Wall clock time and date at job start Tue Mar 31 2020 20:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.49463 * 2 1 4 4 C 1.52764 * 109.59042 * 240.04688 * 2 1 3 5 5 N 1.46932 * 109.00630 * 185.53359 * 4 2 1 6 6 C 1.34777 * 120.62900 * 233.58516 * 5 4 2 7 7 O 1.21352 * 119.99519 * 174.67333 * 6 5 4 8 8 C 1.49449 * 120.00345 * 354.94394 * 6 5 4 9 9 O 1.21356 * 119.99688 * 85.14499 * 8 6 5 10 10 N 1.34778 * 120.00280 * 265.15020 * 8 6 5 11 11 C 1.46922 * 120.62781 * 4.77871 * 10 8 6 12 12 C 1.53626 * 108.54166 * 126.37067 * 11 10 8 13 13 C 1.53043 * 109.24245 * 54.85334 * 12 11 10 14 14 C 1.50693 * 109.46409 * 178.48784 * 13 12 11 15 15 H 1.08006 * 120.00069 * 120.06389 * 14 13 12 16 16 C 1.37875 * 120.00382 * 300.07371 * 14 13 12 17 17 N 1.31518 * 119.99996 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00375 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47059 * 59.99813 * 18 16 14 20 20 H 1.48503 * 109.47341 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47196 * 300.00004 * 18 16 14 22 22 C 1.53035 * 109.53942 * 298.51392 * 13 12 11 23 23 C 1.46921 * 120.63000 * 185.06102 * 10 8 6 24 24 C 1.46923 * 118.73485 * 53.31374 * 5 4 2 25 25 C 1.53191 * 108.77643 * 306.63704 * 24 5 4 26 26 C 1.52999 * 109.49885 * 174.58992 * 25 24 5 27 27 C 1.53006 * 109.50018 * 294.68859 * 25 24 5 28 28 C 1.53038 * 109.31073 * 54.64063 * 25 24 5 29 29 H 1.08994 * 109.47366 * 299.93545 * 1 2 3 30 30 H 1.09005 * 109.46956 * 59.93944 * 1 2 3 31 31 H 1.09004 * 109.47048 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.50869 * 65.65685 * 4 2 1 33 33 H 1.08995 * 109.43829 * 305.36976 * 4 2 1 34 34 H 1.09004 * 109.58832 * 246.20135 * 11 10 8 35 35 H 1.09000 * 109.58751 * 6.63496 * 11 10 8 36 36 H 1.09004 * 109.63616 * 294.86882 * 12 11 10 37 37 H 1.09002 * 109.45799 * 174.73856 * 12 11 10 38 38 H 1.09006 * 109.45600 * 58.53335 * 13 12 11 39 39 H 0.96999 * 120.00300 * 180.02562 * 17 16 14 40 40 H 1.08997 * 109.49810 * 301.40770 * 22 13 12 41 41 H 1.09002 * 109.52679 * 181.32671 * 22 13 12 42 42 H 1.09003 * 109.58899 * 353.37411 * 23 10 8 43 43 H 1.09004 * 109.58689 * 113.79192 * 23 10 8 44 44 H 1.08993 * 109.59263 * 66.42793 * 24 5 4 45 45 H 1.09003 * 109.58255 * 186.71018 * 24 5 4 46 46 H 1.08998 * 109.46910 * 60.00175 * 26 25 24 47 47 H 1.09003 * 109.46938 * 179.97438 * 26 25 24 48 48 H 1.08995 * 109.47062 * 300.00018 * 26 25 24 49 49 H 1.08996 * 109.46748 * 59.99611 * 27 25 24 50 50 H 1.08992 * 109.46966 * 179.97438 * 27 25 24 51 51 H 1.08994 * 109.46823 * 299.99932 * 27 25 24 52 52 H 1.08999 * 109.46337 * 58.65376 * 28 25 24 53 53 H 1.09000 * 109.46083 * 178.61870 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0422 -0.7186 -1.2470 5 7 3.5053 -0.8283 -1.1690 6 6 4.2819 -0.3844 -2.1772 7 8 5.4898 -0.3915 -2.0609 8 6 3.6553 0.1221 -3.4359 9 8 3.2914 1.2775 -3.5102 10 7 3.4943 -0.7041 -4.4884 11 6 3.8329 -2.1296 -4.3797 12 6 2.6132 -2.9561 -4.8147 13 6 2.1810 -2.5182 -6.2160 14 6 1.0075 -3.3514 -6.6628 15 1 0.0681 -2.8759 -6.9036 16 6 1.1330 -4.7207 -6.7642 17 7 2.2769 -5.2997 -6.4714 18 14 -0.3219 -5.7535 -7.3174 19 1 -0.7408 -5.3300 -8.6777 20 1 0.0691 -7.1859 -7.3429 21 1 -1.4507 -5.5658 -6.3709 22 6 1.7776 -1.0422 -6.1893 23 6 2.9826 -0.1952 -5.7682 24 6 4.1059 -1.4255 0.0315 25 6 3.5708 -0.6939 1.2666 26 6 4.0798 -1.3879 2.5316 27 6 4.0545 0.7576 1.2498 28 6 2.0408 -0.7228 1.2485 29 1 -0.3634 0.5128 0.8905 30 1 -0.3633 0.5148 -0.8895 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7652 -0.1497 -2.1345 33 1 1.6033 -1.7150 -1.2974 34 1 4.6800 -2.3545 -5.0277 35 1 4.0872 -2.3670 -3.3467 36 1 1.7933 -2.7956 -4.1145 37 1 2.8775 -4.0135 -4.8293 38 1 3.0094 -2.6558 -6.9110 39 1 2.3654 -6.2630 -6.5431 40 1 0.9657 -0.8997 -5.4762 41 1 1.4475 -0.7367 -7.1822 42 1 2.6758 0.8443 -5.6517 43 1 3.7619 -0.2654 -6.5272 44 1 3.8387 -2.4807 0.0876 45 1 5.1903 -1.3251 -0.0139 46 1 5.1695 -1.3697 2.5425 47 1 3.6991 -0.8668 3.4100 48 1 3.7335 -2.4213 2.5433 49 1 3.6903 1.2515 0.3491 50 1 3.6732 1.2777 2.1285 51 1 5.1442 0.7775 1.2598 52 1 1.6972 -1.7571 1.2355 53 1 1.6577 -0.2242 2.1389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324980706.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:35 Heat of formation + Delta-G solvation = -104.131249 kcal Electronic energy + Delta-G solvation = -31791.767923 eV Core-core repulsion = 27854.746246 eV Total energy + Delta-G solvation = -3937.021677 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.32474 -40.71445 -39.25399 -38.49175 -35.65545 -35.41955 -34.67269 -33.14061 -31.84739 -28.93303 -28.27440 -27.95025 -27.65678 -27.14280 -25.35692 -24.21320 -23.38420 -21.85282 -21.24563 -20.07049 -19.49407 -18.94589 -18.31572 -18.08423 -17.66018 -16.53056 -16.35998 -16.14909 -15.99933 -15.93453 -15.44825 -15.14161 -14.94612 -14.72916 -14.62196 -14.42499 -14.40900 -14.06210 -14.00760 -13.35309 -13.29421 -13.22263 -13.08744 -12.98707 -12.88997 -12.78712 -12.63518 -12.54223 -12.48679 -12.34409 -12.17101 -11.96759 -11.87706 -11.84738 -11.49646 -11.33177 -11.20494 -11.04023 -10.92644 -10.67956 -10.39534 -9.85209 -9.80850 -8.06266 -6.19344 0.91212 0.94410 1.42714 1.45273 1.46676 1.53227 2.19248 2.46171 2.98318 3.21059 3.55024 3.70465 3.77180 3.82780 3.90532 4.11889 4.16551 4.21539 4.26527 4.35841 4.37820 4.49154 4.50689 4.54631 4.57435 4.60260 4.69669 4.74076 4.77747 4.84480 4.85255 4.89584 4.95384 5.04359 5.09215 5.09538 5.13361 5.15259 5.18530 5.23262 5.31159 5.33708 5.38766 5.42412 5.44682 5.52150 5.64166 5.92996 5.97358 6.06251 6.11418 6.38934 6.58377 6.63517 6.90195 7.48919 8.97270 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013378 B = 0.003527 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.432549 B = 7936.760521 C = 8561.055579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 H 0.067 0.933 4 C 0.105 3.895 5 N -0.582 5.582 6 C 0.520 3.480 7 O -0.548 6.548 8 C 0.512 3.488 9 O -0.554 6.554 10 N -0.579 5.579 11 C 0.115 3.885 12 C -0.106 4.106 13 C 0.045 3.955 14 C -0.531 4.531 15 H 0.052 0.948 16 C 0.020 3.980 17 N -0.913 5.913 18 Si 0.947 3.053 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.272 1.272 22 C -0.110 4.110 23 C 0.113 3.887 24 C 0.112 3.888 25 C -0.075 4.075 26 C -0.133 4.133 27 C -0.138 4.138 28 C -0.098 4.098 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.038 0.962 37 H 0.081 0.919 38 H 0.003 0.997 39 H 0.261 0.739 40 H 0.051 0.949 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.077 0.923 44 H 0.091 0.909 45 H 0.080 0.920 46 H 0.056 0.944 47 H 0.072 0.928 48 H 0.068 0.932 49 H 0.034 0.966 50 H 0.072 0.928 51 H 0.045 0.955 52 H 0.078 0.922 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.777 6.911 17.839 19.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 H 0.086 0.914 4 C -0.017 4.017 5 N -0.315 5.315 6 C 0.303 3.697 7 O -0.426 6.426 8 C 0.295 3.705 9 O -0.433 6.433 10 N -0.312 5.312 11 C -0.007 4.007 12 C -0.144 4.144 13 C 0.027 3.973 14 C -0.569 4.569 15 H 0.070 0.930 16 C -0.179 4.179 17 N -0.552 5.552 18 Si 0.773 3.227 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.148 4.148 23 C -0.009 4.009 24 C -0.009 4.009 25 C -0.075 4.075 26 C -0.191 4.191 27 C -0.195 4.195 28 C -0.136 4.136 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.057 0.943 37 H 0.099 0.901 38 H 0.021 0.979 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.108 0.892 43 H 0.095 0.905 44 H 0.109 0.891 45 H 0.099 0.901 46 H 0.075 0.925 47 H 0.091 0.909 48 H 0.087 0.913 49 H 0.054 0.946 50 H 0.091 0.909 51 H 0.064 0.936 52 H 0.096 0.904 53 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.248 7.313 17.847 19.289 hybrid contribution -0.409 -0.638 -0.909 1.184 sum -0.657 6.675 16.938 18.218 Atomic orbital electron populations 1.21737 0.92803 1.02846 1.02512 1.21426 0.97076 0.99661 0.93992 0.91435 1.21990 0.77649 1.02253 0.99814 1.48137 1.07756 1.58033 1.17550 1.20169 0.87068 0.77535 0.84923 1.90744 1.14368 1.55703 1.81777 1.20359 0.78819 0.86228 0.85144 1.90730 1.50999 1.18294 1.83259 1.48309 1.61234 1.09775 1.11857 1.22027 0.99204 0.78206 1.01242 1.21835 0.94187 1.00548 0.97876 1.18616 0.95139 0.90813 0.92773 1.21476 0.98333 0.92269 1.44866 0.92983 1.25613 0.97878 0.99065 0.95387 1.69941 1.25408 1.10438 1.49429 0.85783 0.80284 0.77677 0.78906 1.20098 1.21209 1.19745 1.21848 0.95969 0.96179 1.00836 1.21854 0.97057 0.98895 0.83072 1.22060 0.99065 0.97451 0.82338 1.20918 0.96425 0.95578 0.94628 1.21758 1.01182 1.00798 0.95359 1.21855 1.00496 0.95701 1.01478 1.21671 0.93042 1.01567 0.97270 0.90625 0.93217 0.91589 0.91727 0.89380 0.91296 0.90781 0.94284 0.90054 0.97852 0.92975 0.93036 0.90970 0.89178 0.90482 0.89114 0.90117 0.92535 0.90879 0.91325 0.94646 0.90876 0.93560 0.90367 0.89569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.20 71.98 0.66 -1.52 16 2 C -0.10 -1.88 2.51 -10.86 -0.03 -1.91 16 3 H 0.07 1.44 6.33 -2.39 -0.02 1.42 16 4 C 0.11 2.52 5.58 86.22 0.48 3.00 16 5 N -0.58 -15.72 2.42 -821.31 -1.99 -17.70 16 6 C 0.52 17.98 5.49 87.27 0.48 18.46 16 7 O -0.55 -21.46 16.51 -3.25 -0.05 -21.51 16 8 C 0.51 18.99 5.61 87.27 0.49 19.48 16 9 O -0.55 -22.55 16.30 -3.26 -0.05 -22.61 16 10 N -0.58 -21.03 2.97 -819.63 -2.43 -23.46 16 11 C 0.12 4.24 6.35 86.51 0.55 4.79 16 12 C -0.11 -4.52 5.17 30.82 0.16 -4.36 16 13 C 0.05 2.07 2.06 -11.52 -0.02 2.05 16 14 C -0.53 -27.24 8.56 25.60 0.22 -27.02 16 15 H 0.05 2.64 7.74 -2.91 -0.02 2.62 16 16 C 0.02 1.02 5.30 84.65 0.45 1.47 16 17 N -0.91 -49.11 11.31 21.45 0.24 -48.87 16 18 Si 0.95 41.29 29.54 68.60 2.03 43.32 16 19 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 20 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 21 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 22 C -0.11 -4.22 5.30 30.67 0.16 -4.06 16 23 C 0.11 3.92 6.44 86.36 0.56 4.48 16 24 C 0.11 2.41 5.12 86.36 0.44 2.86 16 25 C -0.07 -1.22 0.77 -52.10 -0.04 -1.26 16 26 C -0.13 -1.57 8.48 71.98 0.61 -0.96 16 27 C -0.14 -2.64 7.99 71.98 0.58 -2.06 16 28 C -0.10 -1.39 4.00 30.62 0.12 -1.26 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 32 H 0.06 1.86 6.22 -2.39 -0.01 1.84 16 33 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 35 H 0.07 2.55 6.37 -2.39 -0.02 2.54 16 36 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 37 H 0.08 3.94 6.03 -2.39 -0.01 3.93 16 38 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 39 H 0.26 13.53 8.31 -92.71 -0.77 12.76 16 40 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 42 H 0.09 3.04 7.00 -2.39 -0.02 3.02 16 43 H 0.08 2.54 8.14 -2.38 -0.02 2.53 16 44 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.08 2.01 7.00 -2.39 -0.02 1.99 16 46 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.03 0.85 5.97 -2.39 -0.01 0.83 16 50 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 51 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 52 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 53 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -62.14 401.83 4.48 -57.65 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: 0.87 Total: 21.00 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: 5.87 Total: 12.17 kcal Atomic # 7 Polarization: -85.85 SS G_CDS: -4.17 Total: -90.02 kcal Atomic # 8 Polarization: -44.01 SS G_CDS: -0.11 Total: -44.12 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Total: -62.14 4.48 -57.65 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324980706.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.477 kcal (2) G-P(sol) polarization free energy of solvation -62.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds