Wall clock time and date at job start Tue Mar 31 2020 20:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08990 * 109.47332 * 2 1 4 4 N 1.46506 * 109.46732 * 240.00400 * 2 1 3 5 5 C 1.34772 * 120.00028 * 85.00352 * 4 2 1 6 6 O 1.21348 * 119.99910 * 359.97438 * 5 4 2 7 7 C 1.49443 * 119.99999 * 179.97438 * 5 4 2 8 8 O 1.21352 * 119.99970 * 0.02562 * 7 5 4 9 9 N 1.34781 * 120.00034 * 179.97438 * 7 5 4 10 10 C 1.46500 * 119.99779 * 180.02562 * 9 7 5 11 11 C 1.53005 * 109.47079 * 184.67234 * 10 9 7 12 12 C 1.50695 * 115.54946 * 298.09974 * 11 10 9 13 13 H 1.08007 * 120.00146 * 95.21217 * 12 11 10 14 14 C 1.37872 * 119.99989 * 275.20915 * 12 11 10 15 15 N 1.31518 * 120.00085 * 7.14150 * 14 12 11 16 16 Si 1.86805 * 120.00285 * 186.86357 * 14 12 11 17 17 H 1.48500 * 109.46967 * 270.27930 * 16 14 12 18 18 H 1.48506 * 109.46947 * 30.27456 * 16 14 12 19 19 H 1.48499 * 109.47350 * 150.27473 * 16 14 12 20 20 C 1.53005 * 117.49386 * 83.76524 * 11 10 9 21 21 C 1.53001 * 117.49819 * 152.42260 * 11 10 9 22 22 C 1.52999 * 109.46944 * 120.00754 * 2 1 3 23 23 H 1.09004 * 109.47646 * 59.99728 * 22 2 1 24 24 C 1.52997 * 109.47089 * 179.97438 * 22 2 1 25 25 C 1.52997 * 109.47400 * 179.97438 * 24 22 2 26 26 C 1.53006 * 109.47018 * 300.00107 * 25 24 22 27 27 C 1.52997 * 109.47122 * 59.99723 * 26 25 24 28 28 H 1.09002 * 109.47124 * 59.99818 * 27 26 25 29 29 C 1.52997 * 109.47002 * 179.97438 * 27 26 25 30 30 C 1.52997 * 109.47400 * 300.00043 * 27 26 25 31 31 H 1.09002 * 109.47372 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46899 * 299.99753 * 1 2 3 33 33 H 1.09005 * 109.46769 * 59.99182 * 1 2 3 34 34 H 0.97007 * 119.99731 * 265.00025 * 4 2 1 35 35 H 0.96991 * 119.99887 * 0.02562 * 9 7 5 36 36 H 1.08994 * 109.47274 * 64.67735 * 10 9 7 37 37 H 1.09001 * 109.47499 * 304.67037 * 10 9 7 38 38 H 0.96996 * 119.99328 * 355.10305 * 15 14 12 39 39 H 1.09001 * 117.49352 * 215.00336 * 20 11 10 40 40 H 1.09000 * 117.50306 * 0.02562 * 20 11 10 41 41 H 1.08991 * 117.50202 * 359.97438 * 21 11 10 42 42 H 1.08999 * 117.49206 * 144.97754 * 21 11 10 43 43 H 1.09004 * 109.47003 * 299.99644 * 24 22 2 44 44 H 1.08997 * 109.47538 * 59.99784 * 24 22 2 45 45 H 1.09005 * 109.47633 * 179.97438 * 25 24 22 46 46 H 1.09004 * 109.47314 * 59.99956 * 25 24 22 47 47 H 1.08997 * 109.46878 * 299.99363 * 26 25 24 48 48 H 1.09004 * 109.47063 * 179.97438 * 26 25 24 49 49 H 1.09005 * 109.46935 * 179.97438 * 29 27 26 50 50 H 1.08994 * 109.47147 * 300.00230 * 29 27 26 51 51 H 1.09004 * 109.46884 * 60.00463 * 29 27 26 52 52 H 1.08999 * 109.47291 * 300.00537 * 30 27 26 53 53 H 1.08999 * 109.47633 * 179.97438 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1470 -0.0181 -2.3572 6 8 1.8581 1.1592 -2.4116 7 6 2.6456 -0.7224 -3.5773 8 8 2.9341 -1.8999 -3.5229 9 7 2.7739 -0.0501 -4.7384 10 6 3.2621 -0.7407 -5.9346 11 6 3.4238 0.2667 -7.0748 12 6 2.1593 0.9577 -7.5158 13 1 1.9041 1.9262 -7.1116 14 6 1.3282 0.3535 -8.4351 15 7 1.5626 -0.8815 -8.8215 16 14 -0.1352 1.2865 -9.1261 17 1 -1.3218 1.0551 -8.2637 18 1 0.1753 2.7383 -9.1616 19 1 -0.4224 0.8080 -10.5022 20 6 4.7239 1.0717 -7.1271 21 6 4.4711 -0.0417 -8.1467 22 6 2.0400 -0.7214 1.2491 23 1 1.6766 -1.7491 1.2491 24 6 3.5700 -0.7220 1.2489 25 6 4.0800 -1.4428 2.4983 26 6 3.5705 -0.7208 3.7473 27 6 2.0405 -0.7202 3.7476 28 1 1.6768 -1.7478 3.7481 29 6 1.5311 0.0012 4.9970 30 6 1.5305 0.0006 2.4982 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5140 -0.8900 34 1 2.2490 -1.6318 -1.1528 35 1 2.5429 0.8909 -4.7819 36 1 2.5471 -1.5093 -6.2277 37 1 4.2253 -1.2035 -5.7194 38 1 2.3589 -1.3427 -8.5148 39 1 4.6645 2.1011 -7.4805 40 1 5.4642 0.8833 -6.3495 41 1 5.0452 -0.9619 -8.0394 42 1 4.2452 0.2549 -9.1709 43 1 3.9329 -1.2361 0.3588 44 1 3.9338 0.3055 1.2487 45 1 5.1700 -1.4437 2.4979 46 1 3.7163 -2.4704 2.4989 47 1 3.9343 0.3067 3.7468 48 1 3.9335 -1.2346 4.6375 49 1 0.4410 0.0020 4.9969 50 1 1.8944 -0.5127 5.8868 51 1 1.8948 1.0288 4.9968 52 1 1.8942 1.0281 2.4976 53 1 0.4405 0.0007 2.4981 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325605627.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:17 Heat of formation + Delta-G solvation = -107.596352 kcal Electronic energy + Delta-G solvation = -29680.204024 eV Core-core repulsion = 25743.032089 eV Total energy + Delta-G solvation = -3937.171935 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.83932 -40.43219 -39.49962 -38.72944 -36.82017 -35.17713 -33.96880 -33.31108 -32.86366 -29.84936 -28.78715 -27.31331 -26.99716 -25.72159 -24.03964 -23.10058 -22.41918 -21.65915 -21.53785 -21.29542 -20.59717 -19.58646 -18.44720 -17.99671 -17.11688 -16.75654 -16.65145 -16.12906 -15.74328 -15.61058 -15.53164 -15.33840 -15.16688 -14.82818 -14.63293 -14.49655 -14.43071 -14.29566 -13.94354 -13.68385 -13.52867 -13.21361 -12.92723 -12.86759 -12.73842 -12.67365 -12.45287 -12.40934 -12.24113 -12.15616 -11.95132 -11.86128 -11.69732 -11.54507 -11.31440 -11.07231 -10.90858 -10.76461 -10.62051 -10.47438 -10.32602 -10.28471 -10.11630 -8.55139 -6.30675 0.32562 1.32181 1.54593 1.61070 1.78493 2.12400 2.55665 2.63359 3.20484 3.24409 3.46539 3.51601 3.74182 3.80459 3.98387 4.06841 4.20213 4.24196 4.30856 4.33254 4.40636 4.40891 4.47563 4.56564 4.59112 4.61868 4.68659 4.71725 4.79599 4.82047 4.82535 4.89553 4.95608 5.03241 5.03923 5.11618 5.16221 5.20649 5.22977 5.23459 5.30211 5.32683 5.34105 5.39325 5.44341 5.47806 5.50510 5.64612 5.96522 6.11875 6.23512 6.39534 6.68896 6.73357 6.93820 7.51077 8.85065 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019940 B = 0.002283 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.903929 B =12261.273264 C =13058.565605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.143 3.857 3 H 0.078 0.922 4 N -0.681 5.681 5 C 0.516 3.484 6 O -0.541 6.541 7 C 0.494 3.506 8 O -0.556 6.556 9 N -0.669 5.669 10 C 0.169 3.831 11 C -0.026 4.026 12 C -0.579 4.579 13 H 0.048 0.952 14 C -0.017 4.017 15 N -0.928 5.928 16 Si 1.108 2.892 17 H -0.281 1.281 18 H -0.272 1.272 19 H -0.286 1.286 20 C -0.167 4.167 21 C -0.170 4.170 22 C -0.083 4.083 23 H 0.087 0.913 24 C -0.117 4.117 25 C -0.117 4.117 26 C -0.113 4.113 27 C -0.089 4.089 28 H 0.073 0.927 29 C -0.147 4.147 30 C -0.105 4.105 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.037 0.963 34 H 0.417 0.583 35 H 0.415 0.585 36 H 0.037 0.963 37 H 0.059 0.941 38 H 0.267 0.733 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.068 0.932 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.061 0.939 46 H 0.066 0.934 47 H 0.058 0.942 48 H 0.067 0.933 49 H 0.058 0.942 50 H 0.057 0.943 51 H 0.052 0.948 52 H 0.062 0.938 53 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.776 0.131 27.070 27.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.040 3.960 3 H 0.096 0.904 4 N -0.334 5.334 5 C 0.296 3.704 6 O -0.419 6.419 7 C 0.275 3.725 8 O -0.436 6.436 9 N -0.318 5.318 10 C 0.046 3.954 11 C -0.026 4.026 12 C -0.616 4.616 13 H 0.066 0.934 14 C -0.218 4.218 15 N -0.564 5.564 16 Si 0.932 3.068 17 H -0.208 1.208 18 H -0.197 1.197 19 H -0.211 1.211 20 C -0.204 4.204 21 C -0.208 4.208 22 C -0.102 4.102 23 H 0.105 0.895 24 C -0.155 4.155 25 C -0.154 4.154 26 C -0.151 4.151 27 C -0.107 4.107 28 H 0.091 0.909 29 C -0.204 4.204 30 C -0.143 4.143 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.056 0.944 34 H 0.254 0.746 35 H 0.251 0.749 36 H 0.055 0.945 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.102 0.898 40 H 0.112 0.888 41 H 0.105 0.895 42 H 0.086 0.914 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.085 0.915 47 H 0.076 0.924 48 H 0.085 0.915 49 H 0.077 0.923 50 H 0.077 0.923 51 H 0.071 0.929 52 H 0.081 0.919 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.468 0.000 26.073 26.077 hybrid contribution 1.417 -0.011 0.331 1.456 sum 1.885 -0.011 26.404 26.471 Atomic orbital electron populations 1.22236 0.94183 1.03009 1.02732 1.21300 0.94805 0.97055 0.82850 0.90351 1.45851 1.64243 1.15031 1.08239 1.19914 0.79027 0.86625 0.84868 1.90744 1.49867 1.16218 1.85033 1.20461 0.79833 0.86963 0.85273 1.90693 1.51179 1.16043 1.85668 1.45733 1.62509 1.15223 1.08352 1.20884 0.96895 0.94156 0.83513 1.19340 0.90533 0.97864 0.94911 1.21474 1.07249 1.05649 1.27266 0.93384 1.26950 1.03982 0.96080 0.94776 1.70816 1.27805 1.10883 1.46916 0.83025 0.72995 0.74742 0.76059 1.20767 1.19673 1.21128 1.22924 0.99658 0.96187 1.01605 1.22704 1.03711 0.99301 0.95061 1.21396 0.95684 1.00457 0.92689 0.89469 1.21593 0.94784 1.00795 0.98306 1.21507 1.00318 0.99506 0.94086 1.21603 0.95333 1.00584 0.97565 1.21103 0.95226 0.99922 0.94457 0.90904 1.21816 1.01193 1.00355 0.97027 1.21659 1.01187 0.99100 0.92315 0.91350 0.88853 0.94371 0.74582 0.74893 0.94479 0.92295 0.92263 0.89754 0.88834 0.89518 0.91358 0.92769 0.92599 0.92004 0.91545 0.92359 0.91476 0.92301 0.92346 0.92863 0.91915 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 9.13 71.98 0.66 -2.29 16 2 C 0.14 2.75 2.16 44.99 0.10 2.85 16 3 H 0.08 1.76 7.58 -2.39 -0.02 1.74 16 4 N -0.68 -16.50 4.38 -443.88 -1.94 -18.45 16 5 C 0.52 16.80 7.85 87.27 0.69 17.49 16 6 O -0.54 -19.89 16.14 -3.24 -0.05 -19.94 16 7 C 0.49 18.74 7.89 87.27 0.69 19.43 16 8 O -0.56 -22.55 16.48 -3.25 -0.05 -22.61 16 9 N -0.67 -27.42 5.45 -464.40 -2.53 -29.95 16 10 C 0.17 7.57 5.43 86.38 0.47 8.04 16 11 C -0.03 -1.20 0.99 -52.93 -0.05 -1.25 16 12 C -0.58 -30.57 8.43 25.60 0.22 -30.36 16 13 H 0.05 2.55 7.82 -2.91 -0.02 2.53 16 14 C -0.02 -0.93 5.39 84.65 0.46 -0.48 16 15 N -0.93 -54.24 13.57 21.45 0.29 -53.94 16 16 Si 1.11 49.58 29.91 68.60 2.05 51.63 16 17 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 18 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 19 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 20 C -0.17 -6.66 9.95 30.62 0.30 -6.35 16 21 C -0.17 -7.40 8.74 30.62 0.27 -7.13 16 22 C -0.08 -1.14 1.83 -10.79 -0.02 -1.16 16 23 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 24 C -0.12 -1.78 5.05 30.59 0.15 -1.62 16 25 C -0.12 -1.45 5.92 30.60 0.18 -1.26 16 26 C -0.11 -1.22 5.20 30.60 0.16 -1.06 16 27 C -0.09 -0.88 2.72 -10.80 -0.03 -0.91 16 28 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 29 C -0.15 -1.29 9.19 71.98 0.66 -0.63 16 30 C -0.10 -1.17 4.13 30.60 0.13 -1.04 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.09 1.25 6.43 -2.38 -0.02 1.23 16 33 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.42 9.18 7.86 -92.70 -0.73 8.45 16 35 H 0.41 17.13 7.69 -92.72 -0.71 16.42 16 36 H 0.04 1.89 7.82 -2.39 -0.02 1.87 16 37 H 0.06 2.46 8.11 -2.39 -0.02 2.45 16 38 H 0.27 15.53 6.19 -92.71 -0.57 14.96 16 39 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 40 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 41 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 42 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 43 H 0.05 0.95 7.44 -2.38 -0.02 0.93 16 44 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.06 0.77 8.14 -2.38 -0.02 0.76 16 46 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 48 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 50 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 51 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 52 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 53 H 0.08 0.76 6.43 -2.39 -0.02 0.74 16 Total: -1.00 -63.53 419.03 2.43 -61.10 By element: Atomic # 1 Polarization: 40.26 SS G_CDS: -0.35 Total: 39.90 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: 5.02 Total: -7.75 kcal Atomic # 7 Polarization: -98.16 SS G_CDS: -4.18 Total: -102.34 kcal Atomic # 8 Polarization: -42.44 SS G_CDS: -0.11 Total: -42.55 kcal Atomic # 14 Polarization: 49.58 SS G_CDS: 2.05 Total: 51.63 kcal Total: -63.53 2.43 -61.10 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325605627.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.498 kcal (2) G-P(sol) polarization free energy of solvation -63.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds