Wall clock time and date at job start Tue Mar 31 2020 20:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 108.45967 * 2 1 4 4 C 1.52526 * 108.52232 * 242.28751 * 2 1 3 5 5 C 1.50131 * 105.41353 * 149.50976 * 4 2 1 6 6 C 1.54836 * 110.82036 * 97.68147 * 5 4 2 7 7 C 1.54899 * 110.14178 * 321.13549 * 6 5 4 8 8 H 1.08995 * 108.16275 * 80.35060 * 7 6 5 9 9 C 1.53000 * 108.00195 * 197.04669 * 7 6 5 10 10 N 1.43436 * 116.07904 * 318.63776 * 7 6 5 11 11 C 1.34782 * 120.53864 * 271.54753 * 10 7 6 12 12 O 1.21346 * 119.99335 * 6.61240 * 11 10 7 13 13 C 1.49442 * 119.99816 * 186.61972 * 11 10 7 14 14 O 1.21345 * 120.00527 * 7.16782 * 13 11 10 15 15 N 1.34781 * 119.99776 * 187.17462 * 13 11 10 16 16 C 1.46924 * 120.63323 * 178.48747 * 15 13 11 17 17 C 1.53191 * 108.77487 * 233.58702 * 16 15 13 18 18 C 1.53042 * 109.31315 * 305.36248 * 17 16 15 19 19 C 1.50701 * 109.45961 * 181.38693 * 18 17 16 20 20 H 1.07996 * 119.99904 * 359.97438 * 19 18 17 21 21 C 1.37876 * 119.99609 * 180.24783 * 19 18 17 22 22 N 1.31519 * 119.99867 * 179.72644 * 21 19 18 23 23 Si 1.86802 * 120.00306 * 359.72428 * 21 19 18 24 24 H 1.48503 * 109.47092 * 89.99813 * 23 21 19 25 25 H 1.48502 * 109.47373 * 209.99925 * 23 21 19 26 26 H 1.48496 * 109.47117 * 329.99907 * 23 21 19 27 27 C 1.53040 * 109.52515 * 61.37395 * 18 17 16 28 28 C 1.46927 * 120.62784 * 358.46301 * 15 13 11 29 29 C 1.46758 * 108.33904 * 117.72546 * 2 1 3 30 30 H 1.09004 * 109.47136 * 177.70843 * 1 2 3 31 31 H 1.08997 * 109.47347 * 297.71374 * 1 2 3 32 32 H 1.09008 * 109.47243 * 57.71209 * 1 2 3 33 33 H 1.09000 * 110.25092 * 30.53372 * 4 2 1 34 34 H 1.09004 * 110.25037 * 268.47699 * 4 2 1 35 35 H 1.09003 * 109.20775 * 337.33221 * 5 4 2 36 36 H 1.09010 * 109.20651 * 218.02874 * 5 4 2 37 37 H 1.08993 * 109.36287 * 200.92880 * 6 5 4 38 38 H 1.09010 * 109.35880 * 81.33849 * 6 5 4 39 39 H 1.08995 * 109.46907 * 171.92797 * 9 7 6 40 40 H 1.09004 * 109.46465 * 291.92342 * 9 7 6 41 41 H 1.08996 * 109.46942 * 51.92424 * 9 7 6 42 42 H 1.09004 * 109.58685 * 113.79840 * 16 15 13 43 43 H 1.09003 * 109.58442 * 353.36981 * 16 15 13 44 44 H 1.09000 * 109.49622 * 185.41419 * 17 16 15 45 45 H 1.09000 * 109.50344 * 65.31540 * 17 16 15 46 46 H 1.09005 * 109.46005 * 301.35852 * 18 17 16 47 47 H 0.97005 * 119.99971 * 179.97438 * 22 21 19 48 48 H 1.08998 * 109.49801 * 58.57816 * 27 18 17 49 49 H 1.09000 * 109.49366 * 178.67791 * 27 18 17 50 50 H 1.09001 * 109.58664 * 246.19823 * 28 15 13 51 51 H 1.08997 * 109.58812 * 6.62528 * 28 15 13 52 52 H 1.09005 * 109.95615 * 60.22861 * 29 2 1 53 53 H 1.09006 * 110.00246 * 299.07702 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8750 1.0339 0.0000 4 6 2.0144 -0.6726 -1.2804 5 6 3.3238 -0.0141 -1.6061 6 6 4.5110 -0.8713 -1.1029 7 6 4.1718 -1.4972 0.2728 8 1 3.5497 -2.3758 0.1022 9 6 5.4799 -1.9606 0.9169 10 7 3.4931 -0.6430 1.2040 11 6 4.1916 0.1473 2.0431 12 8 5.3973 0.2310 1.9349 13 6 3.4812 0.9203 3.1066 14 8 2.2971 0.7389 3.3002 15 7 4.1557 1.8190 3.8509 16 6 3.4642 2.6103 4.8777 17 6 3.7441 4.0955 4.6272 18 6 5.2564 4.3231 4.5708 19 6 5.5360 5.7886 4.3584 20 1 4.7172 6.4875 4.2718 21 6 6.8370 6.2363 4.2690 22 7 7.0809 7.5145 4.0782 23 14 8.2532 5.0274 4.4188 24 1 8.6027 4.5051 3.0733 25 1 9.4318 5.7156 5.0042 26 1 7.8510 3.9004 5.2981 27 6 5.8522 3.5175 3.4140 28 6 5.5965 2.0257 3.6510 29 6 1.9917 -0.6481 1.2331 30 1 -0.3634 -1.0269 -0.0411 31 1 -0.3634 0.4779 0.9097 32 1 -0.3634 0.5490 -0.8688 33 1 1.2991 -0.5091 -2.0864 34 1 2.1601 -1.7399 -1.1140 35 1 3.3611 0.9653 -1.1292 36 1 3.4037 0.1105 -2.6861 37 1 5.3954 -0.2418 -1.0052 38 1 4.7131 -1.6658 -1.8214 39 1 5.2885 -2.2736 1.9433 40 1 5.8863 -2.7991 0.3512 41 1 6.1967 -1.1395 0.9150 42 1 3.8330 2.3304 5.8646 43 1 2.3915 2.4259 4.8203 44 1 3.3170 4.6877 5.4364 45 1 3.2955 4.3956 3.6801 46 1 5.7075 3.9996 5.5089 47 1 7.9963 7.8295 4.0157 48 1 5.3835 3.8230 2.4786 49 1 6.9257 3.6983 3.3598 50 1 6.1391 1.6981 4.5378 51 1 5.9307 1.4555 2.7843 52 1 1.6258 -1.6741 1.2736 53 1 1.6365 -0.0932 2.1015 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324990462.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:20 Heat of formation + Delta-G solvation = -47.222716 kcal Electronic energy + Delta-G solvation = -32015.309099 eV Core-core repulsion = 28080.755162 eV Total energy + Delta-G solvation = -3934.553938 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.51193 -40.65639 -39.21943 -38.70507 -35.83892 -35.37099 -34.49038 -33.40451 -32.11424 -31.07629 -28.69941 -27.41660 -27.13935 -26.09147 -24.61026 -24.23802 -23.30957 -22.10578 -21.37986 -20.66515 -19.98534 -18.85724 -18.35071 -17.81735 -17.23431 -17.02986 -16.54618 -16.48572 -16.06193 -15.83459 -15.41218 -15.35724 -15.21966 -15.15554 -14.86841 -14.46894 -14.32839 -13.95030 -13.83982 -13.66748 -13.61292 -13.37637 -13.23577 -13.11520 -12.90174 -12.75878 -12.68139 -12.37893 -12.30894 -12.15157 -11.90975 -11.85051 -11.65494 -11.52248 -11.38936 -11.25807 -11.24490 -11.05879 -10.80928 -10.61937 -9.90435 -9.71293 -9.62577 -8.30979 -6.34691 0.28979 1.24164 1.30786 1.35129 1.45662 2.08203 2.27726 2.31520 2.98268 3.04815 3.68866 3.79507 3.89658 3.98074 4.04449 4.08616 4.13473 4.18543 4.23733 4.25062 4.36655 4.41488 4.52394 4.55527 4.58716 4.69295 4.74360 4.77542 4.79293 4.85421 4.86432 4.91532 4.93125 4.98368 5.03285 5.03692 5.11122 5.17943 5.21073 5.25913 5.32486 5.38243 5.40218 5.42966 5.48515 5.53635 5.64858 5.68059 5.75461 6.01029 6.25520 6.29420 6.68551 6.72221 6.93751 7.30784 8.85917 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015199 B = 0.003604 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.834278 B = 7766.737960 C = 8309.684400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 H 0.043 0.957 4 C -0.107 4.107 5 C -0.121 4.121 6 C -0.124 4.124 7 C 0.134 3.866 8 H 0.106 0.894 9 C -0.165 4.165 10 N -0.563 5.563 11 C 0.507 3.493 12 O -0.518 6.518 13 C 0.502 3.498 14 O -0.531 6.531 15 N -0.567 5.567 16 C 0.110 3.890 17 C -0.106 4.106 18 C 0.011 3.989 19 C -0.519 4.519 20 H 0.032 0.968 21 C 0.011 3.989 22 N -0.951 5.951 23 Si 0.946 3.054 24 H -0.268 1.268 25 H -0.299 1.299 26 H -0.240 1.240 27 C -0.127 4.127 28 C 0.054 3.946 29 C 0.062 3.938 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.034 0.966 36 H 0.068 0.932 37 H 0.048 0.952 38 H 0.099 0.901 39 H 0.041 0.959 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.099 0.901 44 H 0.074 0.926 45 H 0.043 0.957 46 H 0.032 0.968 47 H 0.265 0.735 48 H 0.046 0.954 49 H 0.047 0.953 50 H 0.072 0.928 51 H 0.155 0.845 52 H 0.095 0.905 53 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.312 -24.963 -9.744 28.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.129 4.129 3 H 0.061 0.939 4 C -0.145 4.145 5 C -0.159 4.159 6 C -0.163 4.163 7 C 0.031 3.969 8 H 0.124 0.876 9 C -0.223 4.223 10 N -0.294 5.294 11 C 0.291 3.709 12 O -0.397 6.397 13 C 0.286 3.714 14 O -0.411 6.411 15 N -0.298 5.298 16 C -0.011 4.011 17 C -0.144 4.144 18 C -0.008 4.008 19 C -0.557 4.557 20 H 0.050 0.950 21 C -0.186 4.186 22 N -0.592 5.592 23 Si 0.773 3.227 24 H -0.195 1.195 25 H -0.227 1.227 26 H -0.164 1.164 27 C -0.165 4.165 28 C -0.067 4.067 29 C -0.056 4.056 30 H 0.091 0.909 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.052 0.948 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.117 0.883 39 H 0.060 0.940 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.105 0.895 43 H 0.117 0.883 44 H 0.093 0.907 45 H 0.062 0.938 46 H 0.050 0.950 47 H 0.074 0.926 48 H 0.064 0.936 49 H 0.065 0.935 50 H 0.090 0.910 51 H 0.171 0.829 52 H 0.114 0.886 53 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.175 -24.895 -9.703 28.591 hybrid contribution 1.027 0.907 0.089 1.373 sum -9.148 -23.988 -9.614 27.414 Atomic orbital electron populations 1.21856 0.93372 1.02883 1.01938 1.20532 0.97480 0.99350 0.95500 0.93885 1.21174 0.96262 1.00533 0.96485 1.21555 0.95199 0.98171 1.00965 1.22657 0.97810 1.00319 0.95476 1.21034 0.94690 0.92154 0.89033 0.87599 1.22395 0.97791 1.02273 0.99830 1.48179 1.08740 1.39396 1.33115 1.20041 0.86939 0.80956 0.83011 1.90272 1.14719 1.62375 1.72382 1.20311 0.86770 0.81281 0.82995 1.90271 1.15208 1.66782 1.68880 1.48174 1.10690 1.36132 1.34801 1.21910 0.98601 0.90009 0.90581 1.21702 0.96715 0.94628 1.01334 1.19152 0.94024 0.93199 0.94433 1.21379 0.92452 0.93058 1.48767 0.94976 1.25896 1.01808 0.96635 0.94224 1.70057 1.21043 1.16139 1.51926 0.85878 0.78044 0.79556 0.79224 1.19474 1.22688 1.16362 1.22177 0.99513 0.94729 1.00068 1.23347 0.78969 0.97592 1.06807 1.22866 0.75604 1.04586 1.02537 0.90856 0.93241 0.92095 0.90201 0.89735 0.94755 0.91296 0.93342 0.88303 0.93970 0.90447 0.91089 0.89485 0.88264 0.90695 0.93780 0.95005 0.92615 0.93551 0.93463 0.90961 0.82896 0.88647 0.84020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 8.86 71.98 0.64 -1.36 16 2 C -0.11 -1.87 2.23 -12.89 -0.03 -1.90 16 3 H 0.04 0.99 6.93 -2.39 -0.02 0.97 16 4 C -0.11 -1.42 5.19 29.51 0.15 -1.27 16 5 C -0.12 -2.04 5.65 30.30 0.17 -1.87 16 6 C -0.12 -2.04 5.72 31.87 0.18 -1.86 16 7 C 0.13 2.33 2.16 46.21 0.10 2.43 16 8 H 0.11 1.31 6.89 -2.39 -0.02 1.29 16 9 C -0.17 -3.19 7.77 71.98 0.56 -2.63 16 10 N -0.56 -12.31 2.49 -804.00 -2.01 -14.32 16 11 C 0.51 14.32 7.14 87.27 0.62 14.95 16 12 O -0.52 -16.04 9.84 -3.23 -0.03 -16.07 16 13 C 0.50 15.48 7.66 87.27 0.67 16.15 16 14 O -0.53 -16.28 12.49 -3.23 -0.04 -16.32 16 15 N -0.57 -18.63 2.97 -820.48 -2.44 -21.07 16 16 C 0.11 3.47 6.43 86.36 0.56 4.03 16 17 C -0.11 -4.07 5.30 30.67 0.16 -3.91 16 18 C 0.01 0.49 1.66 -11.51 -0.02 0.47 16 19 C -0.52 -29.68 9.14 25.60 0.23 -29.44 16 20 H 0.03 2.03 7.99 -2.91 -0.02 2.01 16 21 C 0.01 0.65 5.45 84.65 0.46 1.11 16 22 N -0.95 -60.23 13.96 21.45 0.30 -59.93 16 23 Si 0.95 45.18 24.38 68.60 1.67 46.86 16 24 H -0.27 -12.37 6.85 99.48 0.68 -11.69 16 25 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 26 H -0.24 -10.42 6.54 99.48 0.65 -9.77 16 27 C -0.13 -5.39 4.85 30.67 0.15 -5.25 16 28 C 0.05 1.87 6.22 86.36 0.54 2.41 16 29 C 0.06 1.17 5.02 83.73 0.42 1.59 16 30 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.05 0.79 8.13 -2.39 -0.02 0.78 16 32 H 0.06 0.80 8.09 -2.38 -0.02 0.78 16 33 H 0.08 0.90 7.80 -2.39 -0.02 0.88 16 34 H 0.08 0.87 6.29 -2.38 -0.01 0.86 16 35 H 0.03 0.78 6.83 -2.39 -0.02 0.76 16 36 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.05 1.02 7.85 -2.39 -0.02 1.00 16 38 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.04 0.89 7.92 -2.39 -0.02 0.87 16 40 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.07 1.75 5.73 -2.39 -0.01 1.74 16 42 H 0.09 2.45 8.14 -2.38 -0.02 2.43 16 43 H 0.10 2.90 7.01 -2.39 -0.02 2.88 16 44 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 45 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.03 1.44 7.21 -2.38 -0.02 1.42 16 47 H 0.26 15.74 8.31 -92.70 -0.77 14.97 16 48 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 49 H 0.05 2.11 3.23 -2.39 -0.01 2.10 16 50 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 51 H 0.16 5.34 3.80 -81.69 -0.31 5.03 16 52 H 0.10 1.33 8.12 -2.38 -0.02 1.31 16 53 H 0.14 3.36 3.86 -75.20 -0.29 3.07 16 Total: -1.00 -67.41 378.31 3.26 -64.15 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: 0.24 Total: 23.04 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: 5.57 Total: -6.34 kcal Atomic # 7 Polarization: -91.18 SS G_CDS: -4.14 Total: -95.32 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -0.07 Total: -32.39 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.67 Total: 46.86 kcal Total: -67.41 3.26 -64.15 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324990462.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.932 kcal (2) G-P(sol) polarization free energy of solvation -67.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds