Wall clock time and date at job start Tue Mar 31 2020 20:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.44684 * 2 1 4 4 C 1.54862 * 109.42724 * 240.07123 * 2 1 3 5 5 C 1.47093 * 110.32371 * 168.70702 * 4 2 1 6 6 C 1.52575 * 114.32799 * 62.79586 * 5 4 2 7 7 C 1.50878 * 109.35831 * 274.99289 * 6 5 4 8 8 H 1.08990 * 109.36995 * 331.81771 * 7 6 5 9 9 C 1.53005 * 109.36696 * 212.07237 * 7 6 5 10 10 C 1.54304 * 110.23668 * 91.79787 * 7 6 5 11 11 N 1.44578 * 109.45020 * 119.95303 * 2 1 3 12 12 C 1.34774 * 118.64430 * 30.71536 * 11 2 1 13 13 O 1.21351 * 119.99796 * 7.44739 * 12 11 2 14 14 C 1.49447 * 120.00024 * 187.44754 * 12 11 2 15 15 O 1.21348 * 119.99986 * 7.26113 * 14 12 11 16 16 N 1.34775 * 120.00163 * 186.99677 * 14 12 11 17 17 C 1.46929 * 120.63216 * 178.72695 * 16 14 12 18 18 C 1.52757 * 109.00330 * 233.57925 * 17 16 14 19 19 C 1.53041 * 109.38700 * 305.58247 * 18 17 16 20 20 C 1.50697 * 109.46325 * 181.25922 * 19 18 17 21 21 H 1.07998 * 120.00546 * 239.93252 * 20 19 18 22 22 C 1.37882 * 119.99567 * 59.93815 * 20 19 18 23 23 N 1.31513 * 119.99928 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99926 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46914 * 359.97438 * 24 22 20 26 26 H 1.48505 * 109.47131 * 119.99775 * 24 22 20 27 27 H 1.48500 * 109.47235 * 240.00002 * 24 22 20 28 28 C 1.53044 * 109.53274 * 61.24403 * 19 18 17 29 29 C 1.46921 * 120.62872 * 358.99602 * 16 14 12 30 30 H 1.08994 * 109.47091 * 284.63908 * 1 2 3 31 31 H 1.08999 * 109.46820 * 44.64089 * 1 2 3 32 32 H 1.09002 * 109.46714 * 164.63676 * 1 2 3 33 33 H 1.09007 * 109.33030 * 288.96313 * 4 2 1 34 34 H 1.09001 * 109.33194 * 48.44467 * 4 2 1 35 35 H 1.08997 * 108.51847 * 184.05114 * 5 4 2 36 36 H 1.09004 * 108.51359 * 301.54894 * 5 4 2 37 37 H 1.09004 * 109.48574 * 34.95485 * 6 5 4 38 38 H 1.08997 * 109.49210 * 155.00124 * 6 5 4 39 39 H 1.09001 * 109.46695 * 59.99634 * 9 7 6 40 40 H 1.08995 * 109.47147 * 179.97438 * 9 7 6 41 41 H 1.09001 * 109.46789 * 300.00482 * 9 7 6 42 42 H 1.08993 * 109.13645 * 199.01307 * 10 7 6 43 43 H 1.08999 * 108.95614 * 80.26484 * 10 7 6 44 44 H 1.09004 * 109.58424 * 353.40916 * 17 16 14 45 45 H 1.08991 * 109.58675 * 113.83804 * 17 16 14 46 46 H 1.09005 * 109.56484 * 185.54683 * 18 17 16 47 47 H 1.08997 * 109.36387 * 65.49648 * 18 17 16 48 48 H 1.08996 * 109.46182 * 301.22581 * 19 18 17 49 49 H 0.97005 * 119.99604 * 180.02562 * 23 22 20 50 50 H 1.09003 * 109.49840 * 178.68847 * 28 19 18 51 51 H 1.09000 * 109.50019 * 58.58940 * 28 19 18 52 52 H 1.09004 * 109.59032 * 246.16366 * 29 16 14 53 53 H 1.09000 * 109.59083 * 6.44580 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0451 -0.7287 -1.2657 5 6 3.4907 -0.5105 -1.4281 6 6 4.3427 -1.0741 -0.2948 7 6 4.4116 -0.0677 0.8272 8 1 4.3026 0.9369 0.4188 9 6 5.7647 -0.1850 1.5316 10 6 3.2809 -0.3249 1.8452 11 7 2.0115 -0.6807 1.1812 12 6 1.2678 -1.6773 1.7008 13 8 0.2891 -2.0778 1.1054 14 6 1.6484 -2.2893 3.0100 15 8 2.5453 -1.8048 3.6683 16 7 0.9919 -3.3761 3.4621 17 6 1.3729 -4.0055 4.7339 18 6 1.6335 -5.4916 4.4950 19 6 0.4103 -6.1204 3.8238 20 6 0.6534 -7.5930 3.6153 21 1 0.6357 -8.0074 2.6182 22 6 0.8983 -8.4112 4.6978 23 7 0.9202 -7.9064 5.9120 24 14 1.1990 -10.2366 4.4396 25 1 1.1210 -10.5510 2.9903 26 1 2.5462 -10.5938 4.9523 27 1 0.1683 -11.0164 5.1709 28 6 0.1665 -5.4475 2.4710 29 6 -0.1144 -3.9574 2.6897 30 1 -0.3633 0.2597 0.9942 31 1 -0.3633 0.7312 -0.7221 32 1 -0.3633 -0.9910 -0.2723 33 1 1.8499 -1.7970 -1.1716 34 1 1.5217 -0.3446 -2.1413 35 1 3.8078 -0.9734 -2.3625 36 1 3.6732 0.5619 -1.4978 37 1 3.8948 -1.9976 0.0721 38 1 5.3481 -1.2786 -0.6627 39 1 6.5644 0.0105 0.8172 40 1 5.8166 0.5417 2.3423 41 1 5.8774 -1.1907 1.9368 42 1 3.1278 0.5730 2.4436 43 1 3.5766 -1.1413 2.5040 44 1 2.2777 -3.5344 5.1181 45 1 0.5640 -3.8905 5.4552 46 1 1.8206 -5.9872 5.4477 47 1 2.5029 -5.6066 3.8478 48 1 -0.4638 -5.9833 4.4603 49 1 1.0929 -8.4820 6.6735 50 1 -0.6907 -5.9114 1.9831 51 1 1.0498 -5.5628 1.8428 52 1 -1.0472 -3.8385 3.2410 53 1 -0.1924 -3.4530 1.7266 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324990461.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:16 Heat of formation + Delta-G solvation = -59.936958 kcal Electronic energy + Delta-G solvation = -31777.119391 eV Core-core repulsion = 27842.014122 eV Total energy + Delta-G solvation = -3935.105269 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.50042 -40.53835 -39.06034 -38.52420 -35.76899 -35.33770 -34.66523 -32.94456 -31.91249 -31.16017 -28.43677 -27.41376 -27.21374 -26.04387 -24.62437 -24.11210 -23.14691 -22.06586 -21.18179 -20.80634 -19.86717 -18.53511 -18.18042 -17.61502 -17.31875 -17.03416 -16.51353 -16.50515 -16.05686 -15.69019 -15.39199 -15.21250 -15.04923 -14.82545 -14.68223 -14.47941 -14.16006 -13.89708 -13.69745 -13.63638 -13.44361 -13.22608 -13.09424 -13.04263 -12.86345 -12.78397 -12.60357 -12.47780 -12.39390 -12.17673 -11.95741 -11.78073 -11.63745 -11.48935 -11.46041 -11.38573 -11.17699 -10.86929 -10.81336 -10.44230 -9.86404 -9.60712 -9.57467 -8.09105 -6.23292 0.32767 1.29683 1.39277 1.41834 1.52535 2.09040 2.35118 2.42987 3.06520 3.16991 3.61790 3.80339 3.89629 4.01073 4.10398 4.12596 4.23705 4.30749 4.34829 4.38627 4.43134 4.56293 4.60577 4.62892 4.68812 4.69895 4.79434 4.82302 4.85079 4.90498 4.93926 4.95019 5.04357 5.13401 5.16037 5.17167 5.20481 5.25429 5.28110 5.33573 5.39486 5.40857 5.42810 5.45583 5.52305 5.61975 5.76520 5.94896 6.02553 6.08130 6.30320 6.36876 6.70019 6.86969 6.95585 7.44781 8.94477 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016323 B = 0.003112 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.928933 B = 8995.252928 C = 9298.032323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.138 3.862 3 H 0.109 0.891 4 C -0.124 4.124 5 C -0.116 4.116 6 C -0.114 4.114 7 C -0.095 4.095 8 H 0.091 0.909 9 C -0.142 4.142 10 C 0.079 3.921 11 N -0.560 5.560 12 C 0.506 3.494 13 O -0.511 6.511 14 C 0.491 3.509 15 O -0.542 6.542 16 N -0.567 5.567 17 C 0.115 3.885 18 C -0.110 4.110 19 C 0.043 3.957 20 C -0.533 4.533 21 H 0.050 0.950 22 C 0.015 3.985 23 N -0.915 5.915 24 Si 0.952 3.048 25 H -0.270 1.270 26 H -0.281 1.281 27 H -0.280 1.280 28 C -0.111 4.111 29 C 0.057 3.943 30 H 0.039 0.961 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.043 0.957 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.034 0.966 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.042 0.958 42 H 0.072 0.928 43 H 0.109 0.891 44 H 0.082 0.918 45 H 0.067 0.933 46 H 0.079 0.921 47 H 0.024 0.976 48 H 0.002 0.998 49 H 0.261 0.739 50 H 0.066 0.934 51 H 0.041 0.959 52 H 0.063 0.937 53 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.252 20.611 -13.516 25.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.036 3.964 3 H 0.127 0.873 4 C -0.162 4.162 5 C -0.154 4.154 6 C -0.152 4.152 7 C -0.114 4.114 8 H 0.109 0.891 9 C -0.200 4.200 10 C -0.042 4.042 11 N -0.291 5.291 12 C 0.290 3.710 13 O -0.390 6.390 14 C 0.275 3.725 15 O -0.423 6.423 16 N -0.298 5.298 17 C -0.007 4.007 18 C -0.148 4.148 19 C 0.024 3.976 20 C -0.571 4.571 21 H 0.068 0.932 22 C -0.184 4.184 23 N -0.554 5.554 24 Si 0.778 3.222 25 H -0.194 1.194 26 H -0.207 1.207 27 H -0.206 1.206 28 C -0.150 4.150 29 C -0.063 4.063 30 H 0.058 0.942 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.112 0.888 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.053 0.947 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.061 0.939 42 H 0.090 0.910 43 H 0.127 0.873 44 H 0.100 0.900 45 H 0.085 0.915 46 H 0.097 0.903 47 H 0.043 0.957 48 H 0.020 0.980 49 H 0.070 0.930 50 H 0.085 0.915 51 H 0.060 0.940 52 H 0.082 0.918 53 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 5.234 20.634 -13.319 25.110 hybrid contribution 0.060 -1.608 0.664 1.741 sum 5.294 19.025 -12.655 23.455 Atomic orbital electron populations 1.22285 0.93645 1.04041 1.01624 1.21494 0.95160 0.96524 0.83242 0.87335 1.21213 0.97033 1.00279 0.97664 1.20451 0.94242 1.02309 0.98360 1.21185 1.00456 0.97832 0.95729 1.21400 0.94232 1.00454 0.95269 0.89074 1.21812 0.95643 1.01644 1.00911 1.23180 0.81698 1.04088 0.95241 1.47833 1.21221 1.32182 1.27851 1.20037 0.83942 0.81387 0.85631 1.90265 1.28442 1.58874 1.61469 1.20482 0.82681 0.81671 0.87692 1.90514 1.30602 1.62420 1.58746 1.48247 1.33133 1.26249 1.22124 1.21696 1.00733 0.94051 0.84185 1.21684 0.98604 0.92166 1.02392 1.18650 0.93306 0.93481 0.92114 1.21587 1.48301 0.94288 0.92956 0.93183 1.25700 0.95088 1.02568 0.95038 1.69973 1.50363 1.36418 0.98667 0.85603 0.77664 0.80711 0.78251 1.19394 1.20694 1.20560 1.21832 1.00418 0.94286 0.98422 1.23357 0.87315 0.94929 1.00709 0.94216 0.90174 0.90524 0.93862 0.88786 0.91669 0.90264 0.94742 0.90729 0.90784 0.91918 0.93901 0.90972 0.87321 0.89954 0.91513 0.90289 0.95706 0.97982 0.92953 0.91550 0.94050 0.91831 0.82530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 7.85 71.98 0.57 -2.46 16 2 C 0.14 2.44 2.54 45.99 0.12 2.55 16 3 H 0.11 1.42 8.07 -2.39 -0.02 1.40 16 4 C -0.12 -2.01 5.01 29.39 0.15 -1.86 16 5 C -0.12 -1.60 5.15 28.62 0.15 -1.46 16 6 C -0.11 -1.97 5.02 29.76 0.15 -1.82 16 7 C -0.09 -1.50 2.54 -11.04 -0.03 -1.53 16 8 H 0.09 1.09 7.31 -2.39 -0.02 1.07 16 9 C -0.14 -2.16 8.88 71.98 0.64 -1.52 16 10 C 0.08 1.71 4.80 86.61 0.42 2.13 16 11 N -0.56 -13.02 2.20 -794.92 -1.75 -14.76 16 12 C 0.51 15.09 7.06 87.27 0.62 15.70 16 13 O -0.51 -15.79 9.58 -3.25 -0.03 -15.83 16 14 C 0.49 17.12 7.55 87.27 0.66 17.78 16 15 O -0.54 -19.61 12.50 -3.24 -0.04 -19.65 16 16 N -0.57 -21.36 2.98 -821.33 -2.45 -23.81 16 17 C 0.12 4.69 6.40 86.22 0.55 5.24 16 18 C -0.11 -5.28 5.14 30.53 0.16 -5.13 16 19 C 0.04 2.16 2.07 -11.51 -0.02 2.14 16 20 C -0.53 -29.56 8.56 25.60 0.22 -29.35 16 21 H 0.05 2.76 7.74 -2.91 -0.02 2.73 16 22 C 0.01 0.82 5.30 84.66 0.45 1.26 16 23 N -0.91 -52.30 11.30 21.45 0.24 -52.05 16 24 Si 0.95 43.78 29.54 68.60 2.03 45.80 16 25 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 26 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 27 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 28 C -0.11 -4.71 5.30 30.67 0.16 -4.55 16 29 C 0.06 2.10 6.22 86.36 0.54 2.64 16 30 H 0.04 0.87 7.81 -2.39 -0.02 0.85 16 31 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 1.81 5.92 -2.39 -0.01 1.79 16 33 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.09 1.17 8.11 -2.39 -0.02 1.15 16 35 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.08 0.80 7.36 -2.38 -0.02 0.78 16 37 H 0.03 0.80 7.49 -2.39 -0.02 0.79 16 38 H 0.07 1.14 7.74 -2.39 -0.02 1.12 16 39 H 0.07 0.89 8.09 -2.39 -0.02 0.87 16 40 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.11 3.05 4.42 -39.35 -0.17 2.88 16 44 H 0.08 3.26 7.01 -2.38 -0.02 3.24 16 45 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 46 H 0.08 4.23 6.03 -2.38 -0.01 4.22 16 47 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 49 H 0.26 14.20 8.31 -92.70 -0.77 13.43 16 50 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 51 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 52 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 53 H 0.16 5.45 3.81 -81.33 -0.31 5.14 16 Total: -1.00 -61.69 387.71 3.90 -57.79 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: 0.42 Total: 22.73 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 5.48 Total: -0.23 kcal Atomic # 7 Polarization: -86.67 SS G_CDS: -3.95 Total: -90.62 kcal Atomic # 8 Polarization: -35.41 SS G_CDS: -0.07 Total: -35.48 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -61.69 3.90 -57.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324990461.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.145 kcal (2) G-P(sol) polarization free energy of solvation -61.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds