Wall clock time and date at job start Tue Mar 31 2020 20:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47118 * 2 1 4 4 N 1.46496 * 109.46857 * 239.99776 * 2 1 3 5 5 C 1.34773 * 120.00144 * 85.00289 * 4 2 1 6 6 O 1.21351 * 119.99770 * 359.97438 * 5 4 2 7 7 C 1.49451 * 120.00315 * 179.97438 * 5 4 2 8 8 O 1.21351 * 119.99802 * 354.94705 * 7 5 4 9 9 N 1.34780 * 120.00228 * 174.94608 * 7 5 4 10 10 C 1.46495 * 119.99762 * 185.06223 * 9 7 5 11 11 C 1.53004 * 109.47170 * 185.00541 * 10 9 7 12 12 C 1.50694 * 115.55300 * 269.61183 * 11 10 9 13 13 H 1.07995 * 120.00169 * 95.24444 * 12 11 10 14 14 C 1.37881 * 119.99719 * 275.24512 * 12 11 10 15 15 N 1.31510 * 120.00241 * 5.14285 * 14 12 11 16 16 Si 1.86798 * 119.99901 * 185.14580 * 14 12 11 17 17 H 1.48507 * 109.47335 * 59.99677 * 16 14 12 18 18 H 1.48498 * 109.47254 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47176 * 299.99941 * 16 14 12 20 20 C 1.53003 * 117.49690 * 123.89681 * 11 10 9 21 21 C 1.52999 * 117.49192 * 55.27698 * 11 10 9 22 22 C 1.53000 * 109.47347 * 119.99651 * 2 1 3 23 23 H 1.08997 * 109.46806 * 59.99627 * 22 2 1 24 24 C 1.52997 * 109.47347 * 179.97438 * 22 2 1 25 25 C 1.53000 * 109.47023 * 180.02562 * 24 22 2 26 26 C 1.53001 * 109.47146 * 299.99699 * 25 24 22 27 27 C 1.52997 * 109.46914 * 60.00234 * 26 25 24 28 28 H 1.09005 * 109.47171 * 179.97438 * 27 26 25 29 29 C 1.52998 * 109.47016 * 59.99850 * 27 26 25 30 30 C 1.53000 * 109.47347 * 300.00040 * 27 26 25 31 31 H 1.09000 * 109.47228 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47171 * 300.00096 * 1 2 3 33 33 H 1.08994 * 109.47311 * 59.99947 * 1 2 3 34 34 H 0.97003 * 120.00049 * 264.99533 * 4 2 1 35 35 H 0.96995 * 119.99816 * 5.06034 * 9 7 5 36 36 H 1.08999 * 109.47440 * 305.00963 * 10 9 7 37 37 H 1.09002 * 109.47617 * 65.00958 * 10 9 7 38 38 H 0.96998 * 120.00446 * 185.00185 * 15 14 12 39 39 H 1.08991 * 117.49875 * 0.02562 * 20 11 10 40 40 H 1.09000 * 117.49545 * 145.02446 * 20 11 10 41 41 H 1.09005 * 117.49525 * 214.97437 * 21 11 10 42 42 H 1.08992 * 117.50388 * 359.97438 * 21 11 10 43 43 H 1.09005 * 109.46874 * 59.99889 * 24 22 2 44 44 H 1.09005 * 109.47171 * 300.00253 * 24 22 2 45 45 H 1.09000 * 109.46669 * 180.02562 * 25 24 22 46 46 H 1.08994 * 109.47200 * 60.00388 * 25 24 22 47 47 H 1.09005 * 109.47227 * 300.00601 * 26 25 24 48 48 H 1.08994 * 109.47362 * 180.02562 * 26 25 24 49 49 H 1.09004 * 109.46985 * 60.00242 * 29 27 26 50 50 H 1.08995 * 109.47465 * 299.99536 * 29 27 26 51 51 H 1.09004 * 109.47059 * 179.97438 * 29 27 26 52 52 H 1.09000 * 109.47564 * 180.02562 * 30 27 26 53 53 H 1.09005 * 109.47224 * 299.99897 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 -1.1961 5 6 2.1470 -0.0184 -2.3571 6 8 1.8580 1.1590 -2.4117 7 6 2.6456 -0.7228 -3.5772 8 8 3.0212 -1.8743 -3.5021 9 7 2.6782 -0.0792 -4.7610 10 6 3.0612 -0.8010 -5.9768 11 6 3.1383 0.1793 -7.1491 12 6 1.8622 0.3602 -7.9300 13 1 1.1966 1.1775 -7.6950 14 6 1.5446 -0.5177 -8.9446 15 7 2.3020 -1.5700 -9.1648 16 14 0.0385 -0.2124 -10.0066 17 1 0.1748 1.0967 -10.6944 18 1 -0.0810 -1.2927 -11.0185 19 1 -1.1755 -0.1981 -9.1514 20 6 4.4567 0.2543 -7.9218 21 6 4.0490 1.3986 -6.9915 22 6 2.0400 -0.7212 1.2493 23 1 1.6766 -1.7488 1.2493 24 6 3.5700 -0.7217 1.2489 25 6 4.0800 -1.4435 2.4979 26 6 3.5706 -0.7223 3.7474 27 6 2.0406 -0.7217 3.7478 28 1 1.6776 -0.2083 4.6382 29 6 1.5301 -2.1640 3.7475 30 6 1.5305 0.0000 2.4988 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 2.2490 -1.6318 -1.1525 35 1 2.4480 0.8619 -4.8078 36 1 4.0346 -1.2691 -5.8301 37 1 2.3180 -1.5684 -6.1933 38 1 2.1213 -2.1477 -9.9228 39 1 5.2690 -0.3950 -7.5953 40 1 4.4013 0.4344 -8.9954 41 1 3.7254 2.3314 -7.4532 42 1 4.5929 1.5026 -6.0527 43 1 3.9337 0.3059 1.2486 44 1 3.9330 -1.2359 0.3589 45 1 5.1700 -1.4434 2.4978 46 1 3.7163 -2.4709 2.4977 47 1 3.9342 0.3053 3.7475 48 1 3.9342 -1.2361 4.6372 49 1 1.8934 -2.6782 4.6374 50 1 1.8929 -2.6778 2.8574 51 1 0.4400 -2.1636 3.7482 52 1 0.4405 0.0008 2.4992 53 1 1.8942 1.0276 2.4989 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325605625.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:08 Heat of formation + Delta-G solvation = -97.244503 kcal Electronic energy + Delta-G solvation = -29729.880762 eV Core-core repulsion = 25793.157717 eV Total energy + Delta-G solvation = -3936.723045 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.81042 -40.54277 -39.51671 -38.50663 -36.79443 -35.05936 -33.96085 -32.94403 -32.62904 -29.82714 -28.78399 -27.64512 -27.39196 -25.68557 -23.98454 -23.00326 -22.93460 -21.65948 -21.33698 -21.22174 -19.71128 -19.35471 -18.03629 -17.89095 -17.04172 -16.86428 -16.62353 -16.53881 -16.06642 -15.67068 -15.55337 -15.21651 -14.97658 -14.88181 -14.58225 -14.46488 -14.36497 -13.82506 -13.67222 -13.61565 -13.42070 -13.31407 -13.00474 -12.86045 -12.80299 -12.63580 -12.53556 -12.39987 -12.33962 -12.10571 -12.05951 -11.86079 -11.74617 -11.54540 -11.11737 -10.94416 -10.91301 -10.86056 -10.67219 -10.48362 -10.25191 -10.10135 -10.03656 -8.13084 -6.26019 0.37720 1.36867 1.43472 1.43958 1.51084 2.17334 2.42141 2.68887 3.15904 3.40047 3.53551 3.57436 3.76853 3.80894 4.12918 4.17409 4.20729 4.29098 4.41532 4.47763 4.51534 4.51996 4.54190 4.56729 4.63479 4.68425 4.70144 4.79700 4.86711 4.88384 4.92997 4.98422 5.02282 5.06673 5.15918 5.17663 5.23165 5.24094 5.26576 5.31611 5.33533 5.37351 5.42035 5.52029 5.54590 5.57652 5.62252 5.68663 5.74972 6.01031 6.34545 6.44094 6.76215 6.82896 6.99611 7.43761 8.95000 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.021680 B = 0.002197 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.173425 B =12742.384017 C =13204.434876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.143 3.857 3 H 0.079 0.921 4 N -0.682 5.682 5 C 0.516 3.484 6 O -0.541 6.541 7 C 0.494 3.506 8 O -0.555 6.555 9 N -0.675 5.675 10 C 0.177 3.823 11 C 0.001 3.999 12 C -0.512 4.512 13 H 0.057 0.943 14 C 0.027 3.973 15 N -0.904 5.904 16 Si 0.948 3.052 17 H -0.271 1.271 18 H -0.286 1.286 19 H -0.275 1.275 20 C -0.151 4.151 21 C -0.178 4.178 22 C -0.085 4.085 23 H 0.088 0.912 24 C -0.117 4.117 25 C -0.119 4.119 26 C -0.114 4.114 27 C -0.088 4.088 28 H 0.077 0.923 29 C -0.152 4.152 30 C -0.105 4.105 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.039 0.961 34 H 0.416 0.584 35 H 0.414 0.586 36 H 0.048 0.952 37 H 0.043 0.957 38 H 0.261 0.739 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.056 0.944 44 H 0.053 0.947 45 H 0.059 0.941 46 H 0.068 0.932 47 H 0.059 0.941 48 H 0.066 0.934 49 H 0.055 0.945 50 H 0.058 0.942 51 H 0.056 0.944 52 H 0.078 0.922 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.204 1.131 27.274 27.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.040 3.960 3 H 0.097 0.903 4 N -0.335 5.335 5 C 0.296 3.704 6 O -0.418 6.418 7 C 0.275 3.725 8 O -0.435 6.435 9 N -0.326 5.326 10 C 0.054 3.946 11 C 0.000 4.000 12 C -0.549 4.549 13 H 0.075 0.925 14 C -0.174 4.174 15 N -0.541 5.541 16 Si 0.774 3.226 17 H -0.196 1.196 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.189 4.189 21 C -0.216 4.216 22 C -0.104 4.104 23 H 0.106 0.894 24 C -0.154 4.154 25 C -0.156 4.156 26 C -0.152 4.152 27 C -0.106 4.106 28 H 0.095 0.905 29 C -0.209 4.209 30 C -0.143 4.143 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.058 0.942 34 H 0.253 0.747 35 H 0.251 0.749 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.087 0.913 47 H 0.078 0.922 48 H 0.084 0.916 49 H 0.074 0.926 50 H 0.077 0.923 51 H 0.076 0.924 52 H 0.096 0.904 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.182 0.950 27.193 27.210 hybrid contribution -0.569 -0.110 -1.295 1.419 sum -0.751 0.840 25.898 25.922 Atomic orbital electron populations 1.22227 0.94170 1.02962 1.02755 1.21299 0.94799 0.97062 0.82871 0.90290 1.45866 1.64253 1.15052 1.08314 1.19941 0.78940 0.86663 0.84833 1.90737 1.49876 1.16114 1.85070 1.20480 0.80013 0.86694 0.85316 1.90706 1.48595 1.18056 1.86115 1.45952 1.65072 1.15125 1.06430 1.20901 0.97829 0.94063 0.81815 1.19077 0.91380 0.94840 0.94709 1.20681 1.05001 1.11895 1.17348 0.92526 1.25660 0.99032 0.94109 0.98612 1.70094 1.40868 1.14301 1.28819 0.85770 0.80333 0.77786 0.78683 1.19587 1.21156 1.19990 1.22479 0.98366 1.01328 0.96745 1.22973 1.04682 0.93399 1.00520 1.21429 0.95648 1.00600 0.92705 0.89353 1.21585 0.94827 1.00782 0.98227 1.21543 1.00147 0.99758 0.94154 1.21570 0.95415 1.00547 0.97621 1.21073 0.95197 0.96617 0.97754 0.90508 1.21952 1.01043 0.95966 1.01947 1.21628 1.01196 0.98952 0.92557 0.91445 0.88936 0.94215 0.74663 0.74923 0.93405 0.93817 0.92962 0.90667 0.91569 0.89596 0.89210 0.92555 0.92851 0.92221 0.91310 0.92250 0.91558 0.92637 0.92339 0.92448 0.90351 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.13 71.98 0.66 -2.13 16 2 C 0.14 2.63 2.16 44.99 0.10 2.73 16 3 H 0.08 1.70 7.58 -2.39 -0.02 1.68 16 4 N -0.68 -16.00 4.38 -443.88 -1.94 -17.94 16 5 C 0.52 16.11 7.85 87.27 0.69 16.80 16 6 O -0.54 -18.79 16.15 -3.25 -0.05 -18.84 16 7 C 0.49 18.21 7.88 87.27 0.69 18.90 16 8 O -0.56 -22.43 16.47 -3.25 -0.05 -22.48 16 9 N -0.68 -26.53 5.40 -464.41 -2.51 -29.04 16 10 C 0.18 8.08 5.71 86.38 0.49 8.57 16 11 C 0.00 0.04 1.46 -52.93 -0.08 -0.04 16 12 C -0.51 -26.97 8.77 25.60 0.22 -26.75 16 13 H 0.06 2.96 7.82 -2.91 -0.02 2.94 16 14 C 0.03 1.45 5.40 84.66 0.46 1.90 16 15 N -0.90 -50.70 12.91 21.45 0.28 -50.42 16 16 Si 0.95 42.75 29.54 68.60 2.03 44.78 16 17 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 18 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 20 C -0.15 -6.81 9.38 30.60 0.29 -6.53 16 21 C -0.18 -7.18 9.50 30.59 0.29 -6.89 16 22 C -0.09 -1.13 1.55 -10.79 -0.02 -1.15 16 23 H 0.09 1.09 6.43 -2.39 -0.02 1.07 16 24 C -0.12 -1.74 5.05 30.59 0.15 -1.59 16 25 C -0.12 -1.47 5.65 30.59 0.17 -1.30 16 26 C -0.11 -1.20 5.45 30.59 0.17 -1.03 16 27 C -0.09 -0.84 3.19 -10.80 -0.03 -0.87 16 28 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 29 C -0.15 -1.41 8.50 71.98 0.61 -0.80 16 30 C -0.11 -1.12 4.38 30.59 0.13 -0.99 16 31 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.09 1.16 6.43 -2.38 -0.02 1.14 16 33 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.42 8.98 7.87 -92.71 -0.73 8.25 16 35 H 0.41 15.62 7.70 -92.71 -0.71 14.91 16 36 H 0.05 2.18 7.83 -2.39 -0.02 2.16 16 37 H 0.04 2.27 8.04 -2.39 -0.02 2.25 16 38 H 0.26 14.10 8.32 -92.71 -0.77 13.33 16 39 H 0.07 3.20 8.03 -2.39 -0.02 3.18 16 40 H 0.07 3.20 8.14 -2.39 -0.02 3.19 16 41 H 0.09 3.38 8.14 -2.38 -0.02 3.36 16 42 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 43 H 0.06 0.92 8.14 -2.38 -0.02 0.91 16 44 H 0.05 0.93 7.44 -2.38 -0.02 0.92 16 45 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.07 0.82 6.43 -2.39 -0.02 0.80 16 47 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 48 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 50 H 0.06 0.59 4.81 -2.39 -0.01 0.58 16 51 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 52 H 0.08 0.71 6.43 -2.39 -0.02 0.70 16 53 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 Total: -1.00 -61.30 414.16 2.21 -59.10 By element: Atomic # 1 Polarization: 36.54 SS G_CDS: -0.54 Total: 36.01 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: 4.99 Total: -1.16 kcal Atomic # 7 Polarization: -93.23 SS G_CDS: -4.17 Total: -97.40 kcal Atomic # 8 Polarization: -41.22 SS G_CDS: -0.11 Total: -41.33 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -61.30 2.21 -59.10 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325605625.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.146 kcal (2) G-P(sol) polarization free energy of solvation -61.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds