Wall clock time and date at job start Tue Mar 31 2020 20:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 108.85282 * 2 1 4 4 C 1.50478 * 108.79604 * 118.51277 * 2 1 3 5 5 C 1.54235 * 108.51543 * 214.87261 * 4 2 1 6 6 C 1.45383 * 112.56557 * 280.13337 * 5 4 2 7 7 C 1.54245 * 112.49391 * 61.62225 * 6 5 4 8 8 H 1.08996 * 109.62413 * 40.13110 * 7 6 5 9 9 N 1.46498 * 109.62584 * 160.51375 * 7 6 5 10 10 C 1.34772 * 120.00187 * 274.61527 * 9 7 6 11 11 O 1.21350 * 120.00030 * 0.02562 * 10 9 7 12 12 C 1.49453 * 119.99979 * 180.02562 * 10 9 7 13 13 O 1.21351 * 120.00177 * 6.79314 * 12 10 9 14 14 N 1.34772 * 119.99777 * 186.79475 * 12 10 9 15 15 C 1.46932 * 120.62923 * 178.28861 * 14 12 10 16 16 C 1.53196 * 108.77520 * 233.63035 * 15 14 12 17 17 C 1.53044 * 109.31190 * 305.36590 * 16 15 14 18 18 C 1.50701 * 109.45762 * 181.38550 * 17 16 15 19 19 H 1.07993 * 119.99987 * 354.14981 * 18 17 16 20 20 C 1.37881 * 119.99760 * 174.14859 * 18 17 16 21 21 N 1.31506 * 119.99631 * 159.54873 * 20 18 17 22 22 Si 1.86806 * 119.99893 * 339.54726 * 20 18 17 23 23 H 1.48502 * 109.46898 * 270.00144 * 22 20 18 24 24 H 1.48496 * 109.47113 * 30.00168 * 22 20 18 25 25 H 1.48500 * 109.46624 * 150.00061 * 22 20 18 26 26 C 1.53035 * 109.53733 * 61.36381 * 17 16 15 27 27 C 1.46925 * 120.63583 * 358.31254 * 14 12 10 28 28 C 1.50473 * 108.68673 * 280.32289 * 7 6 5 29 29 C 1.54065 * 108.87673 * 241.44082 * 2 1 3 30 30 H 1.08996 * 109.46732 * 178.55631 * 1 2 3 31 31 H 1.09003 * 109.46954 * 298.55864 * 1 2 3 32 32 H 1.08999 * 109.46495 * 58.55724 * 1 2 3 33 33 H 1.08996 * 109.62788 * 334.58615 * 4 2 1 34 34 H 1.09000 * 109.62329 * 94.97048 * 4 2 1 35 35 H 1.09006 * 108.89738 * 40.77119 * 5 4 2 36 36 H 1.09009 * 108.89311 * 159.35395 * 5 4 2 37 37 H 1.09005 * 108.68502 * 300.96078 * 6 5 4 38 38 H 1.08993 * 109.02012 * 182.52300 * 6 5 4 39 39 H 0.97006 * 119.99564 * 94.61714 * 9 7 6 40 40 H 1.08997 * 109.59117 * 113.84431 * 15 14 12 41 41 H 1.08998 * 109.58490 * 353.41619 * 15 14 12 42 42 H 1.08995 * 109.49544 * 185.41414 * 16 15 14 43 43 H 1.09006 * 109.49870 * 65.31662 * 16 15 14 44 44 H 1.08999 * 109.45506 * 301.35475 * 17 16 15 45 45 H 0.97001 * 120.00788 * 354.92453 * 21 20 18 46 46 H 1.09002 * 109.49970 * 58.58979 * 26 17 16 47 47 H 1.09007 * 109.49564 * 178.68758 * 26 17 16 48 48 H 1.09001 * 109.58619 * 246.15981 * 27 14 12 49 49 H 1.08999 * 109.58414 * 6.57589 * 27 14 12 50 50 H 1.08991 * 108.88090 * 214.82828 * 28 7 6 51 51 H 1.09005 * 108.87490 * 333.27790 * 28 7 6 52 52 H 1.09001 * 108.81164 * 76.74541 * 29 2 1 53 53 H 1.08996 * 108.81595 * 318.47056 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8823 1.0315 0.0000 4 6 2.0149 -0.6800 1.2517 5 6 3.3086 0.0180 1.7186 6 6 4.4780 -0.4177 0.9727 7 6 4.3717 -0.0959 -0.5320 8 1 3.9268 0.8902 -0.6650 9 7 5.7064 -0.1191 -1.1356 10 6 6.4829 0.9818 -1.0964 11 8 6.0767 1.9920 -0.5607 12 6 7.8442 0.9583 -1.7127 13 8 8.2032 -0.0070 -2.3545 14 7 8.6732 2.0093 -1.5555 15 6 10.0280 1.9855 -2.1237 16 6 11.0346 2.2965 -1.0114 17 6 10.6567 3.6201 -0.3424 18 6 11.6642 3.9463 0.7297 19 1 12.4361 3.2337 0.9802 20 6 11.6007 5.1546 1.3908 21 7 12.1838 5.2953 2.5611 22 14 10.6862 6.5918 0.6240 23 1 11.6219 7.3826 -0.2154 24 1 9.5769 6.0792 -0.2197 25 1 10.1332 7.4560 1.6976 26 6 9.2662 3.4977 0.2849 27 6 8.2396 3.2003 -0.8125 28 6 3.5026 -1.1351 -1.1871 29 6 2.0285 -0.6969 -1.2804 30 1 -0.3632 -1.0273 -0.0259 31 1 -0.3633 0.4913 0.9027 32 1 -0.3632 0.5361 -0.8768 33 1 1.2550 -0.6009 2.0292 34 1 2.2170 -1.7305 1.0428 35 1 3.1942 1.0946 1.5923 36 1 3.4647 -0.1983 2.7756 37 1 4.5895 -1.4950 1.0962 38 1 5.3616 0.0754 1.3776 39 1 6.0312 -0.9268 -1.5635 40 1 10.1081 2.7367 -2.9094 41 1 10.2337 0.9981 -2.5369 42 1 12.0345 2.3769 -1.4378 43 1 11.0174 1.4967 -0.2711 44 1 10.6498 4.4149 -1.0882 45 1 12.5951 4.5304 2.9932 46 1 9.2656 2.6866 1.0131 47 1 9.0074 4.4331 0.7812 48 1 8.1737 4.0506 -1.4914 49 1 7.2652 3.0145 -0.3608 50 1 3.8781 -1.3262 -2.1923 51 1 3.5603 -2.0579 -0.6097 52 1 1.9184 -0.0104 -2.1199 53 1 1.4114 -1.5762 -1.4650 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326789747.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:41 Heat of formation + Delta-G solvation = -99.806187 kcal Electronic energy + Delta-G solvation = -30544.944923 eV Core-core repulsion = 26608.110795 eV Total energy + Delta-G solvation = -3936.834128 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.17195 -40.63299 -39.37231 -38.72003 -36.32451 -35.33255 -33.94510 -33.36827 -32.39454 -32.04111 -28.61767 -28.01055 -26.51809 -25.25237 -24.12599 -23.90964 -23.28629 -21.70946 -21.64565 -20.66620 -19.98539 -19.68322 -18.54741 -18.18634 -17.18249 -17.08655 -16.44453 -15.99355 -15.86752 -15.85546 -15.59986 -15.56096 -15.12836 -14.97327 -14.69674 -14.53956 -14.39517 -14.24029 -13.90960 -13.82562 -13.67638 -13.47132 -13.25017 -12.84022 -12.66723 -12.54297 -12.37728 -12.19031 -12.16590 -12.07732 -11.98761 -11.72475 -11.55792 -11.46878 -11.30226 -11.25499 -11.16971 -11.09922 -11.02989 -10.42137 -10.29340 -10.04013 -9.78484 -8.71255 -6.33647 0.27405 1.24228 1.49875 1.54372 1.73457 2.06562 2.42094 2.52516 3.05565 3.20777 3.58003 3.67006 3.96102 3.99483 4.08065 4.11421 4.14672 4.18480 4.23629 4.29649 4.40326 4.42332 4.43666 4.44734 4.57291 4.68079 4.76270 4.78454 4.84083 4.89164 4.92435 4.99644 5.03674 5.07395 5.09513 5.12542 5.14686 5.21683 5.23948 5.27109 5.29540 5.38645 5.44417 5.47421 5.52560 5.54977 5.63852 5.70952 5.99198 6.02865 6.13727 6.22248 6.59217 6.66387 6.89645 7.42091 8.63134 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016207 B = 0.002734 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.203481 B =10240.564046 C =11156.228206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 H 0.056 0.944 4 C -0.108 4.108 5 C -0.116 4.116 6 C -0.123 4.123 7 C 0.145 3.855 8 H 0.083 0.917 9 N -0.680 5.680 10 C 0.513 3.487 11 O -0.522 6.522 12 C 0.500 3.500 13 O -0.550 6.550 14 N -0.570 5.570 15 C 0.111 3.889 16 C -0.107 4.107 17 C 0.015 3.985 18 C -0.605 4.605 19 H 0.013 0.987 20 C -0.019 4.019 21 N -0.939 5.939 22 Si 1.081 2.919 23 H -0.273 1.273 24 H -0.236 1.236 25 H -0.290 1.290 26 C -0.118 4.118 27 C 0.053 3.947 28 C -0.124 4.124 29 C -0.103 4.103 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.051 0.949 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.039 0.961 39 H 0.419 0.581 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.070 0.930 43 H 0.035 0.965 44 H 0.035 0.965 45 H 0.251 0.749 46 H 0.032 0.968 47 H 0.057 0.943 48 H 0.075 0.925 49 H 0.154 0.846 50 H 0.078 0.922 51 H 0.084 0.916 52 H 0.059 0.941 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.544 -14.237 -9.447 30.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 H 0.074 0.926 4 C -0.145 4.145 5 C -0.154 4.154 6 C -0.161 4.161 7 C 0.042 3.958 8 H 0.101 0.899 9 N -0.332 5.332 10 C 0.294 3.706 11 O -0.400 6.400 12 C 0.283 3.717 13 O -0.429 6.429 14 N -0.302 5.302 15 C -0.011 4.011 16 C -0.146 4.146 17 C -0.004 4.004 18 C -0.642 4.642 19 H 0.031 0.969 20 C -0.217 4.217 21 N -0.575 5.575 22 Si 0.902 3.098 23 H -0.199 1.199 24 H -0.159 1.159 25 H -0.216 1.216 26 C -0.157 4.157 27 C -0.068 4.068 28 C -0.162 4.162 29 C -0.141 4.141 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.058 0.942 39 H 0.257 0.743 40 H 0.108 0.892 41 H 0.111 0.889 42 H 0.089 0.911 43 H 0.054 0.946 44 H 0.053 0.947 45 H 0.060 0.940 46 H 0.051 0.949 47 H 0.075 0.925 48 H 0.094 0.906 49 H 0.170 0.830 50 H 0.096 0.904 51 H 0.103 0.897 52 H 0.078 0.922 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -26.002 -12.466 -9.206 30.270 hybrid contribution 1.748 -1.772 0.424 2.524 sum -24.255 -14.238 -8.782 29.464 Atomic orbital electron populations 1.21928 0.94554 1.02188 1.01701 1.21010 0.96227 0.99545 0.94809 0.92576 1.21424 0.96067 1.00098 0.96943 1.20371 0.94872 1.00384 0.99787 1.20804 0.98721 1.02332 0.94289 1.20980 0.80437 1.01695 0.92695 0.89931 1.45986 1.16701 1.14002 1.56537 1.20062 0.86001 0.84445 0.80046 1.90317 1.72695 1.31776 1.45241 1.20226 0.86631 0.82987 0.81823 1.90696 1.76742 1.33528 1.41978 1.48169 1.14144 1.16517 1.51327 1.21883 0.79705 1.03627 0.95848 1.21733 0.98333 0.97775 0.96733 1.19056 0.92456 0.94274 0.94580 1.22197 1.15361 1.04014 1.22629 0.96854 1.27239 0.97084 1.03482 0.93882 1.70942 1.37503 1.34258 1.14758 0.83617 0.77190 0.72932 0.76078 1.19888 1.15905 1.21604 1.22119 0.96257 1.00097 0.97226 1.23381 1.02688 0.86337 0.94363 1.21634 0.94866 0.98035 1.01650 1.21884 0.94031 1.01074 0.97151 0.91904 0.92706 0.92853 0.91093 0.90608 0.93015 0.91696 0.90431 0.94214 0.74333 0.89214 0.88865 0.91109 0.94638 0.94734 0.93998 0.94863 0.92452 0.90639 0.82967 0.90388 0.89725 0.92244 0.90154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.83 71.98 0.64 -0.73 16 2 C -0.10 -1.08 2.21 -11.25 -0.02 -1.10 16 3 H 0.06 0.81 6.64 -2.39 -0.02 0.79 16 4 C -0.11 -1.18 5.12 30.20 0.15 -1.02 16 5 C -0.12 -1.76 5.25 28.69 0.15 -1.61 16 6 C -0.12 -2.10 4.89 28.69 0.14 -1.96 16 7 C 0.15 2.43 2.11 44.60 0.09 2.52 16 8 H 0.08 1.66 6.44 -2.39 -0.02 1.65 16 9 N -0.68 -13.86 4.98 -445.76 -2.22 -16.08 16 10 C 0.51 14.26 7.69 87.27 0.67 14.93 16 11 O -0.52 -16.34 12.69 -3.25 -0.04 -16.38 16 12 C 0.50 15.85 7.76 87.27 0.68 16.52 16 13 O -0.55 -18.27 15.91 -3.25 -0.05 -18.32 16 14 N -0.57 -19.23 2.97 -820.48 -2.44 -21.67 16 15 C 0.11 3.64 6.43 86.36 0.56 4.19 16 16 C -0.11 -4.29 5.30 30.67 0.16 -4.13 16 17 C 0.02 0.71 1.61 -11.51 -0.02 0.69 16 18 C -0.60 -34.53 8.79 25.60 0.23 -34.30 16 19 H 0.01 0.84 7.99 -2.91 -0.02 0.81 16 20 C -0.02 -1.11 5.29 84.66 0.45 -0.66 16 21 N -0.94 -59.68 13.69 21.45 0.29 -59.38 16 22 Si 1.08 49.67 26.35 68.60 1.81 51.48 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 24 H -0.24 -9.37 5.80 99.48 0.58 -8.80 16 25 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 26 C -0.12 -5.07 4.82 30.67 0.15 -4.93 16 27 C 0.05 1.85 6.23 86.36 0.54 2.39 16 28 C -0.12 -1.33 4.93 30.14 0.15 -1.18 16 29 C -0.10 -1.00 5.23 31.32 0.16 -0.84 16 30 H 0.06 0.48 8.11 -2.39 -0.02 0.46 16 31 H 0.05 0.52 8.01 -2.39 -0.02 0.50 16 32 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.07 0.71 7.62 -2.39 -0.02 0.69 16 34 H 0.08 0.70 7.00 -2.39 -0.02 0.68 16 35 H 0.05 0.92 7.47 -2.38 -0.02 0.91 16 36 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.08 1.09 7.49 -2.38 -0.02 1.07 16 38 H 0.04 0.91 8.03 -2.39 -0.02 0.89 16 39 H 0.42 7.29 8.00 -92.70 -0.74 6.55 16 40 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 41 H 0.09 2.91 7.01 -2.39 -0.02 2.90 16 42 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 43 H 0.03 1.52 8.14 -2.38 -0.02 1.50 16 44 H 0.03 1.53 6.56 -2.39 -0.02 1.51 16 45 H 0.25 16.26 8.73 -92.71 -0.81 15.45 16 46 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.06 2.52 5.55 -2.38 -0.01 2.51 16 48 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 49 H 0.15 5.31 3.78 -82.47 -0.31 5.00 16 50 H 0.08 0.77 7.85 -2.39 -0.02 0.76 16 51 H 0.08 0.72 6.66 -2.38 -0.02 0.70 16 52 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 53 H 0.08 0.58 7.95 -2.39 -0.02 0.56 16 Total: -1.00 -69.04 391.12 1.91 -67.13 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: -0.31 Total: 24.43 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: 4.87 Total: -11.21 kcal Atomic # 7 Polarization: -92.76 SS G_CDS: -4.36 Total: -97.13 kcal Atomic # 8 Polarization: -34.61 SS G_CDS: -0.09 Total: -34.70 kcal Atomic # 14 Polarization: 49.67 SS G_CDS: 1.81 Total: 51.48 kcal Total: -69.04 1.91 -67.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326789747.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.676 kcal (2) G-P(sol) polarization free energy of solvation -69.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds