Wall clock time and date at job start Tue Mar 31 2020 20:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 108.79168 * 2 1 4 4 C 1.54245 * 108.89399 * 241.44694 * 2 1 3 5 5 C 1.50469 * 108.68170 * 159.16124 * 4 2 1 6 6 C 1.54256 * 112.39321 * 93.93128 * 5 4 2 7 7 C 1.54066 * 112.95084 * 318.57936 * 6 5 4 8 8 H 1.09001 * 108.79545 * 78.89145 * 7 6 5 9 9 N 1.46498 * 108.87655 * 197.39084 * 7 6 5 10 10 C 1.34770 * 120.00219 * 277.97200 * 9 7 6 11 11 O 1.21351 * 119.99750 * 0.02562 * 10 9 7 12 12 C 1.49447 * 120.00221 * 180.02562 * 10 9 7 13 13 O 1.21352 * 120.00203 * 6.39604 * 12 10 9 14 14 N 1.34777 * 120.00112 * 186.40242 * 12 10 9 15 15 C 1.46929 * 120.63107 * 186.80321 * 14 12 10 16 16 C 1.53625 * 108.54496 * 126.36709 * 15 14 12 17 17 C 1.53045 * 109.24219 * 54.85212 * 16 15 14 18 18 C 1.50691 * 109.46102 * 178.49074 * 17 16 15 19 19 H 1.08000 * 120.00275 * 120.07279 * 18 17 16 20 20 C 1.37885 * 120.00200 * 300.07317 * 18 17 16 21 21 N 1.31512 * 119.99865 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99918 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47283 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47093 * 120.00173 * 22 20 18 25 25 H 1.48503 * 109.46955 * 240.00084 * 22 20 18 26 26 C 1.53035 * 109.53796 * 298.51579 * 17 16 15 27 27 C 1.46926 * 120.63053 * 7.08202 * 14 12 10 28 28 C 1.50476 * 112.49276 * 318.16981 * 7 6 5 29 29 C 1.45540 * 108.89986 * 118.55872 * 2 1 3 30 30 H 1.09008 * 109.46759 * 178.55953 * 1 2 3 31 31 H 1.09005 * 109.46945 * 298.55101 * 1 2 3 32 32 H 1.08994 * 109.47542 * 58.55840 * 1 2 3 33 33 H 1.09002 * 109.62720 * 278.96181 * 4 2 1 34 34 H 1.08995 * 109.62847 * 39.34800 * 4 2 1 35 35 H 1.09011 * 108.87467 * 215.02771 * 5 4 2 36 36 H 1.09005 * 108.87348 * 333.46134 * 5 4 2 37 37 H 1.09002 * 108.83562 * 197.61027 * 6 5 4 38 38 H 1.09004 * 108.56742 * 79.35587 * 6 5 4 39 39 H 0.97005 * 120.00053 * 97.97496 * 9 7 6 40 40 H 1.09002 * 109.58813 * 246.20033 * 15 14 12 41 41 H 1.09002 * 109.58303 * 6.62708 * 15 14 12 42 42 H 1.09004 * 109.63397 * 294.86985 * 16 15 14 43 43 H 1.08993 * 109.43269 * 174.72930 * 16 15 14 44 44 H 1.09000 * 109.44216 * 58.52901 * 17 16 15 45 45 H 0.96997 * 120.00297 * 179.97438 * 21 20 18 46 46 H 1.08992 * 109.49979 * 301.40788 * 26 17 16 47 47 H 1.09002 * 109.51986 * 181.32808 * 26 17 16 48 48 H 1.08998 * 109.58772 * 353.37538 * 27 14 12 49 49 H 1.09000 * 109.58833 * 113.66031 * 27 14 12 50 50 H 1.09005 * 109.62732 * 334.43478 * 28 7 6 51 51 H 1.09004 * 109.62341 * 213.85805 * 28 7 6 52 52 H 1.09002 * 108.89165 * 303.44736 * 29 2 1 53 53 H 1.08997 * 108.89780 * 61.93369 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8811 1.0318 0.0000 4 6 2.0295 -0.6975 -1.2818 5 6 3.4459 -0.2639 -1.5458 6 6 4.4803 -1.2405 -0.9493 7 6 4.0936 -1.7409 0.4555 8 1 3.3429 -2.5248 0.3548 9 7 5.2818 -2.3036 1.1019 10 6 5.6634 -3.5668 0.8281 11 8 5.0231 -4.2380 0.0457 12 6 6.8752 -4.1410 1.4880 13 8 7.4481 -3.5146 2.3552 14 7 7.3318 -5.3544 1.1198 15 6 8.4283 -5.9970 1.8571 16 6 7.9728 -7.4002 2.2854 17 6 7.5050 -8.1768 1.0524 18 6 7.0917 -9.5670 1.4617 19 1 6.0808 -9.9038 1.2855 20 6 8.0043 -10.4092 2.0610 21 7 9.2354 -9.9993 2.2751 22 14 7.4917 -12.1321 2.5690 23 1 6.0644 -12.3471 2.2201 24 1 8.3307 -13.1286 1.8558 25 1 7.6729 -12.2907 4.0344 26 6 6.3136 -7.4573 0.4160 27 6 6.7466 -6.0572 -0.0301 28 6 3.5394 -0.6448 1.3248 29 6 2.0014 -0.6583 1.2094 30 1 -0.3633 -1.0274 -0.0258 31 1 -0.3633 0.4912 0.9027 32 1 -0.3634 0.5360 -0.8767 33 1 1.9967 -1.7787 -1.1469 34 1 1.3969 -0.4142 -2.1230 35 1 3.5985 -0.1944 -2.6230 36 1 3.6010 0.7211 -1.1054 37 1 5.4456 -0.7377 -0.8901 38 1 4.5719 -2.0985 -1.6153 39 1 5.7938 -1.7670 1.7271 40 1 9.3049 -6.0748 1.2139 41 1 8.6715 -5.4050 2.7395 42 1 7.1508 -7.3173 2.9965 43 1 8.8063 -7.9255 2.7517 44 1 8.3200 -8.2378 0.3312 45 1 9.8773 -10.5916 2.6971 46 1 5.5074 -7.3739 1.1446 47 1 5.9658 -8.0231 -0.4483 48 1 5.8799 -5.5051 -0.3934 49 1 7.4880 -6.1377 -0.8251 50 1 3.9234 0.3185 0.9888 51 1 3.8304 -0.8169 2.3611 52 1 1.5780 -0.1501 2.0758 53 1 1.6567 -1.6923 1.2058 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326789749.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:49 Heat of formation + Delta-G solvation = -97.398955 kcal Electronic energy + Delta-G solvation = -30309.392492 eV Core-core repulsion = 26372.662749 eV Total energy + Delta-G solvation = -3936.729743 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.11920 -40.58147 -39.38182 -38.60473 -36.41392 -35.29096 -33.66792 -32.95202 -32.28221 -31.84565 -28.59271 -28.08893 -26.51479 -25.29811 -24.36320 -23.99607 -23.33959 -21.78178 -21.18734 -20.58087 -20.21888 -18.68782 -18.51930 -18.05170 -17.18053 -16.93181 -16.51364 -16.45639 -15.99874 -15.69988 -15.51834 -15.19283 -15.00257 -14.90898 -14.58100 -14.51622 -14.39752 -13.92374 -13.86522 -13.65666 -13.48555 -13.24900 -13.08833 -13.00449 -12.85430 -12.55107 -12.51924 -12.36934 -12.13841 -12.05490 -11.95622 -11.90058 -11.47407 -11.37018 -11.35864 -11.26752 -11.19488 -11.06498 -10.87490 -10.46277 -10.25873 -10.00403 -9.69819 -8.09230 -6.23081 0.29489 1.29793 1.39222 1.41735 1.52579 2.08923 2.42692 2.47625 3.16820 3.24477 3.58882 3.75128 3.98882 4.06322 4.09964 4.13593 4.28524 4.30639 4.34332 4.35633 4.42612 4.42920 4.48852 4.58394 4.67797 4.75196 4.80818 4.86632 4.91125 4.94635 4.99975 5.03224 5.07359 5.11353 5.16366 5.18600 5.24334 5.31608 5.33784 5.36263 5.42256 5.43248 5.47676 5.50645 5.54762 5.62514 5.64703 5.95122 6.01744 6.08462 6.30721 6.37049 6.69720 6.87105 6.92214 7.44768 8.94530 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.020970 B = 0.002318 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.908959 B =12076.544406 C =12599.294570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.089 4.089 3 H 0.079 0.921 4 C -0.117 4.117 5 C -0.108 4.108 6 C -0.126 4.126 7 C 0.146 3.854 8 H 0.074 0.926 9 N -0.683 5.683 10 C 0.516 3.484 11 O -0.521 6.521 12 C 0.496 3.504 13 O -0.554 6.554 14 N -0.569 5.569 15 C 0.115 3.885 16 C -0.111 4.111 17 C 0.042 3.958 18 C -0.532 4.532 19 H 0.050 0.950 20 C 0.013 3.987 21 N -0.915 5.915 22 Si 0.952 3.048 23 H -0.270 1.270 24 H -0.280 1.280 25 H -0.281 1.281 26 C -0.109 4.109 27 C 0.057 3.943 28 C -0.122 4.122 29 C -0.109 4.109 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.048 0.952 39 H 0.419 0.581 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.025 0.975 43 H 0.079 0.921 44 H 0.003 0.997 45 H 0.261 0.739 46 H 0.041 0.959 47 H 0.066 0.934 48 H 0.156 0.844 49 H 0.065 0.935 50 H 0.091 0.909 51 H 0.078 0.922 52 H 0.075 0.925 53 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.688 24.604 -5.562 28.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.107 4.107 3 H 0.097 0.903 4 C -0.155 4.155 5 C -0.146 4.146 6 C -0.165 4.165 7 C 0.043 3.957 8 H 0.092 0.908 9 N -0.335 5.335 10 C 0.297 3.703 11 O -0.400 6.400 12 C 0.279 3.721 13 O -0.434 6.434 14 N -0.301 5.301 15 C -0.007 4.007 16 C -0.149 4.149 17 C 0.024 3.976 18 C -0.570 4.570 19 H 0.068 0.932 20 C -0.185 4.185 21 N -0.554 5.554 22 Si 0.778 3.222 23 H -0.194 1.194 24 H -0.205 1.205 25 H -0.207 1.207 26 C -0.147 4.147 27 C -0.063 4.063 28 C -0.160 4.160 29 C -0.147 4.147 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.257 0.743 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.044 0.956 43 H 0.097 0.903 44 H 0.021 0.979 45 H 0.071 0.929 46 H 0.060 0.940 47 H 0.084 0.916 48 H 0.172 0.828 49 H 0.083 0.917 50 H 0.110 0.890 51 H 0.096 0.904 52 H 0.094 0.906 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.686 24.393 -5.594 28.524 hybrid contribution 0.545 -1.462 0.707 1.713 sum -13.141 22.931 -4.887 26.877 Atomic orbital electron populations 1.21938 0.95103 1.01617 1.02095 1.20094 0.95955 1.00317 0.94369 0.90280 1.21456 0.96091 1.00150 0.97790 1.21277 0.93688 0.98812 1.00779 1.22317 0.99927 0.99521 0.94737 1.21168 0.85322 0.96520 0.92705 0.90764 1.46143 1.29809 1.12087 1.45454 1.20001 0.85033 0.83392 0.81870 1.90319 1.55135 1.58556 1.35950 1.20352 0.85534 0.82342 0.83838 1.90688 1.59253 1.60020 1.33430 1.48214 1.34576 1.16558 1.30731 1.21897 0.88333 0.94096 0.96352 1.21857 1.00852 0.92749 0.99477 1.18664 0.93088 0.93000 0.92891 1.21577 0.96971 0.99169 1.39273 0.93198 1.25715 0.95020 1.01953 0.95856 1.69967 1.04269 1.37149 1.44051 0.85592 0.78433 0.80340 0.77802 1.19419 1.20530 1.20723 1.21773 0.98376 0.94630 0.99892 1.23283 1.02041 0.94710 0.86283 1.21665 0.96355 0.98482 0.99507 1.20470 0.94022 1.01285 0.98874 0.93391 0.92320 0.92207 0.92916 0.91059 0.91538 0.90543 0.91399 0.93332 0.74346 0.91202 0.90061 0.95643 0.90257 0.97859 0.92940 0.94048 0.91558 0.82769 0.91673 0.88998 0.90353 0.90629 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.97 71.98 0.65 -0.78 16 2 C -0.09 -0.87 2.22 -12.65 -0.03 -0.90 16 3 H 0.08 0.63 7.48 -2.39 -0.02 0.62 16 4 C -0.12 -1.36 4.97 30.20 0.15 -1.21 16 5 C -0.11 -1.22 5.34 30.20 0.16 -1.06 16 6 C -0.13 -2.00 5.37 31.38 0.17 -1.83 16 7 C 0.15 2.48 1.94 44.54 0.09 2.57 16 8 H 0.07 1.56 6.07 -2.39 -0.01 1.55 16 9 N -0.68 -14.49 4.94 -446.06 -2.20 -16.70 16 10 C 0.52 15.01 7.69 87.27 0.67 15.68 16 11 O -0.52 -16.73 12.77 -3.25 -0.04 -16.78 16 12 C 0.50 17.22 7.74 87.27 0.68 17.89 16 13 O -0.55 -20.45 15.94 -3.25 -0.05 -20.50 16 14 N -0.57 -21.47 2.97 -819.62 -2.43 -23.90 16 15 C 0.12 4.69 6.44 86.51 0.56 5.25 16 16 C -0.11 -5.35 5.17 30.82 0.16 -5.19 16 17 C 0.04 2.12 2.06 -11.52 -0.02 2.10 16 18 C -0.53 -29.58 8.56 25.60 0.22 -29.36 16 19 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 20 C 0.01 0.73 5.30 84.66 0.45 1.18 16 21 N -0.91 -52.40 11.31 21.45 0.24 -52.16 16 22 Si 0.95 43.96 29.54 68.60 2.03 45.99 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 25 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 26 C -0.11 -4.62 5.30 30.67 0.16 -4.46 16 27 C 0.06 2.09 6.27 86.36 0.54 2.63 16 28 C -0.12 -1.42 5.17 30.20 0.16 -1.26 16 29 C -0.11 -1.20 4.44 28.73 0.13 -1.07 16 30 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.06 0.50 8.11 -2.38 -0.02 0.48 16 32 H 0.06 0.51 8.12 -2.39 -0.02 0.49 16 33 H 0.05 0.80 6.97 -2.39 -0.02 0.78 16 34 H 0.07 0.74 7.96 -2.39 -0.02 0.72 16 35 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.08 0.67 6.65 -2.38 -0.02 0.65 16 37 H 0.07 1.03 8.12 -2.39 -0.02 1.01 16 38 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.42 7.76 7.97 -92.70 -0.74 7.02 16 40 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 41 H 0.08 3.23 7.05 -2.39 -0.02 3.22 16 42 H 0.02 1.25 8.14 -2.38 -0.02 1.23 16 43 H 0.08 4.26 6.03 -2.39 -0.01 4.24 16 44 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 45 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 46 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 47 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 48 H 0.16 5.38 3.78 -78.81 -0.30 5.08 16 49 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 50 H 0.09 0.80 6.99 -2.38 -0.02 0.78 16 51 H 0.08 0.90 7.85 -2.39 -0.02 0.88 16 52 H 0.08 0.70 8.08 -2.39 -0.02 0.68 16 53 H 0.05 0.73 7.47 -2.39 -0.02 0.71 16 Total: -1.00 -63.42 395.79 2.29 -61.13 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: -0.13 Total: 22.74 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: 4.88 Total: 0.18 kcal Atomic # 7 Polarization: -88.37 SS G_CDS: -4.39 Total: -92.76 kcal Atomic # 8 Polarization: -37.18 SS G_CDS: -0.09 Total: -37.28 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -63.42 2.29 -61.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326789749.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.273 kcal (2) G-P(sol) polarization free energy of solvation -63.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds