.57467 -12.26094 -11.92422 -11.83799 -11.76865 -11.65069 -11.28682 -11.13373 -11.03666 -10.94650 -10.86019 -10.82518 -10.77826 -10.67297 -10.21197 -10.11221 -10.01473 -9.98092 -9.47851 -8.93278 -8.76945 -8.65416 -7.09355 -5.65973 -3.00032 2.00790 2.45029 2.48086 2.70300 3.44300 3.47026 3.51317 3.58718 4.02197 4.21860 4.33114 4.44081 4.50979 4.57528 4.62010 4.68631 4.72354 4.73404 4.92076 4.93686 4.95118 5.08610 5.13542 5.22296 5.31464 5.36925 5.46920 5.52018 5.53853 5.55534 5.57582 5.63292 5.67599 5.72283 5.77962 5.89370 5.92502 5.97024 6.13752 6.16288 6.26945 6.32112 6.43659 6.49981 6.63716 6.82879 7.01062 7.02676 7.23099 7.24876 8.08914 8.13172 8.53850 9.33953 10.06498 10.27740 11.53007 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.010988 B = 0.002857 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.685139 B = 9797.108256 C =11886.708509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.197 4.197 3 C 0.172 3.828 4 O -0.349 6.349 5 C 0.070 3.930 6 H 0.083 0.917 7 C -0.176 4.176 8 C 0.512 3.488 9 O -0.494 6.494 10 N -0.606 5.606 11 C 0.099 3.901 12 C -0.137 4.137 13 C -0.115 4.115 14 C -0.106 4.106 15 H 0.088 0.912 16 C -0.147 4.147 17 C 0.155 3.845 18 H 0.071 0.929 19 C -0.105 4.105 20 C -0.137 4.137 21 C 0.161 3.839 22 N -0.759 5.759 23 C -0.238 4.238 24 H 0.090 0.910 25 C -0.001 4.001 26 N -0.938 5.938 27 Si 0.886 3.114 28 H -0.285 1.285 29 H -0.292 1.292 30 H -0.278 1.278 31 H 0.223 0.777 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.051 0.949 45 H 0.053 0.947 46 H 0.084 0.916 47 H 0.081 0.919 48 H 0.059 0.941 49 H 0.055 0.945 50 H 0.026 0.974 51 H 0.025 0.975 52 H 0.359 0.641 53 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.640 -13.939 -31.301 35.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.197 4.197 3 C 0.096 3.904 4 O -0.267 6.267 5 C 0.009 3.991 6 H 0.101 0.899 7 C -0.233 4.233 8 C 0.298 3.702 9 O -0.367 6.367 10 N -0.342 5.342 11 C -0.024 4.024 12 C -0.176 4.176 13 C -0.153 4.153 14 C -0.126 4.126 15 H 0.106 0.894 16 C -0.204 4.204 17 C 0.053 3.947 18 H 0.089 0.911 19 C -0.143 4.143 20 C -0.175 4.175 21 C 0.034 3.966 22 N -0.404 5.404 23 C -0.368 4.368 24 H 0.107 0.893 25 C -0.196 4.196 26 N -0.587 5.587 27 Si 0.716 3.284 28 H -0.212 1.212 29 H -0.218 1.218 30 H -0.204 1.204 31 H 0.240 0.760 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.102 0.898 47 H 0.100 0.900 48 H 0.078 0.922 49 H 0.074 0.926 50 H 0.044 0.956 51 H 0.043 0.957 52 H 0.191 0.809 53 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.839 -13.433 -30.720 34.674 hybrid contribution 1.292 -0.519 0.396 1.447 sum 10.131 -13.952 -30.324 34.883 Atomic orbital electron populations 1.25018 0.95935 0.98520 0.98832 1.22370 0.93771 1.01880 1.01724 1.19153 0.85217 0.92235 0.93792 1.88159 1.18831 1.56927 1.62810 1.21993 0.82926 0.99958 0.94256 0.89876 1.22355 1.01772 1.00646 0.98541 1.20230 0.82221 0.79643 0.88092 1.90862 1.50920 1.41105 1.53810 1.48040 1.07451 1.66401 1.12266 1.21902 0.89124 0.97579 0.93750 1.21965 0.97527 1.00081 0.97980 1.21558 0.97874 1.01135 0.94703 1.21596 0.94835 0.95694 1.00431 0.89422 1.21889 1.01483 0.96069 1.00993 1.21411 0.95731 0.97392 0.80183 0.91083 1.22116 0.95828 1.02665 0.93693 1.21980 0.99551 1.00282 0.95719 1.20554 0.94758 0.96311 0.84995 1.42760 1.17010 1.70651 1.09962 1.19122 0.97352 1.27781 0.92530 0.89265 1.24678 0.97697 1.00780 0.96413 1.69710 1.35385 1.46090 1.07482 0.86511 0.85475 0.77992 0.78377 1.21182 1.21835 1.20380 0.76043 0.90727 0.90751 0.91082 0.90711 0.90487 0.91198 0.89652 0.90834 0.90900 0.91848 0.91576 0.91522 0.93016 0.92813 0.89795 0.90024 0.92219 0.92586 0.95602 0.95736 0.80876 0.93204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 19.25 29.55 0.57 -0.91 16 2 C -0.20 -2.01 13.73 -37.12 -0.51 -2.52 16 3 C 0.17 1.40 6.22 34.37 0.21 1.61 16 4 O -0.35 -4.04 9.53 -54.63 -0.52 -4.56 16 5 C 0.07 0.60 2.28 -27.88 -0.06 0.54 16 6 H 0.08 0.46 6.98 -51.93 -0.36 0.09 16 7 C -0.18 -1.12 9.18 37.16 0.34 -0.78 16 8 C 0.51 6.10 6.92 -10.99 -0.08 6.02 16 9 O -0.49 -8.24 11.98 -13.85 -0.17 -8.41 16 10 N -0.61 -5.80 2.42 -165.22 -0.40 -6.20 16 11 C 0.10 0.57 5.75 -3.71 -0.02 0.55 16 12 C -0.14 -0.76 5.74 -26.61 -0.15 -0.91 16 13 C -0.12 -0.83 5.42 -26.67 -0.14 -0.97 16 14 C -0.11 -1.06 2.31 -90.48 -0.21 -1.27 16 15 H 0.09 0.95 6.67 -51.93 -0.35 0.60 16 16 C -0.15 -1.59 8.21 37.16 0.30 -1.28 16 17 C 0.16 1.75 2.71 -67.60 -0.18 1.56 16 18 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 19 C -0.11 -1.58 2.65 -26.73 -0.07 -1.65 16 20 C -0.14 -2.30 5.11 -26.73 -0.14 -2.44 16 21 C 0.16 3.51 6.26 -4.04 -0.03 3.49 16 22 N -0.76 -19.64 5.41 -59.91 -0.32 -19.97 16 23 C -0.24 -7.23 10.47 -15.06 -0.16 -7.39 16 24 H 0.09 2.91 8.06 -52.49 -0.42 2.49 16 25 C 0.00 -0.02 5.50 -17.43 -0.10 -0.12 16 26 N -0.94 -30.84 13.97 55.49 0.78 -30.07 16 27 Si 0.89 23.12 27.74 -169.99 -4.71 18.41 16 28 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 29 H -0.29 -7.65 7.11 56.52 0.40 -7.24 16 30 H -0.28 -6.80 6.52 56.52 0.37 -6.43 16 31 H 0.22 1.16 7.80 -54.08 -0.42 0.74 16 32 H 0.07 0.40 7.79 -51.93 -0.40 0.00 16 33 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 34 H 0.07 0.33 7.79 -51.93 -0.40 -0.07 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.34 5.98 -51.93 -0.31 0.03 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.09 0.32 4.23 -51.93 -0.22 0.10 16 39 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.07 0.45 6.34 -51.93 -0.33 0.12 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.88 6.34 -51.93 -0.33 0.55 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.05 0.55 5.97 -51.93 -0.31 0.24 16 46 H 0.08 1.44 6.45 -51.93 -0.33 1.11 16 47 H 0.08 1.35 5.22 -51.93 -0.27 1.08 16 48 H 0.06 0.96 6.35 -51.93 -0.33 0.63 16 49 H 0.06 0.92 8.14 -51.92 -0.42 0.49 16 50 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 51 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 52 H 0.36 8.93 5.53 -40.82 -0.23 8.70 16 53 H 0.26 8.03 8.31 -40.82 -0.34 7.69 16 LS Contribution 404.83 15.07 6.10 6.10 Total: -1.00 -37.87 404.83 -8.51 -46.38 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -8.84 Total: 4.77 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -0.42 Total: -6.46 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: 0.05 Total: -56.23 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -0.69 Total: -12.97 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -4.71 Total: 18.41 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -37.87 -8.51 -46.38 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264572715.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.168 kcal (2) G-P(sol) polarization free energy of solvation -37.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds