Wall clock time and date at job start Tue Mar 31 2020 19:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47183 * 2 1 4 4 C 1.53000 * 109.47269 * 239.99810 * 2 1 3 5 5 C 1.53004 * 109.47473 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.46744 * 300.00232 * 5 4 2 7 7 C 1.52996 * 109.47033 * 180.02562 * 5 4 2 8 8 C 1.52995 * 109.47186 * 59.99841 * 5 4 2 9 9 C 1.53000 * 109.47504 * 300.00700 * 8 5 4 10 10 C 1.53004 * 109.47471 * 59.99474 * 9 8 5 11 11 H 1.08995 * 109.47588 * 180.02562 * 10 9 8 12 12 N 1.46497 * 109.46836 * 59.99984 * 10 9 8 13 13 C 1.34776 * 119.99615 * 85.00285 * 12 10 9 14 14 O 1.21348 * 120.00386 * 359.97438 * 13 12 10 15 15 C 1.49455 * 119.99979 * 179.97438 * 13 12 10 16 16 O 1.21340 * 119.99939 * 354.48954 * 15 13 12 17 17 N 1.34779 * 119.99698 * 174.48779 * 15 13 12 18 18 C 1.46500 * 119.99472 * 185.59274 * 17 15 13 19 19 C 1.53000 * 109.46773 * 185.19784 * 18 17 15 20 20 C 1.50696 * 115.55434 * 57.84094 * 19 18 17 21 21 H 1.08006 * 119.99959 * 264.65471 * 20 19 18 22 22 C 1.37872 * 120.00500 * 84.64892 * 20 19 18 23 23 N 1.31523 * 119.99685 * 1.97285 * 22 20 19 24 24 Si 1.86795 * 120.00462 * 181.97114 * 22 20 19 25 25 H 1.48503 * 109.47113 * 90.00000 * 24 22 20 26 26 H 1.48498 * 109.47456 * 210.00126 * 24 22 20 27 27 H 1.48501 * 109.47260 * 330.00548 * 24 22 20 28 28 C 1.53008 * 117.49816 * 272.16575 * 19 18 17 29 29 C 1.53007 * 117.49890 * 203.50788 * 19 18 17 30 30 H 1.09000 * 109.47089 * 299.99830 * 1 2 3 31 31 H 1.09000 * 109.47085 * 60.00441 * 1 2 3 32 32 H 1.09006 * 109.46962 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47236 * 300.00269 * 4 2 1 34 34 H 1.09001 * 109.46996 * 60.00329 * 4 2 1 35 35 H 1.09006 * 109.46894 * 179.97438 * 6 5 4 36 36 H 1.09001 * 109.47458 * 299.99502 * 6 5 4 37 37 H 1.09000 * 109.47121 * 60.00024 * 6 5 4 38 38 H 1.08994 * 109.47166 * 299.99928 * 7 5 4 39 39 H 1.09001 * 109.47442 * 60.00329 * 7 5 4 40 40 H 1.09006 * 109.46901 * 179.97438 * 7 5 4 41 41 H 1.08994 * 109.47479 * 179.97438 * 8 5 4 42 42 H 1.09004 * 109.46680 * 60.00242 * 8 5 4 43 43 H 1.09006 * 109.46510 * 299.99951 * 9 8 5 44 44 H 1.08990 * 109.47680 * 179.97438 * 9 8 5 45 45 H 0.96999 * 120.00409 * 264.99828 * 12 10 9 46 46 H 0.97001 * 120.00318 * 5.59712 * 17 15 13 47 47 H 1.08999 * 109.47242 * 305.19392 * 18 17 15 48 48 H 1.09000 * 109.47355 * 65.19662 * 18 17 15 49 49 H 0.96999 * 119.99681 * 185.01363 * 23 22 20 50 50 H 1.08996 * 117.49618 * 0.02562 * 28 19 18 51 51 H 1.09000 * 117.49676 * 145.02611 * 28 19 18 52 52 H 1.08996 * 117.50186 * 214.98080 * 29 19 18 53 53 H 1.09003 * 117.49286 * 0.02562 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7208 -1.2496 6 6 4.0794 0.7220 -1.2499 7 6 4.0800 -1.4415 -2.4991 8 6 4.0806 -1.4415 -0.0003 9 6 3.5706 -0.7204 1.2489 10 6 2.0405 -0.7209 1.2493 11 1 1.6771 -0.2068 2.1390 12 7 1.5527 -2.1023 1.2495 13 6 1.4245 -2.7714 2.4124 14 8 1.7136 -2.2298 3.4592 15 6 0.9264 -4.1805 2.4128 16 8 0.5430 -4.6887 1.3798 17 7 0.9031 -4.8866 3.5605 18 6 0.5316 -6.3036 3.5412 19 6 0.4586 -6.8312 4.9755 20 6 -0.5025 -6.1103 5.8852 21 1 -0.1472 -5.3178 6.5272 22 6 -1.8355 -6.4622 5.8979 23 7 -2.2613 -7.4529 5.1449 24 14 -3.0369 -5.5321 6.9846 25 1 -3.6027 -4.3859 6.2289 26 1 -4.1348 -6.4415 7.4001 27 1 -2.3280 -5.0294 8.1888 28 6 1.7486 -7.3713 5.5962 29 6 0.6344 -8.3367 5.1843 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6766 -1.7490 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 5.1695 0.7224 -1.2497 36 1 3.7158 1.2356 -2.1399 37 1 3.7161 1.2358 -0.3599 38 1 3.7170 -2.4692 -2.4993 39 1 3.7163 -0.9275 -3.3889 40 1 5.1700 -1.4407 -2.4996 41 1 5.1705 -1.4416 -0.0008 42 1 3.7176 -2.4694 -0.0001 43 1 3.9335 0.3075 1.2486 44 1 3.9339 -1.2341 2.1389 45 1 1.3220 -2.5353 0.4128 46 1 1.1322 -4.4566 4.3993 47 1 -0.4407 -6.4179 3.0621 48 1 1.2796 -6.8678 2.9842 49 1 -3.2091 -7.6538 5.0980 50 1 2.6494 -7.3503 4.9828 51 1 1.9019 -7.2054 6.6625 52 1 0.0552 -8.8056 5.9798 53 1 0.8025 -8.9512 4.2998 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325457042.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:48 Heat of formation + Delta-G solvation = -92.620556 kcal Electronic energy + Delta-G solvation = -30520.760510 eV Core-core repulsion = 26584.237974 eV Total energy + Delta-G solvation = -3936.522536 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.01960 -40.76188 -39.33821 -38.46329 -36.25119 -35.03514 -33.99091 -33.66344 -32.27167 -28.81702 -28.13967 -27.55997 -27.54713 -27.02222 -24.84136 -23.01540 -22.85549 -21.47589 -21.24858 -21.22737 -19.62851 -19.16400 -18.00298 -17.70994 -17.03545 -16.67436 -16.47599 -16.36449 -16.03845 -15.87110 -15.56505 -15.25238 -14.96728 -14.86593 -14.62258 -14.45540 -14.36982 -13.74821 -13.67462 -13.49653 -13.28896 -13.01055 -12.94836 -12.85971 -12.75856 -12.69594 -12.66298 -12.49116 -12.38577 -12.17278 -12.03013 -12.02237 -11.74884 -11.44973 -11.17698 -11.08080 -10.99696 -10.89805 -10.68665 -10.43697 -10.22376 -10.13886 -9.89724 -8.13179 -6.25918 0.40573 1.39283 1.41624 1.42738 1.49978 2.19158 2.40435 2.74776 3.15692 3.43205 3.57372 3.62449 3.70246 3.73417 4.01341 4.13783 4.20128 4.31090 4.36318 4.48321 4.49775 4.50743 4.58229 4.62439 4.66164 4.72217 4.77813 4.88881 4.90903 4.92527 4.98155 5.01568 5.02673 5.06269 5.11665 5.18160 5.18576 5.23119 5.26227 5.27493 5.35072 5.36668 5.45771 5.49293 5.52900 5.53633 5.66407 5.67417 5.74991 6.04307 6.34067 6.47531 6.80229 6.82149 7.02662 7.43930 8.94376 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017353 B = 0.002736 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.156634 B =10231.763999 C =10888.245884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.089 4.089 3 H 0.110 0.890 4 C -0.106 4.106 5 C -0.061 4.061 6 C -0.142 4.142 7 C -0.141 4.141 8 C -0.107 4.107 9 C -0.127 4.127 10 C 0.145 3.855 11 H 0.079 0.921 12 N -0.677 5.677 13 C 0.514 3.486 14 O -0.541 6.541 15 C 0.492 3.508 16 O -0.559 6.559 17 N -0.667 5.667 18 C 0.174 3.826 19 C -0.002 4.002 20 C -0.506 4.506 21 H 0.057 0.943 22 C 0.028 3.972 23 N -0.903 5.903 24 Si 0.944 3.056 25 H -0.282 1.282 26 H -0.285 1.285 27 H -0.266 1.266 28 C -0.181 4.181 29 C -0.147 4.147 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.041 0.959 33 H 0.051 0.949 34 H 0.082 0.918 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.046 0.954 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.068 0.932 42 H 0.046 0.954 43 H 0.097 0.903 44 H 0.047 0.953 45 H 0.413 0.587 46 H 0.414 0.586 47 H 0.041 0.959 48 H 0.055 0.945 49 H 0.260 0.740 50 H 0.092 0.908 51 H 0.082 0.918 52 H 0.064 0.936 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.436 16.917 -14.846 25.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.108 4.108 3 H 0.128 0.872 4 C -0.143 4.143 5 C -0.062 4.062 6 C -0.199 4.199 7 C -0.199 4.199 8 C -0.145 4.145 9 C -0.166 4.166 10 C 0.041 3.959 11 H 0.097 0.903 12 N -0.331 5.331 13 C 0.294 3.706 14 O -0.419 6.419 15 C 0.273 3.727 16 O -0.439 6.439 17 N -0.317 5.317 18 C 0.051 3.949 19 C -0.003 4.003 20 C -0.544 4.544 21 H 0.075 0.925 22 C -0.173 4.173 23 N -0.541 5.541 24 Si 0.770 3.230 25 H -0.208 1.208 26 H -0.211 1.211 27 H -0.191 1.191 28 C -0.218 4.218 29 C -0.186 4.186 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.064 0.936 43 H 0.115 0.885 44 H 0.066 0.934 45 H 0.252 0.748 46 H 0.251 0.749 47 H 0.059 0.941 48 H 0.073 0.927 49 H 0.069 0.931 50 H 0.110 0.890 51 H 0.100 0.900 52 H 0.083 0.917 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 12.232 16.783 -14.818 25.512 hybrid contribution -1.165 -0.243 0.781 1.424 sum 11.067 16.539 -14.037 24.353 Atomic orbital electron populations 1.21861 0.94927 1.01582 1.02496 1.21452 0.95703 1.00801 0.92846 0.87217 1.21701 0.94736 1.00220 0.97686 1.20515 0.94712 0.96413 0.94511 1.21955 1.01009 0.94522 1.02438 1.21854 1.01098 0.99884 0.97020 1.21564 1.00571 0.98548 0.93783 1.21937 0.93936 1.02640 0.98055 1.21307 0.94563 0.80046 0.99960 0.90313 1.45877 1.64044 1.14937 1.08234 1.19966 0.78946 0.86573 0.85077 1.90732 1.49911 1.69182 1.32036 1.20466 0.80181 0.87609 0.84440 1.90687 1.48641 1.71888 1.32674 1.45757 1.64520 1.11846 1.09572 1.20808 0.97868 0.78814 0.97432 1.19065 0.95470 0.94137 0.91635 1.20650 0.92811 1.18426 1.22531 0.92473 1.25625 0.99958 0.95044 0.96626 1.70091 1.14808 1.28584 1.40574 0.85772 0.79073 0.78452 0.79698 1.20805 1.21093 1.19064 1.23060 0.92304 1.05905 1.00566 1.22400 1.01414 0.93386 1.01360 0.92932 0.90705 0.93994 0.92984 0.89942 0.92567 0.91921 0.91670 0.93514 0.91801 0.92406 0.91358 0.93555 0.88495 0.93391 0.74832 0.74911 0.94067 0.92671 0.93137 0.88956 0.89964 0.91722 0.90546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.04 71.98 0.65 -1.73 16 2 C -0.09 -1.24 2.24 -10.79 -0.02 -1.26 16 3 H 0.11 1.14 6.43 -2.39 -0.02 1.12 16 4 C -0.11 -1.37 3.84 30.60 0.12 -1.25 16 5 C -0.06 -0.76 0.77 -52.18 -0.04 -0.80 16 6 C -0.14 -1.35 7.78 71.98 0.56 -0.79 16 7 C -0.14 -1.71 8.47 71.98 0.61 -1.10 16 8 C -0.11 -1.72 4.57 30.59 0.14 -1.58 16 9 C -0.13 -2.24 5.33 30.60 0.16 -2.08 16 10 C 0.14 2.83 2.23 45.00 0.10 2.93 16 11 H 0.08 1.79 7.58 -2.39 -0.02 1.77 16 12 N -0.68 -16.96 3.53 -443.86 -1.57 -18.53 16 13 C 0.51 16.98 7.85 87.27 0.69 17.66 16 14 O -0.54 -19.83 16.15 -3.24 -0.05 -19.88 16 15 C 0.49 19.04 7.88 87.27 0.69 19.72 16 16 O -0.56 -23.43 16.46 -3.22 -0.05 -23.49 16 17 N -0.67 -27.41 5.37 -464.41 -2.49 -29.91 16 18 C 0.17 7.85 5.57 86.38 0.48 8.33 16 19 C 0.00 -0.11 1.51 -52.92 -0.08 -0.19 16 20 C -0.51 -26.59 8.38 25.60 0.21 -26.38 16 21 H 0.06 2.98 7.81 -2.91 -0.02 2.96 16 22 C 0.03 1.54 5.43 84.65 0.46 2.00 16 23 N -0.90 -51.02 12.72 21.45 0.27 -50.75 16 24 Si 0.94 43.38 29.54 68.60 2.03 45.41 16 25 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 26 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 27 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 28 C -0.18 -7.29 9.94 30.62 0.30 -6.99 16 29 C -0.15 -6.65 9.26 30.62 0.28 -6.37 16 30 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.04 0.81 7.45 -2.38 -0.02 0.79 16 33 H 0.05 0.82 6.51 -2.38 -0.02 0.80 16 34 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 36 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.06 0.58 4.81 -2.39 -0.01 0.56 16 38 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 41 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.05 0.91 7.60 -2.38 -0.02 0.90 16 43 H 0.10 1.30 6.43 -2.38 -0.02 1.28 16 44 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.41 9.91 6.14 -92.71 -0.57 9.34 16 46 H 0.41 16.84 7.73 -92.71 -0.72 16.12 16 47 H 0.04 2.14 8.09 -2.39 -0.02 2.12 16 48 H 0.06 2.30 8.11 -2.39 -0.02 2.28 16 49 H 0.26 14.16 8.32 -92.71 -0.77 13.38 16 50 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 51 H 0.08 3.26 8.14 -2.39 -0.02 3.25 16 52 H 0.06 3.19 8.14 -2.39 -0.02 3.17 16 53 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 Total: -1.00 -61.89 412.16 3.07 -58.83 By element: Atomic # 1 Polarization: 38.56 SS G_CDS: -0.38 Total: 38.18 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: 5.31 Total: 0.13 kcal Atomic # 7 Polarization: -95.40 SS G_CDS: -3.79 Total: -99.18 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -0.11 Total: -43.37 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -61.89 3.07 -58.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325457042.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.792 kcal (2) G-P(sol) polarization free energy of solvation -61.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds