Wall clock time and date at job start Tue Mar 31 2020 20:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.47335 * 2 1 4 4 N 1.46496 * 109.46886 * 239.99431 * 2 1 3 5 5 C 1.34779 * 119.99904 * 85.00560 * 4 2 1 6 6 O 1.21354 * 119.99843 * 359.97438 * 5 4 2 7 7 C 1.49444 * 120.00019 * 179.97438 * 5 4 2 8 8 O 1.21347 * 120.00148 * 4.75638 * 7 5 4 9 9 N 1.34778 * 120.00189 * 184.47188 * 7 5 4 10 10 C 1.46499 * 120.00292 * 175.50525 * 9 7 5 11 11 C 1.53005 * 109.47057 * 185.04977 * 10 9 7 12 12 C 1.50697 * 115.55155 * 55.30470 * 11 10 9 13 13 H 1.08001 * 119.99710 * 273.88714 * 12 11 10 14 14 C 1.37875 * 120.00113 * 93.89096 * 12 11 10 15 15 N 1.31509 * 120.00264 * 4.67915 * 14 12 11 16 16 Si 1.86805 * 119.99864 * 184.67548 * 14 12 11 17 17 H 1.48497 * 109.47081 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47137 * 120.00033 * 16 14 12 19 19 H 1.48497 * 109.47024 * 240.00292 * 16 14 12 20 20 C 1.52997 * 117.49578 * 269.62920 * 11 10 9 21 21 C 1.52999 * 117.49732 * 200.97350 * 11 10 9 22 22 C 1.52997 * 109.46595 * 119.99740 * 2 1 3 23 23 H 1.09004 * 109.47088 * 179.97438 * 22 2 1 24 24 C 1.53007 * 109.47320 * 59.99929 * 22 2 1 25 25 C 1.53002 * 109.47062 * 179.97438 * 24 22 2 26 26 C 1.52994 * 109.47091 * 60.00007 * 25 24 22 27 27 C 1.53001 * 109.47428 * 299.99776 * 26 25 24 28 28 H 1.09004 * 109.46803 * 300.00118 * 27 26 25 29 29 C 1.52999 * 109.47313 * 180.02562 * 27 26 25 30 30 C 1.52997 * 109.47060 * 59.99842 * 27 26 25 31 31 H 1.09000 * 109.47335 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47121 * 300.00305 * 1 2 3 33 33 H 1.08997 * 109.46535 * 60.00130 * 1 2 3 34 34 H 0.97004 * 120.00193 * 265.00302 * 4 2 1 35 35 H 0.97009 * 119.99860 * 355.51097 * 9 7 5 36 36 H 1.08999 * 109.46927 * 305.04307 * 10 9 7 37 37 H 1.08995 * 109.47278 * 65.04694 * 10 9 7 38 38 H 0.96997 * 120.00049 * 185.00235 * 15 14 12 39 39 H 1.09002 * 117.50356 * 0.02562 * 20 11 10 40 40 H 1.09004 * 117.49647 * 145.02017 * 20 11 10 41 41 H 1.08999 * 117.49972 * 214.97718 * 21 11 10 42 42 H 1.09011 * 117.49832 * 359.97438 * 21 11 10 43 43 H 1.08995 * 109.46713 * 299.99687 * 24 22 2 44 44 H 1.08998 * 109.47002 * 59.99674 * 24 22 2 45 45 H 1.09000 * 109.46809 * 180.02562 * 25 24 22 46 46 H 1.09006 * 109.46871 * 299.99777 * 25 24 22 47 47 H 1.08994 * 109.47239 * 60.00405 * 26 25 24 48 48 H 1.09002 * 109.46999 * 180.02562 * 26 25 24 49 49 H 1.08997 * 109.47520 * 59.99548 * 29 27 26 50 50 H 1.09005 * 109.46935 * 180.02562 * 29 27 26 51 51 H 1.09000 * 109.46447 * 299.99841 * 29 27 26 52 52 H 1.09000 * 109.47067 * 180.02562 * 30 27 26 53 53 H 1.09004 * 109.47088 * 60.00450 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8582 1.1589 -2.4117 7 6 2.6458 -0.7229 -3.5771 8 8 2.8526 -1.9182 -3.5457 9 7 2.8603 -0.0316 -4.7141 10 6 3.4417 -0.7015 -5.8800 11 6 3.6954 0.3262 -6.9848 12 6 4.5480 1.5052 -6.5925 13 1 4.0939 2.3714 -6.1343 14 6 5.9079 1.4781 -6.8184 15 7 6.4480 0.4644 -7.4589 16 14 6.9831 2.8815 -6.2150 17 1 6.1388 3.8920 -5.5285 18 1 7.9961 2.3558 -5.2650 19 1 7.6690 3.5120 -7.3713 20 6 2.5709 0.5718 -7.9928 21 6 3.8261 -0.1945 -8.4175 22 6 2.0399 -0.7212 1.2493 23 1 3.1300 -0.7216 1.2491 24 6 1.5299 -2.1637 1.2494 25 6 2.0403 -2.8851 2.4984 26 6 1.5308 -2.1639 3.7478 27 6 2.0408 -0.7214 3.7478 28 1 3.1309 -0.7215 3.7474 29 6 1.5318 -0.0005 4.9976 30 6 1.5305 -0.0001 2.4988 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3632 0.5138 -0.8900 34 1 2.2490 -1.6319 -1.1525 35 1 2.6298 0.9095 -4.7603 36 1 4.3840 -1.1707 -5.5971 37 1 2.7514 -1.4627 -6.2434 38 1 7.4117 0.4092 -7.5545 39 1 1.6503 0.0016 -7.8688 40 1 2.4481 1.5862 -8.3725 41 1 4.5284 0.3160 -9.0764 42 1 3.7318 -1.2693 -8.5730 43 1 0.4399 -2.1636 1.2494 44 1 1.8932 -2.6776 0.3594 45 1 1.6773 -3.9129 2.4982 46 1 3.1303 -2.8851 2.4979 47 1 0.4408 -2.1640 3.7482 48 1 1.8948 -2.6776 4.6376 49 1 1.8957 -0.5145 5.8872 50 1 1.8949 1.0273 4.9973 51 1 0.4418 -0.0004 4.9983 52 1 1.8942 1.0274 2.4986 53 1 0.4405 0.0000 2.4992 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325605626.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:13 Heat of formation + Delta-G solvation = -98.424567 kcal Electronic energy + Delta-G solvation = -29674.753919 eV Core-core repulsion = 25737.979702 eV Total energy + Delta-G solvation = -3936.774217 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.80032 -40.45679 -39.42612 -38.47118 -36.77654 -35.09385 -33.93733 -33.32334 -32.68676 -29.70469 -28.72781 -27.46852 -27.25345 -25.87447 -24.04275 -22.93595 -22.87585 -21.47939 -21.18657 -21.05918 -20.23608 -19.43658 -18.06308 -17.79896 -17.08024 -16.69878 -16.60001 -16.34887 -16.02577 -15.72656 -15.62717 -15.28327 -15.04108 -14.94843 -14.85895 -14.42277 -14.19758 -13.89164 -13.67227 -13.49122 -13.44217 -13.17258 -12.95620 -12.87457 -12.83759 -12.74301 -12.55220 -12.39010 -12.37611 -12.07173 -11.98622 -11.84955 -11.59898 -11.39103 -11.25821 -11.05882 -11.04220 -10.81856 -10.70073 -10.40184 -10.29131 -10.14991 -9.91280 -8.12134 -6.25302 0.38727 1.37993 1.39091 1.42623 1.52034 2.18430 2.40663 2.72054 3.14292 3.43534 3.56732 3.60750 3.71934 3.81393 4.05681 4.20995 4.21255 4.24940 4.35859 4.45428 4.50374 4.56320 4.59220 4.62863 4.63209 4.67291 4.72767 4.77287 4.85740 4.90108 4.92764 4.97544 5.03467 5.04214 5.12698 5.18533 5.22171 5.29404 5.30248 5.33801 5.35583 5.38072 5.42603 5.48756 5.49255 5.54700 5.66989 5.72808 5.76860 6.02417 6.34802 6.46561 6.79388 6.81859 7.00721 7.43963 8.94075 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016409 B = 0.002371 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.009518 B =11807.952952 C =12469.367625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.077 0.923 4 N -0.685 5.685 5 C 0.513 3.487 6 O -0.541 6.541 7 C 0.494 3.506 8 O -0.557 6.557 9 N -0.668 5.668 10 C 0.173 3.827 11 C -0.010 4.010 12 C -0.503 4.503 13 H 0.056 0.944 14 C 0.028 3.972 15 N -0.902 5.902 16 Si 0.943 3.057 17 H -0.268 1.268 18 H -0.285 1.285 19 H -0.282 1.282 20 C -0.185 4.185 21 C -0.138 4.138 22 C -0.086 4.086 23 H 0.070 0.930 24 C -0.119 4.119 25 C -0.118 4.118 26 C -0.111 4.111 27 C -0.091 4.091 28 H 0.062 0.938 29 C -0.146 4.146 30 C -0.104 4.104 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.040 0.960 34 H 0.416 0.584 35 H 0.415 0.585 36 H 0.041 0.959 37 H 0.058 0.942 38 H 0.260 0.740 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.056 0.944 45 H 0.068 0.932 46 H 0.056 0.944 47 H 0.067 0.933 48 H 0.064 0.936 49 H 0.057 0.943 50 H 0.053 0.947 51 H 0.059 0.941 52 H 0.063 0.937 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.185 -4.703 23.043 26.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.038 3.962 3 H 0.095 0.905 4 N -0.338 5.338 5 C 0.294 3.706 6 O -0.419 6.419 7 C 0.275 3.725 8 O -0.437 6.437 9 N -0.317 5.317 10 C 0.050 3.950 11 C -0.011 4.011 12 C -0.541 4.541 13 H 0.075 0.925 14 C -0.173 4.173 15 N -0.540 5.540 16 Si 0.769 3.231 17 H -0.192 1.192 18 H -0.211 1.211 19 H -0.208 1.208 20 C -0.222 4.222 21 C -0.176 4.176 22 C -0.105 4.105 23 H 0.088 0.912 24 C -0.157 4.157 25 C -0.156 4.156 26 C -0.148 4.148 27 C -0.109 4.109 28 H 0.081 0.919 29 C -0.203 4.203 30 C -0.142 4.142 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.059 0.941 34 H 0.254 0.746 35 H 0.251 0.749 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.109 0.891 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.075 0.925 45 H 0.087 0.913 46 H 0.075 0.925 47 H 0.085 0.915 48 H 0.083 0.917 49 H 0.076 0.924 50 H 0.072 0.928 51 H 0.078 0.922 52 H 0.082 0.918 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.058 -4.730 22.895 26.305 hybrid contribution 1.217 0.647 -0.250 1.401 sum -10.841 -4.083 22.646 25.437 Atomic orbital electron populations 1.22253 0.93821 1.03182 1.02710 1.21260 0.95350 0.96737 0.82842 0.90510 1.45951 1.64435 1.15077 1.08378 1.20027 0.78891 0.86629 0.85074 1.90741 1.49871 1.16072 1.85170 1.20387 0.79804 0.87182 0.85128 1.90687 1.53128 1.14972 1.84895 1.45768 1.59310 1.15162 1.11470 1.20863 0.95584 0.93906 0.84657 1.19132 0.97875 0.96231 0.87823 1.20636 0.92087 1.01067 1.40294 0.92546 1.25619 0.99394 0.97924 0.94366 1.70113 1.11127 1.32144 1.40598 0.85740 0.79066 0.80245 0.78027 1.19224 1.21082 1.20771 1.23098 0.92304 1.00518 1.06318 1.22343 0.98602 0.97486 0.99172 1.21371 1.00528 0.95723 0.92912 0.91187 1.21689 1.01758 0.94052 0.98175 1.21514 1.00594 0.99179 0.94310 1.21580 1.01001 0.94742 0.97515 1.21109 1.00065 0.95177 0.94581 0.91933 1.21811 1.01443 1.00136 0.96943 1.21650 1.01689 0.98639 0.92251 0.90901 0.89102 0.94088 0.74601 0.74879 0.94035 0.92393 0.93126 0.89077 0.90236 0.91296 0.90664 0.90393 0.92531 0.91348 0.92504 0.91455 0.91712 0.92414 0.92792 0.92239 0.91823 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 8.78 71.98 0.63 -2.13 16 2 C 0.14 2.79 2.40 44.99 0.11 2.89 16 3 H 0.08 1.79 7.58 -2.39 -0.02 1.77 16 4 N -0.68 -17.01 4.99 -443.87 -2.22 -19.23 16 5 C 0.51 16.86 7.85 87.27 0.69 17.54 16 6 O -0.54 -19.91 16.15 -3.26 -0.05 -19.96 16 7 C 0.49 18.67 7.88 87.27 0.69 19.35 16 8 O -0.56 -22.49 16.49 -3.24 -0.05 -22.54 16 9 N -0.67 -26.92 5.35 -464.42 -2.48 -29.40 16 10 C 0.17 7.64 5.57 86.38 0.48 8.12 16 11 C -0.01 -0.46 1.74 -52.93 -0.09 -0.56 16 12 C -0.50 -26.28 8.31 25.60 0.21 -26.07 16 13 H 0.06 2.94 7.82 -2.91 -0.02 2.92 16 14 C 0.03 1.49 5.41 84.66 0.46 1.95 16 15 N -0.90 -50.39 11.87 21.45 0.25 -50.13 16 16 Si 0.94 43.13 29.54 68.60 2.03 45.15 16 17 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 18 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 19 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 20 C -0.19 -7.55 9.93 30.62 0.30 -7.25 16 21 C -0.14 -6.30 8.88 30.62 0.27 -6.03 16 22 C -0.09 -1.28 2.18 -10.79 -0.02 -1.30 16 23 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 24 C -0.12 -1.57 4.68 30.60 0.14 -1.43 16 25 C -0.12 -1.39 5.92 30.59 0.18 -1.21 16 26 C -0.11 -1.13 5.20 30.59 0.16 -0.97 16 27 C -0.09 -1.00 2.72 -10.79 -0.03 -1.03 16 28 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 29 C -0.15 -1.39 9.19 71.98 0.66 -0.73 16 30 C -0.10 -1.25 4.13 30.59 0.13 -1.12 16 31 H 0.07 1.08 6.43 -2.39 -0.02 1.07 16 32 H 0.09 1.16 6.43 -2.39 -0.02 1.15 16 33 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.42 9.51 6.35 -92.71 -0.59 8.92 16 35 H 0.41 16.68 7.63 -92.70 -0.71 15.97 16 36 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.06 2.38 8.10 -2.39 -0.02 2.36 16 38 H 0.26 13.94 8.32 -92.71 -0.77 13.17 16 39 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 40 H 0.08 3.23 8.14 -2.38 -0.02 3.21 16 41 H 0.07 3.49 7.60 -2.39 -0.02 3.48 16 42 H 0.07 3.19 8.14 -2.38 -0.02 3.17 16 43 H 0.08 0.92 6.43 -2.39 -0.02 0.91 16 44 H 0.06 0.83 6.51 -2.39 -0.02 0.81 16 45 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 47 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.06 0.61 8.14 -2.39 -0.02 0.60 16 49 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 50 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 51 H 0.06 0.51 8.14 -2.39 -0.02 0.50 16 52 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 53 H 0.08 0.82 6.43 -2.38 -0.02 0.80 16 Total: -1.00 -61.01 414.23 2.05 -58.95 By element: Atomic # 1 Polarization: 37.51 SS G_CDS: -0.39 Total: 37.12 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: 4.97 Total: 0.05 kcal Atomic # 7 Polarization: -94.32 SS G_CDS: -4.44 Total: -98.77 kcal Atomic # 8 Polarization: -42.40 SS G_CDS: -0.11 Total: -42.50 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -61.01 2.05 -58.95 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325605626.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.470 kcal (2) G-P(sol) polarization free energy of solvation -61.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds