Wall clock time and date at job start Tue Mar 31 2020 19:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47023 * 2 1 4 4 C 1.53002 * 109.47335 * 119.99985 * 2 1 3 5 5 C 1.53003 * 109.47165 * 180.02562 * 4 2 1 6 6 C 1.52992 * 109.46896 * 60.00125 * 5 4 2 7 7 C 1.52997 * 109.46778 * 180.02562 * 5 4 2 8 8 C 1.52998 * 109.46869 * 300.00103 * 5 4 2 9 9 C 1.52994 * 109.47418 * 60.00179 * 8 5 4 10 10 C 1.52998 * 109.47373 * 240.00099 * 2 1 3 11 11 H 1.09002 * 109.47491 * 299.99930 * 10 2 1 12 12 N 1.46508 * 109.47035 * 59.99854 * 10 2 1 13 13 C 1.34773 * 119.99680 * 204.99993 * 12 10 2 14 14 O 1.21343 * 120.00569 * 0.02562 * 13 12 10 15 15 C 1.49457 * 119.99438 * 179.97438 * 13 12 10 16 16 O 1.21348 * 120.00281 * 354.95078 * 15 13 12 17 17 N 1.34778 * 119.99518 * 174.94869 * 15 13 12 18 18 C 1.46506 * 119.99639 * 185.06706 * 17 15 13 19 19 C 1.53001 * 109.47030 * 185.01012 * 18 17 15 20 20 C 1.50697 * 115.54782 * 269.60681 * 19 18 17 21 21 H 1.07999 * 120.00463 * 95.24109 * 20 19 18 22 22 C 1.37879 * 119.99805 * 275.24477 * 20 19 18 23 23 N 1.31515 * 120.00102 * 5.15129 * 22 20 19 24 24 Si 1.86798 * 120.00279 * 185.14573 * 22 20 19 25 25 H 1.48503 * 109.46908 * 60.00043 * 24 22 20 26 26 H 1.48495 * 109.47538 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47173 * 300.00309 * 24 22 20 28 28 C 1.52997 * 117.50020 * 123.89336 * 19 18 17 29 29 C 1.52995 * 117.49999 * 55.27051 * 19 18 17 30 30 H 1.09002 * 109.46755 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47245 * 299.99657 * 1 2 3 32 32 H 1.09000 * 109.46973 * 60.00109 * 1 2 3 33 33 H 1.08994 * 109.47247 * 300.00357 * 4 2 1 34 34 H 1.09003 * 109.47053 * 60.00033 * 4 2 1 35 35 H 1.08997 * 109.47743 * 60.00141 * 6 5 4 36 36 H 1.09010 * 109.46974 * 179.97438 * 6 5 4 37 37 H 1.09000 * 109.47215 * 299.99528 * 6 5 4 38 38 H 1.08993 * 109.47522 * 59.99660 * 7 5 4 39 39 H 1.09005 * 109.47124 * 180.02562 * 7 5 4 40 40 H 1.09007 * 109.47021 * 299.99462 * 7 5 4 41 41 H 1.09006 * 109.47052 * 180.02562 * 8 5 4 42 42 H 1.09002 * 109.47484 * 300.00049 * 8 5 4 43 43 H 1.09007 * 109.47200 * 180.02562 * 9 8 5 44 44 H 1.09003 * 109.47156 * 59.99997 * 9 8 5 45 45 H 0.96998 * 119.99589 * 24.99790 * 12 10 2 46 46 H 0.96997 * 120.00643 * 5.06586 * 17 15 13 47 47 H 1.09004 * 109.46751 * 305.00562 * 18 17 15 48 48 H 1.08996 * 109.47190 * 65.00733 * 18 17 15 49 49 H 0.97006 * 120.00274 * 185.00411 * 23 22 20 50 50 H 1.09001 * 117.50002 * 0.02562 * 28 19 18 51 51 H 1.09007 * 117.49637 * 145.01423 * 28 19 18 52 52 H 1.09002 * 117.49974 * 214.97985 * 29 19 18 53 53 H 1.09000 * 117.50082 * 0.02562 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5701 -0.7207 1.2495 6 6 4.0794 0.7220 1.2499 7 6 4.0800 -1.4425 2.4984 8 6 4.0805 -1.4415 0.0003 9 6 3.5705 -0.7203 -1.2489 10 6 2.0400 -0.7212 -1.2492 11 1 1.6768 -1.7489 -1.2493 12 7 1.5517 -0.0306 -2.4454 13 6 1.4230 -0.7029 -3.6064 14 8 1.7112 -1.8804 -3.6608 15 6 0.9243 0.0015 -4.8265 16 8 0.5487 1.1530 -4.7514 17 7 0.8918 -0.6421 -6.0102 18 6 0.5087 0.0797 -7.2262 19 6 0.4317 -0.9007 -8.3983 20 6 1.7077 -1.0816 -9.1792 21 1 2.3735 -1.8988 -8.9442 22 6 2.0253 -0.2037 -10.1939 23 7 1.2679 0.8487 -10.4140 24 14 3.5315 -0.5089 -11.2558 25 1 3.3951 -1.8180 -11.9436 26 1 3.6516 0.5719 -12.2670 27 1 4.7455 -0.5232 -10.4007 28 6 -0.8867 -0.9758 -9.1709 29 6 -0.4789 -2.1200 -8.2407 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6767 -0.2075 2.1392 34 1 1.6767 -1.7489 1.2492 35 1 3.7158 1.2356 2.1398 36 1 5.1695 0.7224 1.2505 37 1 3.7161 1.2358 0.3599 38 1 3.7171 -2.4702 2.4978 39 1 5.1701 -1.4417 2.4989 40 1 3.7164 -0.9292 3.3887 41 1 5.1706 -1.4415 0.0007 42 1 3.7176 -2.4693 0.0000 43 1 3.9338 -1.2342 -2.1390 44 1 3.9335 0.3075 -1.2487 45 1 1.3209 0.9106 -2.4018 46 1 1.1220 -1.5832 -6.0571 47 1 -0.4647 0.5477 -7.0794 48 1 1.2520 0.8470 -7.4425 49 1 1.4486 1.4263 -11.1721 50 1 -1.6991 -0.3264 -8.8445 51 1 -0.8313 -1.1558 -10.2446 52 1 -0.1553 -3.0529 -8.7024 53 1 -1.0235 -2.2236 -7.3022 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325457044.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:55 Heat of formation + Delta-G solvation = -96.003077 kcal Electronic energy + Delta-G solvation = -29951.426613 eV Core-core repulsion = 26014.757401 eV Total energy + Delta-G solvation = -3936.669213 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.91253 -40.74980 -39.44858 -38.50646 -36.47276 -35.05052 -33.96872 -33.68109 -32.31030 -28.90311 -28.16626 -27.61988 -27.50306 -26.86382 -24.53367 -23.13272 -22.88422 -21.62934 -21.30155 -21.14930 -19.81410 -19.09736 -18.07166 -17.89038 -16.97838 -16.90267 -16.57629 -16.31663 -15.93639 -15.87755 -15.58592 -15.34811 -14.96725 -14.88227 -14.59453 -14.36520 -14.00438 -13.76262 -13.65839 -13.41809 -13.33406 -13.22500 -13.00622 -12.80806 -12.78619 -12.72195 -12.69646 -12.52783 -12.40214 -12.16414 -12.06170 -11.94783 -11.71255 -11.54833 -11.21006 -11.17443 -10.99021 -10.90618 -10.69592 -10.48552 -10.20803 -10.09927 -10.03846 -8.13328 -6.26289 0.37051 1.35933 1.43202 1.43813 1.50903 2.16641 2.41951 2.67835 3.15667 3.39261 3.54345 3.59009 3.65896 3.83594 3.99947 4.12044 4.17190 4.28702 4.36512 4.42193 4.50268 4.51341 4.56552 4.62813 4.67816 4.69905 4.80413 4.87541 4.88270 4.89743 4.98186 5.00352 5.01941 5.07263 5.11374 5.15411 5.19042 5.23904 5.24401 5.25515 5.30466 5.33641 5.42090 5.50956 5.52613 5.57431 5.62046 5.65968 5.74689 6.00546 6.34284 6.43720 6.75700 6.82443 6.98992 7.43525 8.94732 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018431 B = 0.002358 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.778496 B =11869.177232 C =12560.928191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.092 4.092 3 H 0.089 0.911 4 C -0.095 4.095 5 C -0.065 4.065 6 C -0.145 4.145 7 C -0.139 4.139 8 C -0.101 4.101 9 C -0.130 4.130 10 C 0.149 3.851 11 H 0.077 0.923 12 N -0.682 5.682 13 C 0.516 3.484 14 O -0.540 6.540 15 C 0.495 3.505 16 O -0.555 6.555 17 N -0.675 5.675 18 C 0.177 3.823 19 C 0.001 3.999 20 C -0.512 4.512 21 H 0.056 0.944 22 C 0.027 3.973 23 N -0.904 5.904 24 Si 0.948 3.052 25 H -0.271 1.271 26 H -0.286 1.286 27 H -0.275 1.275 28 C -0.151 4.151 29 C -0.178 4.178 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.047 0.953 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.044 0.956 44 H 0.075 0.925 45 H 0.417 0.583 46 H 0.414 0.586 47 H 0.048 0.952 48 H 0.043 0.957 49 H 0.261 0.739 50 H 0.075 0.925 51 H 0.066 0.934 52 H 0.085 0.915 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.440 -2.056 26.766 26.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.111 4.111 3 H 0.108 0.892 4 C -0.133 4.133 5 C -0.065 4.065 6 C -0.202 4.202 7 C -0.196 4.196 8 C -0.139 4.139 9 C -0.169 4.169 10 C 0.046 3.954 11 H 0.095 0.905 12 N -0.335 5.335 13 C 0.296 3.704 14 O -0.418 6.418 15 C 0.275 3.725 16 O -0.434 6.434 17 N -0.326 5.326 18 C 0.054 3.946 19 C 0.000 4.000 20 C -0.550 4.550 21 H 0.074 0.926 22 C -0.174 4.174 23 N -0.541 5.541 24 Si 0.774 3.226 25 H -0.196 1.196 26 H -0.211 1.211 27 H -0.200 1.200 28 C -0.189 4.189 29 C -0.216 4.216 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.063 0.937 44 H 0.093 0.907 45 H 0.254 0.746 46 H 0.251 0.749 47 H 0.066 0.934 48 H 0.062 0.938 49 H 0.070 0.930 50 H 0.094 0.906 51 H 0.084 0.916 52 H 0.104 0.896 53 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.410 -1.873 26.681 26.855 hybrid contribution 0.686 0.072 -1.383 1.545 sum 3.096 -1.801 25.298 25.551 Atomic orbital electron populations 1.21850 0.94475 1.02021 1.02309 1.21429 0.96093 1.00588 0.92990 0.89241 1.21604 0.94245 1.00802 0.96616 1.20561 0.95123 0.95942 0.94844 1.21981 1.00932 0.95205 1.02129 1.21831 1.01044 1.00151 0.96601 1.21537 1.00688 0.98897 0.92815 1.21955 0.94394 1.01904 0.98614 1.21307 0.94134 0.97024 0.82970 0.90485 1.45848 1.64221 1.15076 1.08311 1.19956 0.78922 0.86673 0.84830 1.90735 1.49848 1.16121 1.85057 1.20463 0.80019 0.86690 0.85290 1.90705 1.48585 1.18030 1.86103 1.45956 1.65069 1.15122 1.06431 1.20907 0.97846 0.94062 0.81801 1.19072 0.91377 0.94841 0.94710 1.20683 1.05009 1.11908 1.17365 0.92553 1.25657 0.99025 0.94102 0.98601 1.70099 1.40866 1.14295 1.28813 0.85772 0.80338 0.77788 0.78690 1.19584 1.21142 1.19991 1.22481 0.98362 1.01327 0.96748 1.22973 1.04677 0.93397 1.00528 0.93018 0.90741 0.93382 0.89854 0.91714 0.91846 0.92781 0.92474 0.92648 0.92570 0.91840 0.91251 0.92061 0.93688 0.90655 0.74606 0.74933 0.93367 0.93813 0.92958 0.90641 0.91569 0.89603 0.89205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.04 71.98 0.65 -1.43 16 2 C -0.09 -1.24 2.02 -10.79 -0.02 -1.26 16 3 H 0.09 1.09 6.43 -2.39 -0.02 1.08 16 4 C -0.09 -1.03 4.01 30.60 0.12 -0.91 16 5 C -0.06 -0.72 0.77 -52.18 -0.04 -0.76 16 6 C -0.15 -1.55 7.78 71.98 0.56 -0.99 16 7 C -0.14 -1.32 8.47 71.98 0.61 -0.71 16 8 C -0.10 -1.49 4.73 30.59 0.14 -1.34 16 9 C -0.13 -2.45 5.22 30.61 0.16 -2.29 16 10 C 0.15 2.88 1.90 45.01 0.09 2.96 16 11 H 0.08 1.75 7.58 -2.39 -0.02 1.73 16 12 N -0.68 -16.23 4.38 -443.78 -1.94 -18.17 16 13 C 0.52 16.23 7.85 87.27 0.69 16.92 16 14 O -0.54 -18.96 16.15 -3.23 -0.05 -19.01 16 15 C 0.49 18.27 7.88 87.27 0.69 18.96 16 16 O -0.55 -22.41 16.47 -3.24 -0.05 -22.46 16 17 N -0.68 -26.58 5.40 -464.39 -2.51 -29.09 16 18 C 0.18 8.08 5.71 86.38 0.49 8.57 16 19 C 0.00 0.04 1.46 -52.93 -0.08 -0.04 16 20 C -0.51 -27.04 8.77 25.60 0.22 -26.81 16 21 H 0.06 2.95 7.82 -2.91 -0.02 2.93 16 22 C 0.03 1.46 5.40 84.66 0.46 1.92 16 23 N -0.90 -50.72 12.91 21.45 0.28 -50.44 16 24 Si 0.95 42.79 29.54 68.60 2.03 44.82 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 26 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 27 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 28 C -0.15 -6.82 9.38 30.59 0.29 -6.53 16 29 C -0.18 -7.19 9.50 30.59 0.29 -6.90 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.05 0.79 7.44 -2.39 -0.02 0.77 16 33 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 37 H 0.06 0.67 4.81 -2.39 -0.01 0.66 16 38 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 40 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 41 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 42 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 43 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 44 H 0.07 1.32 6.43 -2.39 -0.02 1.31 16 45 H 0.42 9.04 7.87 -92.71 -0.73 8.31 16 46 H 0.41 15.67 7.70 -92.71 -0.71 14.96 16 47 H 0.05 2.19 7.83 -2.38 -0.02 2.17 16 48 H 0.04 2.28 8.04 -2.39 -0.02 2.26 16 49 H 0.26 14.11 8.32 -92.70 -0.77 13.34 16 50 H 0.08 3.21 8.03 -2.39 -0.02 3.19 16 51 H 0.07 3.21 8.14 -2.38 -0.02 3.19 16 52 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 53 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -61.29 416.48 2.53 -58.76 By element: Atomic # 1 Polarization: 36.78 SS G_CDS: -0.54 Total: 36.24 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: 5.32 Total: -0.65 kcal Atomic # 7 Polarization: -93.53 SS G_CDS: -4.17 Total: -97.70 kcal Atomic # 8 Polarization: -41.37 SS G_CDS: -0.11 Total: -41.47 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -61.29 2.53 -58.76 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325457044.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.240 kcal (2) G-P(sol) polarization free energy of solvation -61.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds