Wall clock time and date at job start Tue Mar 31 2020 21:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.45954 * 2 1 4 4 C 1.53040 * 109.45747 * 240.02637 * 2 1 3 5 5 C 1.53192 * 109.31200 * 178.61617 * 4 2 1 6 6 N 1.46924 * 108.77592 * 54.63596 * 5 4 2 7 7 C 1.34770 * 120.63139 * 126.41601 * 6 5 4 8 8 O 1.21353 * 120.00098 * 178.29140 * 7 6 5 9 9 C 1.49448 * 120.00343 * 358.28820 * 7 6 5 10 10 O 1.21352 * 119.99642 * 7.65645 * 9 7 6 11 11 N 1.34777 * 120.00231 * 187.65704 * 9 7 6 12 12 C 1.46922 * 120.63329 * 7.34970 * 11 9 7 13 13 C 1.53184 * 108.77805 * 233.58583 * 12 11 9 14 14 C 1.53036 * 109.31506 * 305.36515 * 13 12 11 15 15 C 1.53042 * 109.53699 * 61.36445 * 14 13 12 16 16 H 1.08996 * 109.50011 * 58.58622 * 15 14 13 17 17 C 1.50706 * 109.49809 * 178.68348 * 15 14 13 18 18 H 1.08002 * 119.99463 * 0.02562 * 17 15 14 19 19 C 1.37868 * 119.99961 * 179.97438 * 17 15 14 20 20 N 1.31521 * 120.00200 * 0.02562 * 19 17 15 21 21 Si 1.86804 * 119.99952 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47071 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47330 * 120.00131 * 21 19 17 24 24 H 1.48503 * 109.46988 * 240.00164 * 21 19 17 25 25 C 1.46929 * 120.62762 * 187.07203 * 11 9 7 26 26 C 1.46931 * 118.73904 * 306.38779 * 6 5 4 27 27 C 1.53039 * 109.45867 * 119.95839 * 2 1 3 28 28 C 1.52999 * 109.49852 * 301.33402 * 27 2 1 29 29 C 1.53005 * 109.49725 * 61.43518 * 27 2 1 30 30 H 1.08994 * 109.47009 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46473 * 299.97423 * 1 2 3 32 32 H 1.08998 * 109.46787 * 59.97323 * 1 2 3 33 33 H 1.08998 * 109.49562 * 298.56718 * 4 2 1 34 34 H 1.08999 * 109.49843 * 58.66085 * 4 2 1 35 35 H 1.09000 * 109.58489 * 174.42060 * 5 4 2 36 36 H 1.08999 * 109.58732 * 294.70306 * 5 4 2 37 37 H 1.08997 * 109.58387 * 353.37719 * 12 11 9 38 38 H 1.09003 * 109.58340 * 113.65325 * 12 11 9 39 39 H 1.09003 * 109.49711 * 65.31881 * 13 12 11 40 40 H 1.08998 * 109.49921 * 185.41138 * 13 12 11 41 41 H 1.09004 * 109.46211 * 181.38037 * 14 13 12 42 42 H 1.08991 * 109.46053 * 301.34360 * 14 13 12 43 43 H 0.97003 * 119.99853 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.58622 * 246.19816 * 25 11 9 45 45 H 1.09000 * 109.58944 * 6.62682 * 25 11 9 46 46 H 1.08995 * 109.58549 * 173.39271 * 26 6 5 47 47 H 1.08999 * 109.58822 * 293.82597 * 26 6 5 48 48 H 1.09000 * 109.46844 * 60.00328 * 28 27 2 49 49 H 1.09003 * 109.46860 * 179.97438 * 28 27 2 50 50 H 1.09001 * 109.47292 * 300.00160 * 28 27 2 51 51 H 1.08996 * 109.47548 * 59.99699 * 29 27 2 52 52 H 1.08998 * 109.46729 * 179.97438 * 29 27 2 53 53 H 1.08995 * 109.46931 * 299.99356 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2500 5 6 3.5714 -0.6888 -1.2642 6 7 4.0679 -1.2489 0.0001 7 6 4.9620 -2.2573 0.0002 8 8 5.3879 -2.6905 1.0507 9 6 5.4291 -2.8420 -1.2934 10 8 5.1134 -2.3220 -2.3434 11 7 6.2010 -3.9469 -1.2938 12 6 6.4593 -4.6802 -0.0471 13 6 7.9731 -4.8329 0.1305 14 6 8.5657 -5.4888 -1.1187 15 6 8.3098 -4.5966 -2.3355 16 1 8.7569 -3.6167 -2.1687 17 6 8.9218 -5.2277 -3.5596 18 1 9.4412 -6.1711 -3.4783 19 6 8.8178 -4.6012 -4.7833 20 7 8.1849 -3.4525 -4.8824 21 14 9.5759 -5.3838 -6.3007 22 1 10.2262 -6.6647 -5.9246 23 1 8.5144 -5.6446 -7.3059 24 1 10.5892 -4.4644 -6.8780 25 6 6.7951 -4.4445 -2.5421 26 6 3.5715 -0.6885 1.2643 27 6 2.0399 -0.7206 1.2502 28 6 1.5028 -0.0185 2.4990 29 6 1.5597 -2.1733 1.2338 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5134 0.8902 32 1 -0.3633 0.5143 -0.8897 33 1 1.6978 -1.7558 -1.2381 34 1 1.6572 -0.2210 -2.1398 35 1 3.9416 -1.2849 -2.0983 36 1 3.9143 0.3404 -1.3700 37 1 6.0466 -4.1252 0.7953 38 1 5.9941 -5.6646 -0.0992 39 1 8.4234 -3.8507 0.2742 40 1 8.1761 -5.4574 1.0004 41 1 9.6394 -5.6210 -0.9848 42 1 8.0972 -6.4602 -1.2757 43 1 8.1120 -3.0116 -5.7433 44 1 6.3591 -5.4111 -2.7945 45 1 6.6041 -3.7339 -3.3464 46 1 3.9417 -1.2843 2.0985 47 1 3.9144 0.3410 1.3673 48 1 0.4131 -0.0391 2.4870 49 1 1.8659 -0.5324 3.3891 50 1 1.8466 1.0158 2.5105 51 1 1.9440 -2.6730 0.3446 52 1 1.9235 -2.6861 2.1242 53 1 0.4701 -2.1956 1.2209 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327410339.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:47 Heat of formation + Delta-G solvation = -67.512786 kcal Electronic energy + Delta-G solvation = -31603.167179 eV Core-core repulsion = 27667.733398 eV Total energy + Delta-G solvation = -3935.433781 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.34057 -40.68364 -39.27001 -38.66494 -35.89925 -35.06902 -33.57000 -33.47792 -31.57283 -29.70375 -28.61504 -28.17327 -27.25044 -26.72233 -24.69212 -23.68245 -23.14928 -23.03922 -21.34004 -20.18041 -19.19742 -18.61273 -18.12410 -17.80194 -17.32921 -16.87911 -16.51326 -16.25620 -15.93635 -15.61496 -15.47928 -15.20427 -14.98153 -14.89567 -14.50019 -14.47591 -14.43251 -14.10898 -13.81649 -13.58120 -13.47821 -13.13365 -12.92624 -12.90244 -12.81516 -12.66569 -12.63410 -12.35497 -12.30935 -12.14686 -12.10207 -12.00663 -11.78024 -11.71375 -11.44085 -11.21631 -11.09150 -11.02258 -10.69622 -10.55734 -9.85921 -9.70144 -9.53614 -8.12571 -6.28595 0.32483 1.30538 1.41425 1.42731 1.54355 2.10838 2.39371 2.45560 3.10457 3.17618 3.64451 3.74725 3.78820 4.02231 4.12329 4.17068 4.22039 4.31887 4.39040 4.42369 4.52248 4.57589 4.60978 4.69540 4.72074 4.75938 4.79612 4.83998 4.87433 4.90971 4.95693 5.00348 5.04671 5.09052 5.09980 5.14026 5.19107 5.20530 5.24938 5.26642 5.30715 5.33007 5.42802 5.55143 5.55735 5.59445 5.66758 5.83415 5.92260 6.02495 6.27874 6.40247 6.73220 6.82681 6.99085 7.41141 8.91825 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019325 B = 0.003105 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.530038 B = 9016.301435 C =10052.148713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 H 0.078 0.922 4 C -0.123 4.123 5 C 0.043 3.957 6 N -0.565 5.565 7 C 0.514 3.486 8 O -0.527 6.527 9 C 0.488 3.512 10 O -0.539 6.539 11 N -0.571 5.571 12 C 0.050 3.950 13 C -0.119 4.119 14 C -0.107 4.107 15 C 0.040 3.960 16 H -0.011 1.011 17 C -0.535 4.535 18 H 0.062 0.938 19 C 0.012 3.988 20 N -0.914 5.914 21 Si 0.959 3.041 22 H -0.263 1.263 23 H -0.281 1.281 24 H -0.282 1.282 25 C 0.123 3.877 26 C 0.110 3.890 27 C -0.068 4.068 28 C -0.136 4.136 29 C -0.140 4.140 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.134 0.866 36 H 0.073 0.927 37 H 0.152 0.848 38 H 0.071 0.929 39 H 0.045 0.955 40 H 0.097 0.903 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.262 0.738 44 H 0.045 0.955 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.074 0.926 49 H 0.058 0.942 50 H 0.065 0.935 51 H 0.035 0.965 52 H 0.051 0.949 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.254 6.648 14.608 22.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.098 4.098 3 H 0.096 0.904 4 C -0.161 4.161 5 C -0.078 4.078 6 N -0.295 5.295 7 C 0.297 3.703 8 O -0.407 6.407 9 C 0.272 3.728 10 O -0.420 6.420 11 N -0.302 5.302 12 C -0.070 4.070 13 C -0.157 4.157 14 C -0.145 4.145 15 C 0.021 3.979 16 H 0.007 0.993 17 C -0.573 4.573 18 H 0.080 0.920 19 C -0.187 4.187 20 N -0.552 5.552 21 Si 0.784 3.216 22 H -0.187 1.187 23 H -0.206 1.206 24 H -0.208 1.208 25 C 0.001 3.999 26 C -0.011 4.011 27 C -0.069 4.069 28 C -0.193 4.193 29 C -0.197 4.197 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.104 0.896 35 H 0.150 0.850 36 H 0.092 0.908 37 H 0.169 0.831 38 H 0.089 0.911 39 H 0.064 0.936 40 H 0.116 0.884 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.104 0.896 46 H 0.106 0.894 47 H 0.102 0.898 48 H 0.093 0.907 49 H 0.077 0.923 50 H 0.084 0.916 51 H 0.054 0.946 52 H 0.070 0.930 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.240 6.812 14.490 22.805 hybrid contribution 0.805 -0.296 -1.408 1.648 sum -15.435 6.516 13.082 21.257 Atomic orbital electron populations 1.21900 0.93722 1.02095 1.02511 1.21168 0.96814 0.99055 0.92794 0.90378 1.21981 0.93422 1.01344 0.99372 1.23284 0.95935 1.01239 0.87350 1.48045 1.39494 1.32210 1.09780 1.19942 0.80493 0.81211 0.88612 1.90267 1.57060 1.60094 1.33285 1.20488 0.80564 0.82002 0.89788 1.90305 1.56290 1.60841 1.34550 1.48495 1.45367 1.24680 1.11640 1.23268 0.97721 0.98139 0.87876 1.21805 0.94697 1.00678 0.98537 1.21567 0.99920 0.98606 0.94387 1.18979 0.90881 0.94272 0.93804 0.99295 1.21499 1.35326 1.07199 0.93265 0.91996 1.25864 0.95507 0.95208 1.02165 1.70055 1.42744 1.16925 1.25496 0.85488 0.78139 0.78722 0.79204 1.18726 1.20637 1.20840 1.22054 0.94972 0.98140 0.84728 1.22087 0.94605 0.99427 0.84953 1.20886 0.92649 0.96356 0.96969 1.21833 1.01967 1.00336 0.95207 1.21905 1.01766 0.95174 1.00863 0.92712 0.91030 0.92356 0.92335 0.89634 0.84995 0.90846 0.83145 0.91096 0.93645 0.88422 0.92799 0.92386 0.92930 0.93704 0.89556 0.89437 0.89776 0.90682 0.92251 0.91582 0.94637 0.93005 0.90864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.49 71.98 0.61 -1.15 16 2 C -0.08 -1.23 2.00 -10.76 -0.02 -1.25 16 3 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 4 C -0.12 -2.52 5.02 30.67 0.15 -2.36 16 5 C 0.04 1.14 6.22 86.36 0.54 1.68 16 6 N -0.56 -15.72 2.41 -820.48 -1.98 -17.69 16 7 C 0.51 17.76 7.64 87.27 0.67 18.42 16 8 O -0.53 -18.33 12.55 -3.26 -0.04 -18.37 16 9 C 0.49 20.36 7.66 87.27 0.67 21.02 16 10 O -0.54 -24.78 12.48 -3.25 -0.04 -24.82 16 11 N -0.57 -24.46 2.97 -819.65 -2.43 -26.89 16 12 C 0.05 1.77 6.26 86.36 0.54 2.31 16 13 C -0.12 -4.15 6.08 30.67 0.19 -3.96 16 14 C -0.11 -4.40 5.10 30.62 0.16 -4.24 16 15 C 0.04 2.04 2.26 -11.31 -0.03 2.02 16 16 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 17 C -0.53 -29.46 8.56 25.60 0.22 -29.24 16 18 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 19 C 0.01 0.68 5.30 84.65 0.45 1.13 16 20 N -0.91 -54.20 11.41 21.45 0.24 -53.96 16 21 Si 0.96 43.86 29.54 68.60 2.03 45.89 16 22 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 24 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 25 C 0.12 6.15 5.41 86.51 0.47 6.62 16 26 C 0.11 2.32 5.11 86.36 0.44 2.76 16 27 C -0.07 -1.09 0.55 -52.10 -0.03 -1.12 16 28 C -0.14 -1.54 8.10 71.98 0.58 -0.95 16 29 C -0.14 -2.55 7.67 71.98 0.55 -2.00 16 30 H 0.05 0.71 6.47 -2.39 -0.02 0.69 16 31 H 0.07 0.68 6.40 -2.39 -0.02 0.67 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 1.33 6.34 -2.39 -0.02 1.31 16 34 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.13 4.59 3.80 -81.33 -0.31 4.28 16 36 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.15 5.16 3.82 -76.08 -0.29 4.87 16 38 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 41 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 44 H 0.04 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.09 5.01 5.20 -2.39 -0.01 5.00 16 46 H 0.09 1.99 7.01 -2.39 -0.02 1.97 16 47 H 0.08 1.54 8.14 -2.39 -0.02 1.53 16 48 H 0.07 0.70 6.40 -2.39 -0.02 0.68 16 49 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 50 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 51 H 0.03 0.81 5.97 -2.39 -0.01 0.80 16 52 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 53 H 0.07 1.10 6.47 -2.39 -0.02 1.08 16 Total: -1.00 -65.12 386.14 4.26 -60.86 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: 0.32 Total: 25.31 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 6.16 Total: 9.67 kcal Atomic # 7 Polarization: -94.38 SS G_CDS: -4.16 Total: -98.54 kcal Atomic # 8 Polarization: -43.11 SS G_CDS: -0.08 Total: -43.19 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -65.12 4.26 -60.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327410339.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.652 kcal (2) G-P(sol) polarization free energy of solvation -65.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds