Wall clock time and date at job start Tue Mar 31 2020 20:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42897 * 109.47084 * 222.70117 * 3 2 1 5 5 C 1.42901 * 113.99924 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.47069 * 330.00419 * 5 4 3 7 7 C 1.53006 * 109.46978 * 90.00187 * 5 4 3 8 8 C 1.50702 * 109.47446 * 210.00163 * 5 4 3 9 9 O 1.21282 * 119.99683 * 344.30338 * 8 5 4 10 10 N 1.34768 * 120.00170 * 164.29657 * 8 5 4 11 11 C 1.46923 * 120.63330 * 5.39510 * 10 8 5 12 12 C 1.53197 * 108.77765 * 126.36901 * 11 10 8 13 13 C 1.53040 * 109.31064 * 54.63403 * 12 11 10 14 14 C 1.53071 * 109.65953 * 298.70127 * 13 12 11 15 15 H 1.08998 * 109.61968 * 181.17095 * 14 13 12 16 16 C 1.52999 * 109.39063 * 301.27596 * 14 13 12 17 17 C 1.46930 * 120.63026 * 185.37287 * 10 8 5 18 18 H 1.09000 * 109.58514 * 113.70261 * 17 10 8 19 19 C 1.52997 * 109.58519 * 353.41618 * 17 10 8 20 20 C 1.53003 * 109.47153 * 180.02562 * 19 17 10 21 21 C 1.53001 * 109.47215 * 175.56572 * 20 19 17 22 22 N 1.46500 * 109.46814 * 179.97438 * 21 20 19 23 23 C 1.36938 * 119.99879 * 180.02562 * 22 21 20 24 24 H 1.07999 * 120.00029 * 359.97438 * 23 22 21 25 25 C 1.38807 * 120.00192 * 180.02562 * 23 22 21 26 26 N 1.31621 * 120.00326 * 179.97438 * 25 23 22 27 27 Si 1.86801 * 120.00148 * 359.97438 * 25 23 22 28 28 H 1.48498 * 109.47577 * 270.00607 * 27 25 23 29 29 H 1.48496 * 109.47355 * 150.00330 * 27 25 23 30 30 H 1.48507 * 109.47114 * 30.00473 * 27 25 23 31 31 H 4.38442 * 5.44460 * 179.97438 * 4 1 2 32 32 H 1.08996 * 109.47266 * 102.69954 * 3 2 1 33 33 H 1.08999 * 109.47103 * 342.70509 * 3 2 1 34 34 H 1.09001 * 109.46972 * 304.60333 * 7 5 4 35 35 H 1.08998 * 109.46654 * 64.59967 * 7 5 4 36 36 H 1.08998 * 109.46765 * 184.60196 * 7 5 4 37 37 H 1.08997 * 109.59017 * 246.15463 * 11 10 8 38 38 H 1.09001 * 109.58351 * 6.58102 * 11 10 8 39 39 H 1.09000 * 109.49778 * 174.58968 * 12 11 10 40 40 H 1.09004 * 109.49514 * 294.65240 * 12 11 10 41 41 H 1.08998 * 109.45958 * 58.66021 * 13 12 11 42 42 H 1.09000 * 109.45728 * 178.63165 * 13 12 11 43 43 H 1.09006 * 109.46829 * 179.74932 * 16 14 13 44 44 H 1.08999 * 109.47268 * 299.75443 * 16 14 13 45 45 H 1.09006 * 109.46915 * 59.75324 * 16 14 13 46 46 H 1.08998 * 109.47281 * 60.05758 * 19 17 10 47 47 H 1.09001 * 109.47536 * 300.05585 * 19 17 10 48 48 H 1.08998 * 109.47059 * 55.55890 * 20 19 17 49 49 H 1.09010 * 109.46693 * 295.56504 * 20 19 17 50 50 H 1.09006 * 109.47153 * 60.00059 * 21 20 19 51 51 H 1.08997 * 109.47105 * 299.99928 * 21 20 19 52 52 H 0.97002 * 120.00203 * 0.02562 * 22 21 20 53 53 H 0.96996 * 120.00237 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1219 0.9910 0.9137 5 6 4.5464 1.0741 0.9906 6 1 4.9791 0.0948 0.7862 7 6 5.0549 2.0820 -0.0422 8 6 4.9496 1.5232 2.3715 9 8 4.1271 2.0190 3.1122 10 7 6.2240 1.3737 2.7834 11 6 7.2568 0.8847 1.8599 12 6 8.4234 1.8777 1.8542 13 6 8.9129 2.0916 3.2884 14 6 7.7822 2.6797 4.1362 15 1 8.1377 2.8511 5.1522 16 6 7.3249 4.0052 3.5240 17 6 6.6072 1.6971 4.1645 18 1 6.9050 0.7862 4.6839 19 6 5.4213 2.3366 4.8894 20 6 5.8233 2.6728 6.3269 21 6 4.6754 3.4116 7.0179 22 7 5.0602 3.7330 8.3945 23 6 4.1860 4.3981 9.2122 24 1 3.2132 4.6861 8.8422 25 6 4.5507 4.7031 10.5163 26 7 3.7107 5.3429 11.3021 27 14 6.2337 4.2056 11.1562 28 1 6.1536 2.8508 11.7588 29 1 6.6799 5.1792 12.1848 30 1 7.2058 4.1913 10.0335 31 1 -1.0501 -0.0001 -0.0003 32 1 3.0092 0.2267 -1.0025 33 1 3.0098 -0.9804 0.3055 34 1 4.6942 1.8014 -1.0318 35 1 4.6878 3.0769 0.2098 36 1 6.1449 2.0855 -0.0402 37 1 7.6100 -0.0919 2.1906 38 1 6.8405 0.8043 0.8557 39 1 9.2369 1.4798 1.2476 40 1 8.0900 2.8282 1.4375 41 1 9.2231 1.1366 3.7124 42 1 9.7587 2.7791 3.2846 43 1 6.5165 4.4229 4.1243 44 1 8.1612 4.7039 3.5040 45 1 6.9709 3.8330 2.5075 46 1 4.5834 1.6395 4.9006 47 1 5.1277 3.2493 4.3709 48 1 6.7099 3.3067 6.3174 49 1 6.0408 1.7519 6.8681 50 1 3.7888 2.7776 7.0275 51 1 4.4579 4.3324 6.4767 52 1 5.9342 3.4746 8.7267 53 1 3.9654 5.5557 12.2135 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264572715.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:50 Heat of formation + Delta-G solvation = -22.980425 kcal Electronic energy + Delta-G solvation = -30418.868477 eV Core-core repulsion = 26485.365764 eV Total energy + Delta-G solvation = -3933.502713 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.99249 -39.65123 -38.33954 -37.47648 -35.62678 -34.49109 -34.24603 -33.39756 -32.08206 -31.30061 -28.52503 -28.12353 -27.29509 -26.07990 -24.64734 -24.37843 -22.99050 -22.03254 -21.22211 -19.75469 -19.64524 -19.13917 -18.08410 -17.80776 -17.01982 -16.75202 -16.60895 -16.53614 -15.98265 -15.82556 -15.62321 -15.45533 -15.16816 -14.86985 -14.78651 -14.60154 -14.32037 -13.89942 -13.73453 -13.63893 -13.50462 -13.26570 -13.18789 -12.88414 -12.79695 -12.77810 -12.48564 -12.28055 -12.22882 -12.05456 -11.93977 -11.84088 -11.72563 -11.68221 -11.58237 -11.56170 -11.26836 -11.13370 -10.98637 -10.65729 -9.90427 -9.47182 -9.36203 -8.06868 -5.42140 1.32124 1.34400 1.40464 1.48058 1.61829 1.79463 1.96855 2.45931 2.98284 3.23235 3.34439 3.57529 3.64240 3.78843 3.83452 3.89136 3.92244 4.04061 4.12526 4.16754 4.21873 4.22965 4.27491 4.45215 4.46155 4.55036 4.60542 4.63280 4.66667 4.70012 4.76570 4.83446 4.87171 4.89766 4.98344 4.99790 5.02914 5.08747 5.15333 5.22150 5.26297 5.29010 5.34101 5.44237 5.49434 5.56704 5.69560 5.76739 6.03114 6.17058 6.47936 6.57802 7.02641 7.25844 7.76905 8.01211 9.15152 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.010988 B = 0.002857 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.685139 B = 9797.108256 C =11886.708509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.237 4.237 3 C 0.165 3.835 4 O -0.391 6.391 5 C 0.072 3.928 6 H 0.123 0.877 7 C -0.170 4.170 8 C 0.501 3.499 9 O -0.558 6.558 10 N -0.599 5.599 11 C 0.092 3.908 12 C -0.134 4.134 13 C -0.111 4.111 14 C -0.104 4.104 15 H 0.079 0.921 16 C -0.143 4.143 17 C 0.157 3.843 18 H 0.083 0.917 19 C -0.089 4.089 20 C -0.121 4.121 21 C 0.160 3.840 22 N -0.756 5.756 23 C -0.246 4.246 24 H 0.046 0.954 25 C -0.067 4.067 26 N -0.985 5.985 27 Si 0.966 3.034 28 H -0.274 1.274 29 H -0.290 1.290 30 H -0.248 1.248 31 H 0.249 0.751 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.044 0.956 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.103 0.897 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.032 0.968 44 H 0.061 0.939 45 H 0.057 0.943 46 H 0.056 0.944 47 H 0.058 0.942 48 H 0.072 0.928 49 H 0.067 0.933 50 H 0.008 0.992 51 H 0.009 0.991 52 H 0.369 0.631 53 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.811 -16.386 -33.699 39.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.237 4.237 3 C 0.091 3.909 4 O -0.311 6.311 5 C 0.011 3.989 6 H 0.141 0.859 7 C -0.227 4.227 8 C 0.289 3.711 9 O -0.436 6.436 10 N -0.333 5.333 11 C -0.029 4.029 12 C -0.172 4.172 13 C -0.149 4.149 14 C -0.123 4.123 15 H 0.098 0.902 16 C -0.201 4.201 17 C 0.054 3.946 18 H 0.101 0.899 19 C -0.128 4.128 20 C -0.159 4.159 21 C 0.033 3.967 22 N -0.403 5.403 23 C -0.377 4.377 24 H 0.064 0.936 25 C -0.258 4.258 26 N -0.635 5.635 27 Si 0.791 3.209 28 H -0.200 1.200 29 H -0.216 1.216 30 H -0.173 1.173 31 H 0.265 0.735 32 H 0.122 0.878 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.063 0.937 36 H 0.120 0.880 37 H 0.108 0.892 38 H 0.129 0.871 39 H 0.122 0.878 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.051 0.949 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.077 0.923 48 H 0.091 0.909 49 H 0.086 0.914 50 H 0.026 0.974 51 H 0.027 0.973 52 H 0.202 0.798 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 13.060 -15.915 -33.187 39.054 hybrid contribution -0.162 0.283 1.102 1.149 sum 12.899 -15.632 -32.085 37.950 Atomic orbital electron populations 1.25875 0.97040 0.97766 0.98126 1.23248 0.95274 1.02695 1.02519 1.19479 0.84226 0.92501 0.94742 1.88107 1.20643 1.58218 1.64095 1.22146 0.82062 1.02337 0.92307 0.85913 1.22354 1.03205 0.98365 0.98762 1.21026 0.82289 0.78691 0.89120 1.90842 1.52767 1.44124 1.55897 1.48124 1.07765 1.65368 1.12072 1.22289 0.88155 0.98372 0.94110 1.21979 0.98173 0.99877 0.97176 1.21546 0.96580 1.01565 0.95186 1.21575 0.95251 0.94772 1.00747 0.90244 1.21842 1.00656 0.96926 1.00632 1.21264 0.94209 0.97869 0.81215 0.89905 1.21839 0.96834 1.01352 0.92738 1.21843 0.97559 1.00119 0.96395 1.20652 0.96501 0.95917 0.83591 1.42690 1.16674 1.70121 1.10768 1.19050 0.96685 1.28338 0.93596 0.93582 1.25655 1.02948 1.00792 0.96396 1.69912 1.38175 1.47469 1.07986 0.85255 0.79608 0.77743 0.78252 1.19968 1.21633 1.17270 0.73502 0.87774 0.88804 0.88824 0.93655 0.87982 0.89196 0.87131 0.87828 0.91593 0.90691 0.90903 0.94925 0.91980 0.92440 0.92506 0.92310 0.90912 0.91426 0.97373 0.97260 0.79779 0.93097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 19.25 74.32 1.43 -1.61 16 2 C -0.24 -4.81 13.73 31.13 0.43 -4.38 16 3 C 0.17 2.48 6.22 70.18 0.44 2.92 16 4 O -0.39 -8.99 9.53 -130.43 -1.24 -10.23 16 5 C 0.07 1.12 2.28 29.85 0.07 1.18 16 6 H 0.12 0.86 6.98 -2.39 -0.02 0.85 16 7 C -0.17 -1.76 9.18 71.98 0.66 -1.10 16 8 C 0.50 11.85 6.92 87.66 0.61 12.46 16 9 O -0.56 -20.00 11.98 15.51 0.19 -19.82 16 10 N -0.60 -10.41 2.42 -795.03 -1.93 -12.33 16 11 C 0.09 0.65 5.75 86.36 0.50 1.15 16 12 C -0.13 -0.88 5.74 30.67 0.18 -0.70 16 13 C -0.11 -1.17 5.42 30.63 0.17 -1.01 16 14 C -0.10 -1.88 2.31 -10.71 -0.02 -1.91 16 15 H 0.08 1.57 6.67 -2.39 -0.02 1.55 16 16 C -0.14 -3.03 8.21 71.98 0.59 -2.44 16 17 C 0.16 3.37 2.71 44.97 0.12 3.49 16 18 H 0.08 1.61 8.14 -2.39 -0.02 1.60 16 19 C -0.09 -2.81 2.65 30.59 0.08 -2.73 16 20 C -0.12 -4.11 5.11 30.60 0.16 -3.96 16 21 C 0.16 7.34 6.26 86.38 0.54 7.88 16 22 N -0.76 -39.83 5.41 -343.45 -1.86 -41.69 16 23 C -0.25 -15.54 10.47 84.03 0.88 -14.66 16 24 H 0.05 3.22 8.06 -2.91 -0.02 3.20 16 25 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 26 N -0.99 -66.66 13.97 21.65 0.30 -66.36 16 27 Si 0.97 47.56 27.74 68.60 1.90 49.46 16 28 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 29 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 30 H -0.25 -10.95 6.52 99.48 0.65 -10.30 16 31 H 0.25 2.44 7.80 -4.41 -0.03 2.40 16 32 H 0.10 0.86 7.79 -2.39 -0.02 0.84 16 33 H 0.09 0.96 8.08 -2.39 -0.02 0.94 16 34 H 0.09 0.57 7.79 -2.39 -0.02 0.55 16 35 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.10 0.50 5.98 -2.39 -0.01 0.48 16 37 H 0.09 0.38 8.14 -2.39 -0.02 0.37 16 38 H 0.11 0.24 4.23 -2.39 -0.01 0.23 16 39 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 40 H 0.07 0.56 6.34 -2.38 -0.02 0.55 16 41 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.03 0.90 6.34 -2.38 -0.02 0.88 16 44 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.06 1.14 5.97 -2.38 -0.01 1.13 16 46 H 0.06 2.10 6.45 -2.39 -0.02 2.08 16 47 H 0.06 2.12 5.22 -2.39 -0.01 2.11 16 48 H 0.07 2.30 6.35 -2.39 -0.02 2.28 16 49 H 0.07 2.15 8.14 -2.38 -0.02 2.14 16 50 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 51 H 0.01 0.45 8.14 -2.39 -0.02 0.44 16 52 H 0.37 17.86 5.53 -92.71 -0.51 17.35 16 53 H 0.26 16.55 8.31 -92.71 -0.77 15.77 16 Total: -1.00 -89.66 404.83 4.97 -84.69 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: 0.33 Total: 25.42 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: 7.28 Total: -9.14 kcal Atomic # 7 Polarization: -116.90 SS G_CDS: -3.48 Total: -120.38 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -1.06 Total: -30.05 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 1.90 Total: 49.46 kcal Total: -89.66 4.97 -84.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264572715.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.709 kcal (2) G-P(sol) polarization free energy of solvation -89.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds