Wall clock time and date at job start Tue Mar 31 2020 20:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.49515 * 2 1 4 4 C 1.53037 * 109.49753 * 239.93143 * 2 1 3 5 5 C 1.53033 * 109.54231 * 301.38320 * 4 2 1 6 6 C 1.53196 * 109.31175 * 298.63529 * 5 4 2 7 7 N 1.46920 * 108.89240 * 54.56402 * 6 5 4 8 8 C 1.34775 * 120.63072 * 126.46122 * 7 6 5 9 9 O 1.21740 * 120.00019 * 196.75827 * 8 7 6 10 10 C 1.41794 * 120.00075 * 16.75575 * 8 7 6 11 11 C 1.33458 * 118.78691 * 202.60592 * 10 8 7 12 12 O 1.34350 * 123.08038 * 180.11241 * 11 10 8 13 13 C 1.45352 * 117.54439 * 344.22179 * 12 11 10 14 14 C 1.53479 * 108.26601 * 47.22230 * 13 12 11 15 15 C 1.50417 * 118.78896 * 22.87365 * 10 8 7 16 16 C 1.46964 * 118.71554 * 306.63796 * 7 6 5 17 17 H 1.08996 * 109.46954 * 293.57289 * 16 7 6 18 18 C 1.53002 * 109.71146 * 173.28418 * 16 7 6 19 19 C 1.52994 * 109.47129 * 177.30695 * 18 16 7 20 20 C 1.52996 * 109.47200 * 185.17008 * 19 18 16 21 21 N 1.46503 * 109.47080 * 180.02562 * 20 19 18 22 22 C 1.36945 * 120.00086 * 180.02562 * 21 20 19 23 23 H 1.08000 * 119.99594 * 359.97438 * 22 21 20 24 24 C 1.38807 * 119.99863 * 180.02562 * 22 21 20 25 25 N 1.31621 * 120.00313 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99708 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.47336 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.46910 * 120.00113 * 26 24 22 29 29 H 1.48492 * 109.47325 * 240.00045 * 26 24 22 30 30 H 1.09007 * 109.47118 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47592 * 300.06293 * 1 2 3 32 32 H 1.08997 * 109.46875 * 60.07090 * 1 2 3 33 33 H 1.09003 * 109.45811 * 181.35813 * 4 2 1 34 34 H 1.08995 * 109.44983 * 61.40183 * 4 2 1 35 35 H 1.09005 * 109.49802 * 178.68529 * 5 4 2 36 36 H 1.08995 * 109.50058 * 58.58757 * 5 4 2 37 37 H 1.09005 * 109.58442 * 174.42328 * 6 5 4 38 38 H 1.09005 * 109.58674 * 294.70228 * 6 5 4 39 39 H 1.07994 * 118.45836 * 0.39034 * 11 10 8 40 40 H 1.09007 * 109.70794 * 287.52787 * 13 12 11 41 41 H 1.09000 * 109.74374 * 166.93565 * 13 12 11 42 42 H 1.09006 * 109.70815 * 177.60274 * 14 13 12 43 43 H 1.09000 * 109.70425 * 56.99518 * 14 13 12 44 44 H 1.09000 * 109.45419 * 282.36298 * 15 10 8 45 45 H 1.09001 * 109.45266 * 42.32067 * 15 10 8 46 46 H 1.09000 * 109.47227 * 297.31338 * 18 16 7 47 47 H 1.09002 * 109.46606 * 57.31481 * 18 16 7 48 48 H 1.08997 * 109.47545 * 305.17818 * 19 18 16 49 49 H 1.09008 * 109.46585 * 65.17549 * 19 18 16 50 50 H 1.09003 * 109.47534 * 300.00107 * 20 19 18 51 51 H 1.09000 * 109.47008 * 60.00400 * 20 19 18 52 52 H 0.97003 * 120.00057 * 0.02562 * 21 20 19 53 53 H 0.97001 * 119.99510 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7228 -1.2485 5 6 1.5037 -2.1557 -1.2661 6 6 2.0153 -2.9038 -0.0311 7 7 1.6556 -2.1395 1.1710 8 6 0.9812 -2.7246 2.1805 9 8 0.4252 -2.0392 3.0191 10 6 0.9190 -4.1386 2.2659 11 6 -0.0800 -4.6978 2.9518 12 8 -0.2210 -6.0267 3.0900 13 6 0.5371 -6.8802 2.1902 14 6 1.9860 -6.3752 2.1548 15 6 1.9849 -4.9530 1.5852 16 6 2.0420 -0.7237 1.2494 17 1 3.1281 -0.6456 1.2977 18 6 1.4262 -0.0891 2.4981 19 6 1.8861 1.3657 2.6104 20 6 1.3762 1.9618 3.9241 21 7 1.8161 3.3551 4.0313 22 6 1.4771 4.0974 5.1311 23 1 0.8851 3.6558 5.9190 24 6 1.8934 5.4177 5.2324 25 7 2.6137 5.9563 4.2714 26 14 1.4304 6.4305 6.7321 27 1 0.6229 5.5992 7.6608 28 1 2.6641 6.8861 7.4219 29 1 0.6366 7.6110 6.3064 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5148 0.8893 32 1 -0.3633 0.5127 -0.8906 33 1 3.1306 -0.7436 -1.2357 34 1 1.6982 -0.1956 -2.1388 35 1 1.8488 -2.6625 -2.1674 36 1 0.4140 -2.1359 -1.2540 37 1 1.5572 -3.8919 0.0134 38 1 3.0991 -3.0058 -0.0885 39 1 -0.8118 -4.0518 3.4138 40 1 0.1070 -6.8334 1.1897 41 1 0.5150 -7.9082 2.5519 42 1 2.5865 -7.0255 1.5186 43 1 2.3970 -6.3666 3.1643 44 1 1.7845 -4.9908 0.5145 45 1 2.9581 -4.4928 1.7565 46 1 0.3392 -0.1220 2.4239 47 1 1.7470 -0.6408 3.3818 48 1 2.9752 1.4050 2.5921 49 1 1.4877 1.9384 1.7728 50 1 0.2871 1.9226 3.9424 51 1 1.7746 1.3891 4.7616 52 1 2.3475 3.7518 3.3234 53 1 2.9049 6.8788 4.3425 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316709916.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:33 Heat of formation + Delta-G solvation = -49.972777 kcal Electronic energy + Delta-G solvation = -30716.035756 eV Core-core repulsion = 26781.362567 eV Total energy + Delta-G solvation = -3934.673189 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.23061 -40.70068 -38.76603 -37.37103 -36.07543 -34.76516 -33.97820 -33.14413 -32.40006 -31.04655 -28.43473 -27.59258 -26.59335 -26.03307 -24.91777 -24.66641 -22.97598 -22.06458 -21.56069 -20.13138 -19.43325 -19.14785 -18.07436 -17.49077 -16.98601 -16.89986 -16.65389 -16.54294 -16.16674 -15.73557 -15.55604 -15.28674 -15.20821 -15.06978 -14.78342 -14.64634 -14.19157 -14.11154 -13.98878 -13.70037 -13.49697 -13.37467 -13.19844 -12.90878 -12.77755 -12.67191 -12.48365 -12.22093 -12.16055 -12.08634 -11.99643 -11.91293 -11.77472 -11.61338 -11.56901 -11.34255 -11.23660 -10.99201 -10.89532 -10.09415 -9.55589 -9.26075 -9.05569 -7.99203 -5.29148 0.45567 1.43665 1.45725 1.56402 2.07041 2.30968 2.37327 2.53185 3.33366 3.56620 3.73823 3.78179 3.80867 3.89534 3.98174 3.99813 4.14577 4.17486 4.23203 4.23819 4.26580 4.31808 4.38721 4.49747 4.58246 4.66022 4.66444 4.69765 4.72592 4.75662 4.82931 4.85641 4.89907 4.97966 5.03139 5.08576 5.09094 5.16010 5.16938 5.22190 5.25263 5.27135 5.30165 5.32924 5.43240 5.46440 5.51153 5.60653 5.83529 6.23517 6.25683 6.64090 7.28911 7.32977 8.03069 8.30025 9.24754 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015040 B = 0.002567 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.308402 B =10905.483017 C =12235.208042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.104 4.104 3 H 0.072 0.928 4 C -0.112 4.112 5 C -0.134 4.134 6 C 0.080 3.920 7 N -0.604 5.604 8 C 0.562 3.438 9 O -0.584 6.584 10 C -0.323 4.323 11 C 0.156 3.844 12 O -0.325 6.325 13 C 0.045 3.955 14 C -0.156 4.156 15 C -0.078 4.078 16 C 0.158 3.842 17 H 0.072 0.928 18 C -0.085 4.085 19 C -0.114 4.114 20 C 0.158 3.842 21 N -0.746 5.746 22 C -0.251 4.251 23 H 0.070 0.930 24 C -0.076 4.076 25 N -0.969 5.969 26 Si 0.979 3.021 27 H -0.269 1.269 28 H -0.288 1.288 29 H -0.288 1.288 30 H 0.054 0.946 31 H 0.035 0.965 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.100 0.900 36 H 0.060 0.940 37 H 0.127 0.873 38 H 0.081 0.919 39 H 0.160 0.840 40 H 0.090 0.910 41 H 0.128 0.872 42 H 0.117 0.883 43 H 0.062 0.938 44 H 0.115 0.885 45 H 0.077 0.923 46 H 0.069 0.931 47 H 0.051 0.949 48 H 0.057 0.943 49 H 0.061 0.939 50 H 0.008 0.992 51 H 0.008 0.992 52 H 0.375 0.625 53 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.765 -32.548 -16.621 36.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.123 4.123 3 H 0.091 0.909 4 C -0.149 4.149 5 C -0.171 4.171 6 C -0.040 4.040 7 N -0.337 5.337 8 C 0.356 3.644 9 O -0.467 6.467 10 C -0.327 4.327 11 C 0.088 3.912 12 O -0.236 6.236 13 C -0.028 4.028 14 C -0.193 4.193 15 C -0.114 4.114 16 C 0.055 3.945 17 H 0.090 0.910 18 C -0.123 4.123 19 C -0.153 4.153 20 C 0.031 3.969 21 N -0.389 5.389 22 C -0.383 4.383 23 H 0.088 0.912 24 C -0.268 4.268 25 N -0.620 5.620 26 Si 0.807 3.193 27 H -0.194 1.194 28 H -0.215 1.215 29 H -0.215 1.215 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.118 0.882 36 H 0.079 0.921 37 H 0.144 0.856 38 H 0.099 0.901 39 H 0.177 0.823 40 H 0.108 0.892 41 H 0.146 0.854 42 H 0.135 0.865 43 H 0.081 0.919 44 H 0.132 0.868 45 H 0.096 0.904 46 H 0.087 0.913 47 H 0.070 0.930 48 H 0.075 0.925 49 H 0.080 0.920 50 H 0.026 0.974 51 H 0.026 0.974 52 H 0.207 0.793 53 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.240 -32.342 -15.905 36.062 hybrid contribution 0.117 1.533 0.808 1.737 sum -1.123 -30.808 -15.097 34.327 Atomic orbital electron populations 1.21786 0.95432 1.01389 1.00918 1.21519 0.96221 0.99552 0.95001 0.90936 1.21541 1.00882 0.96103 0.96397 1.21987 1.01146 0.95590 0.98425 1.22847 1.01565 0.96950 0.82643 1.47929 1.56765 1.10422 1.18554 1.17145 0.77862 0.88526 0.80897 1.90896 1.46489 1.65779 1.43579 1.20159 1.03692 0.93957 1.14922 1.22758 0.94599 0.83666 0.90160 1.86251 1.65576 1.14613 1.57149 1.23902 0.90828 0.93954 0.94102 1.22268 0.97019 0.97036 1.03013 1.20962 0.96294 0.93808 1.00322 1.21180 0.98029 0.80389 0.94926 0.90962 1.21781 1.01284 0.92407 0.96813 1.21723 1.00290 0.96808 0.96451 1.20675 0.95745 0.84347 0.96103 1.42606 1.64152 1.09169 1.22952 1.19679 1.26637 0.93872 0.98122 0.91226 1.25640 1.01224 0.98282 1.01665 1.69832 1.42955 1.14050 1.35117 0.85003 0.77300 0.78347 0.78677 1.19360 1.21461 1.21470 0.92672 0.94597 0.92156 0.91064 0.91064 0.88166 0.92091 0.85581 0.90108 0.82259 0.89167 0.85364 0.86520 0.91911 0.86781 0.90415 0.91295 0.93039 0.92457 0.92016 0.97357 0.97434 0.79326 0.93769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 8.21 71.98 0.59 -2.77 16 2 C -0.10 -2.31 2.37 -10.72 -0.03 -2.34 16 3 H 0.07 1.81 6.94 -2.39 -0.02 1.79 16 4 C -0.11 -1.69 5.43 30.62 0.17 -1.52 16 5 C -0.13 -1.50 5.74 30.67 0.18 -1.32 16 6 C 0.08 0.95 4.78 86.36 0.41 1.36 16 7 N -0.60 -12.74 2.41 -805.26 -1.94 -14.68 16 8 C 0.56 14.38 6.99 85.12 0.59 14.97 16 9 O -0.58 -20.28 11.82 -4.47 -0.05 -20.33 16 10 C -0.32 -6.01 5.24 -20.16 -0.11 -6.12 16 11 C 0.16 3.00 10.43 66.74 0.70 3.70 16 12 O -0.32 -5.17 10.47 -76.19 -0.80 -5.96 16 13 C 0.05 0.32 7.15 72.14 0.52 0.84 16 14 C -0.16 -1.07 6.23 30.82 0.19 -0.87 16 15 C -0.08 -0.79 4.12 29.83 0.12 -0.67 16 16 C 0.16 4.01 2.67 44.97 0.12 4.13 16 17 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 18 C -0.08 -2.87 2.73 30.59 0.08 -2.78 16 19 C -0.11 -4.37 4.91 30.59 0.15 -4.21 16 20 C 0.16 7.59 6.26 86.38 0.54 8.13 16 21 N -0.75 -42.68 5.60 -343.45 -1.92 -44.61 16 22 C -0.25 -15.45 9.99 84.03 0.84 -14.61 16 23 H 0.07 4.18 7.83 -2.91 -0.02 4.16 16 24 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 25 N -0.97 -62.22 13.06 21.65 0.28 -61.94 16 26 Si 0.98 48.80 29.55 68.60 2.03 50.83 16 27 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 28 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 29 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 30 H 0.05 1.30 5.98 -2.38 -0.01 1.29 16 31 H 0.03 1.07 6.30 -2.39 -0.02 1.05 16 32 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 36 H 0.06 0.83 6.34 -2.39 -0.02 0.81 16 37 H 0.13 1.00 3.56 -2.38 -0.01 0.99 16 38 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 39 H 0.16 3.48 7.41 -2.91 -0.02 3.45 16 40 H 0.09 0.36 8.14 -2.38 -0.02 0.34 16 41 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 42 H 0.12 0.13 8.14 -2.38 -0.02 0.11 16 43 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.11 0.56 5.16 -2.39 -0.01 0.55 16 45 H 0.08 0.89 7.83 -2.39 -0.02 0.87 16 46 H 0.07 2.58 4.94 -2.39 -0.01 2.56 16 47 H 0.05 1.97 6.63 -2.39 -0.02 1.96 16 48 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 49 H 0.06 2.32 6.92 -2.38 -0.02 2.30 16 50 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 51 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 52 H 0.37 22.17 7.67 -92.71 -0.71 21.46 16 53 H 0.25 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -78.51 390.65 3.33 -75.18 By element: Atomic # 1 Polarization: 29.60 SS G_CDS: 0.20 Total: 29.80 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: 5.54 Total: -8.28 kcal Atomic # 7 Polarization: -117.65 SS G_CDS: -3.58 Total: -121.23 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.85 Total: -26.29 kcal Atomic # 14 Polarization: 48.80 SS G_CDS: 2.03 Total: 50.83 kcal Total: -78.51 3.33 -75.18 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316709916.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.209 kcal (2) G-P(sol) polarization free energy of solvation -78.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds