Wall clock time and date at job start Tue Mar 31 2020 20:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47261 * 2 1 4 4 N 1.46510 * 109.46958 * 240.00532 * 2 1 3 5 5 C 1.34772 * 119.99913 * 84.99861 * 4 2 1 6 6 O 1.21348 * 120.00167 * 359.97438 * 5 4 2 7 7 C 1.49459 * 119.99731 * 180.02562 * 5 4 2 8 8 O 1.21346 * 119.99838 * 355.00751 * 7 5 4 9 9 N 1.34768 * 120.00063 * 175.01096 * 7 5 4 10 10 C 1.46498 * 120.00127 * 185.77694 * 9 7 5 11 11 C 1.52998 * 109.47157 * 183.68890 * 10 9 7 12 12 C 1.50706 * 115.55428 * 306.41619 * 11 10 9 13 13 H 1.07996 * 119.99829 * 145.10574 * 12 11 10 14 14 C 1.37875 * 119.99437 * 325.11092 * 12 11 10 15 15 N 1.31516 * 120.00518 * 349.44613 * 14 12 11 16 16 Si 1.86806 * 119.99618 * 169.44367 * 14 12 11 17 17 H 1.48500 * 109.46849 * 359.97438 * 16 14 12 18 18 H 1.48492 * 109.46937 * 119.99938 * 16 14 12 19 19 H 1.48498 * 109.47055 * 239.99985 * 16 14 12 20 20 C 1.53003 * 117.49970 * 160.74397 * 11 10 9 21 21 C 1.53006 * 117.49710 * 92.08719 * 11 10 9 22 22 C 1.52998 * 109.47498 * 120.00285 * 2 1 3 23 23 H 1.09004 * 109.46964 * 179.97438 * 22 2 1 24 24 C 1.53003 * 109.47146 * 60.00081 * 22 2 1 25 25 C 1.52996 * 109.47254 * 180.02562 * 24 22 2 26 26 C 1.52997 * 109.47322 * 59.99298 * 25 24 22 27 27 C 1.52994 * 109.47409 * 300.00543 * 26 25 24 28 28 H 1.08999 * 109.47310 * 180.02562 * 27 26 25 29 29 C 1.53001 * 109.46908 * 299.99444 * 27 26 25 30 30 C 1.52991 * 109.47211 * 299.99874 * 22 2 1 31 31 H 1.08998 * 109.47325 * 59.99862 * 1 2 3 32 32 H 1.09001 * 109.46762 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46582 * 299.99694 * 1 2 3 34 34 H 0.96999 * 119.99798 * 264.99857 * 4 2 1 35 35 H 0.97003 * 119.99943 * 5.77318 * 9 7 5 36 36 H 1.08992 * 109.46931 * 303.68850 * 10 9 7 37 37 H 1.09000 * 109.47203 * 63.69512 * 10 9 7 38 38 H 0.96997 * 119.99998 * 185.02516 * 15 14 12 39 39 H 1.09003 * 117.49971 * 0.02562 * 20 11 10 40 40 H 1.09003 * 117.50034 * 145.01840 * 20 11 10 41 41 H 1.09001 * 117.49696 * 214.97323 * 21 11 10 42 42 H 1.08990 * 117.50003 * 359.97238 * 21 11 10 43 43 H 1.09008 * 109.46903 * 300.00169 * 24 22 2 44 44 H 1.08999 * 109.47430 * 59.99675 * 24 22 2 45 45 H 1.09001 * 109.47351 * 180.02562 * 25 24 22 46 46 H 1.09008 * 109.46999 * 299.99738 * 25 24 22 47 47 H 1.08999 * 109.46907 * 179.97438 * 26 25 24 48 48 H 1.09006 * 109.47063 * 60.00687 * 26 25 24 49 49 H 1.09003 * 109.47261 * 179.97438 * 29 27 26 50 50 H 1.09000 * 109.47828 * 300.00186 * 29 27 26 51 51 H 1.09005 * 109.47015 * 60.00238 * 29 27 26 52 52 H 1.09004 * 109.47597 * 59.99848 * 30 22 2 53 53 H 1.09001 * 109.47232 * 300.00269 * 30 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1470 -0.0181 -2.3572 6 8 1.8580 1.1592 -2.4117 7 6 2.6446 -0.7227 -3.5777 8 8 3.0183 -1.8748 -3.5032 9 7 2.6783 -0.0786 -4.7610 10 6 3.0451 -0.8041 -5.9797 11 6 3.0955 0.1708 -7.1579 12 6 1.8543 0.9988 -7.3701 13 1 1.9374 2.0146 -7.7273 14 6 0.6127 0.4594 -7.1080 15 7 0.4914 -0.8292 -6.8749 16 14 -0.8971 1.5592 -7.0840 17 1 -0.4946 2.9589 -7.3739 18 1 -1.8620 1.0976 -8.1139 19 1 -1.5347 1.4953 -5.7443 20 6 3.8767 -0.2622 -8.4002 21 6 4.4424 0.8217 -7.4791 22 6 2.0401 -0.7213 1.2492 23 1 3.1301 -0.7216 1.2488 24 6 1.5302 -2.1638 1.2491 25 6 2.0397 -2.8849 2.4986 26 6 1.5294 -2.1636 3.7476 27 6 2.0393 -0.7211 3.7476 28 1 1.6761 -0.2073 4.6376 29 6 3.5693 -0.7211 3.7481 30 6 1.5302 -0.0002 2.4984 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3632 0.5138 0.8900 34 1 2.2490 -1.6317 -1.1528 35 1 2.4597 0.8654 -4.8057 36 1 4.0238 -1.2650 -5.8475 37 1 2.3032 -1.5773 -6.1795 38 1 -0.3888 -1.2210 -6.7628 39 1 4.3544 -1.2417 -8.3783 40 1 3.4931 0.0521 -9.3709 41 1 4.4307 1.8487 -7.8443 42 1 5.2924 0.5558 -6.8509 43 1 0.4401 -2.1638 1.2491 44 1 1.8934 -2.6776 0.3591 45 1 1.6768 -3.9128 2.4983 46 1 3.1298 -2.8849 2.4989 47 1 1.8921 -2.6776 4.6377 48 1 0.4393 -2.1636 3.7473 49 1 3.9327 0.3066 3.7477 50 1 3.9325 -1.2348 4.6382 51 1 3.9330 -1.2350 2.8583 52 1 0.4402 -0.0001 2.4985 53 1 1.8935 1.0275 2.4984 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325605624.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:04 Heat of formation + Delta-G solvation = -91.003325 kcal Electronic energy + Delta-G solvation = -30305.630673 eV Core-core repulsion = 26369.178265 eV Total energy + Delta-G solvation = -3936.452407 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.77548 -40.57272 -39.47048 -38.44430 -36.79382 -34.90869 -34.16329 -33.02608 -32.45312 -29.65954 -28.51635 -27.65746 -27.48074 -25.83958 -24.11460 -23.31789 -22.94573 -21.36391 -21.21264 -21.08247 -19.61870 -19.21460 -18.10726 -17.82484 -17.02291 -16.80215 -16.60000 -16.40620 -16.08850 -15.79656 -15.43214 -15.32474 -15.18031 -14.79748 -14.71478 -14.39017 -14.12988 -13.94297 -13.63188 -13.50729 -13.41979 -13.14651 -13.01685 -12.93481 -12.69779 -12.65219 -12.56934 -12.38130 -12.31423 -12.07747 -12.06077 -11.77939 -11.68838 -11.44686 -11.17884 -11.10626 -10.84369 -10.81776 -10.70092 -10.56640 -10.27491 -10.16700 -9.83285 -8.07652 -6.21220 0.44886 1.36913 1.44201 1.46468 1.51550 2.25613 2.38438 2.76938 3.04045 3.54217 3.59435 3.68417 3.72531 3.79446 4.08510 4.20371 4.21397 4.25161 4.41427 4.45413 4.49273 4.49697 4.54684 4.62865 4.69396 4.69798 4.72782 4.75180 4.87000 4.92626 4.96621 4.98503 5.04717 5.06372 5.15490 5.17815 5.20550 5.26158 5.29146 5.33018 5.36621 5.43428 5.46453 5.49349 5.53356 5.56218 5.58641 5.69165 5.88033 6.06490 6.34139 6.53517 6.78781 6.86535 7.10523 7.41562 8.87606 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017273 B = 0.002697 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.614844 B =10379.961131 C =11112.000694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.142 3.858 3 H 0.079 0.921 4 N -0.685 5.685 5 C 0.511 3.489 6 O -0.545 6.545 7 C 0.490 3.510 8 O -0.563 6.563 9 N -0.655 5.655 10 C 0.170 3.830 11 C 0.004 3.996 12 C -0.506 4.506 13 H 0.057 0.943 14 C 0.039 3.961 15 N -0.892 5.892 16 Si 0.940 3.060 17 H -0.266 1.266 18 H -0.281 1.281 19 H -0.288 1.288 20 C -0.190 4.190 21 C -0.188 4.188 22 C -0.084 4.084 23 H 0.079 0.921 24 C -0.121 4.121 25 C -0.119 4.119 26 C -0.112 4.112 27 C -0.087 4.087 28 H 0.078 0.922 29 C -0.153 4.153 30 C -0.106 4.106 31 H 0.032 0.968 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.415 0.585 35 H 0.410 0.590 36 H 0.039 0.961 37 H 0.084 0.916 38 H 0.260 0.740 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.054 0.946 45 H 0.064 0.936 46 H 0.064 0.936 47 H 0.066 0.934 48 H 0.064 0.936 49 H 0.052 0.948 50 H 0.057 0.943 51 H 0.055 0.945 52 H 0.075 0.925 53 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.107 -1.996 22.476 22.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.038 3.962 3 H 0.097 0.903 4 N -0.339 5.339 5 C 0.292 3.708 6 O -0.422 6.422 7 C 0.270 3.730 8 O -0.444 6.444 9 N -0.303 5.303 10 C 0.047 3.953 11 C 0.003 3.997 12 C -0.544 4.544 13 H 0.075 0.925 14 C -0.163 4.163 15 N -0.529 5.529 16 Si 0.767 3.233 17 H -0.191 1.191 18 H -0.207 1.207 19 H -0.214 1.214 20 C -0.228 4.228 21 C -0.225 4.225 22 C -0.103 4.103 23 H 0.097 0.903 24 C -0.158 4.158 25 C -0.156 4.156 26 C -0.150 4.150 27 C -0.106 4.106 28 H 0.096 0.904 29 C -0.210 4.210 30 C -0.144 4.144 31 H 0.051 0.949 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.253 0.747 35 H 0.246 0.754 36 H 0.058 0.942 37 H 0.102 0.898 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.105 0.895 43 H 0.091 0.909 44 H 0.072 0.928 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.085 0.915 48 H 0.083 0.917 49 H 0.071 0.929 50 H 0.076 0.924 51 H 0.074 0.926 52 H 0.094 0.906 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.009 -2.091 22.567 22.753 hybrid contribution -0.863 0.433 -0.685 1.183 sum 1.146 -1.658 21.882 21.975 Atomic orbital electron populations 1.22271 0.94578 1.02932 1.02413 1.21274 0.94834 0.96944 0.83107 0.90280 1.45938 1.64528 1.15058 1.08344 1.20164 0.78793 0.86715 0.85132 1.90720 1.49930 1.16421 1.85161 1.20295 0.80569 0.86742 0.85360 1.90650 1.49642 1.17883 1.86236 1.45680 1.63862 1.14513 1.06221 1.20918 0.97843 0.95031 0.81506 1.19234 0.90619 0.97096 0.92731 1.20725 0.90011 0.98600 1.45047 0.92458 1.25488 1.00975 0.95752 0.94043 1.69959 1.23620 1.11151 1.48143 0.85765 0.80266 0.79997 0.77275 1.19069 1.20669 1.21423 1.22935 1.06041 0.97841 0.96027 1.22978 0.97866 0.97226 1.04447 1.21387 1.00947 0.95410 0.92547 0.90312 1.21689 1.01527 0.94346 0.98266 1.21541 1.01023 0.98918 0.94116 1.21557 1.00697 0.95076 0.97639 1.21061 0.95808 0.96083 0.97635 0.90402 1.21964 0.95487 1.01661 1.01923 1.21625 1.01383 0.98793 0.92622 0.94916 0.91229 0.88838 0.74680 0.75422 0.94248 0.89790 0.93029 0.90130 0.90450 0.89901 0.89503 0.90944 0.92763 0.91688 0.91762 0.91489 0.91736 0.92921 0.92380 0.92577 0.90624 0.91572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 8.78 71.98 0.63 -2.91 16 2 C 0.14 3.19 2.40 44.99 0.11 3.29 16 3 H 0.08 2.00 7.58 -2.39 -0.02 1.98 16 4 N -0.68 -19.40 4.99 -443.84 -2.22 -21.62 16 5 C 0.51 19.00 7.85 87.27 0.69 19.69 16 6 O -0.54 -22.45 16.15 -3.24 -0.05 -22.51 16 7 C 0.49 20.77 7.88 87.27 0.69 21.46 16 8 O -0.56 -25.06 16.48 -3.24 -0.05 -25.11 16 9 N -0.66 -29.52 5.27 -464.43 -2.45 -31.97 16 10 C 0.17 8.03 4.75 86.38 0.41 8.44 16 11 C 0.00 0.18 2.00 -52.92 -0.11 0.08 16 12 C -0.51 -26.11 8.27 25.60 0.21 -25.90 16 13 H 0.06 2.97 7.84 -2.91 -0.02 2.94 16 14 C 0.04 2.05 5.13 84.65 0.43 2.49 16 15 N -0.89 -48.33 10.75 21.45 0.23 -48.10 16 16 Si 0.94 42.65 29.55 68.60 2.03 44.67 16 17 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 19 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 20 C -0.19 -8.06 9.96 30.62 0.30 -7.76 16 21 C -0.19 -7.55 9.92 30.62 0.30 -7.25 16 22 C -0.08 -1.36 1.91 -10.80 -0.02 -1.38 16 23 H 0.08 1.34 6.43 -2.38 -0.02 1.33 16 24 C -0.12 -1.85 4.68 30.59 0.14 -1.70 16 25 C -0.12 -1.52 5.65 30.59 0.17 -1.35 16 26 C -0.11 -1.23 5.45 30.59 0.17 -1.06 16 27 C -0.09 -0.98 3.19 -10.81 -0.03 -1.01 16 28 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 29 C -0.15 -1.81 8.50 71.98 0.61 -1.20 16 30 C -0.11 -1.38 4.37 30.57 0.13 -1.24 16 31 H 0.03 0.90 8.14 -2.39 -0.02 0.89 16 32 H 0.07 1.39 6.43 -2.39 -0.02 1.37 16 33 H 0.09 1.53 6.43 -2.39 -0.02 1.52 16 34 H 0.41 10.91 6.35 -92.71 -0.59 10.33 16 35 H 0.41 18.87 7.41 -92.71 -0.69 18.19 16 36 H 0.04 1.78 8.06 -2.39 -0.02 1.76 16 37 H 0.08 4.51 6.04 -2.39 -0.01 4.49 16 38 H 0.26 13.73 8.32 -92.71 -0.77 12.96 16 39 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 40 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 41 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 42 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 43 H 0.07 1.08 6.43 -2.38 -0.02 1.07 16 44 H 0.05 0.93 6.51 -2.39 -0.02 0.92 16 45 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.06 0.85 6.43 -2.38 -0.02 0.83 16 47 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 49 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 51 H 0.06 0.74 4.81 -2.38 -0.01 0.73 16 52 H 0.08 0.90 6.43 -2.38 -0.02 0.89 16 53 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -59.55 404.39 1.98 -57.56 By element: Atomic # 1 Polarization: 44.75 SS G_CDS: -0.35 Total: 44.39 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: 4.85 Total: 2.67 kcal Atomic # 7 Polarization: -97.25 SS G_CDS: -4.43 Total: -101.68 kcal Atomic # 8 Polarization: -47.51 SS G_CDS: -0.11 Total: -47.62 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Total: -59.55 1.98 -57.56 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325605624.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.442 kcal (2) G-P(sol) polarization free energy of solvation -59.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds