Wall clock time and date at job start Tue Mar 31 2020 20:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46925 * 2 1 4 4 C 1.53001 * 109.46897 * 239.99697 * 2 1 3 5 5 C 1.52996 * 109.47299 * 300.00225 * 4 2 1 6 6 C 1.53002 * 109.46917 * 300.00018 * 5 4 2 7 7 C 1.53007 * 109.47291 * 60.00380 * 6 5 4 8 8 H 1.08997 * 109.46926 * 59.99654 * 7 6 5 9 9 C 1.52995 * 109.47122 * 179.97438 * 7 6 5 10 10 N 1.46496 * 109.47231 * 294.99876 * 9 7 6 11 11 C 1.34782 * 120.00237 * 180.02562 * 10 9 7 12 12 O 1.21348 * 119.99473 * 359.97438 * 11 10 9 13 13 C 1.49443 * 120.00220 * 179.97438 * 11 10 9 14 14 O 1.21354 * 120.00001 * 4.97843 * 13 11 10 15 15 N 1.34771 * 120.00295 * 184.98596 * 13 11 10 16 16 C 1.46507 * 120.00428 * 184.83624 * 15 13 11 17 17 C 1.52998 * 109.46970 * 175.54976 * 16 15 13 18 18 C 1.50704 * 115.55181 * 279.27403 * 17 16 15 19 19 H 1.07993 * 120.00092 * 93.09529 * 18 17 16 20 20 C 1.37881 * 119.99713 * 273.09957 * 18 17 16 21 21 N 1.31510 * 120.00380 * 8.23706 * 20 18 17 22 22 Si 1.86803 * 119.99605 * 188.23981 * 20 18 17 23 23 H 1.48497 * 109.47323 * 59.99633 * 22 20 18 24 24 H 1.48503 * 109.46748 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47009 * 299.99767 * 22 20 18 26 26 C 1.53003 * 117.49872 * 133.57116 * 17 16 15 27 27 C 1.52999 * 117.49996 * 64.94650 * 17 16 15 28 28 C 1.53001 * 109.46799 * 119.99628 * 2 1 3 29 29 H 1.08997 * 109.47687 * 300.00389 * 28 2 1 30 30 C 1.53000 * 109.47077 * 179.97438 * 28 2 1 31 31 H 1.08998 * 109.47219 * 300.00300 * 1 2 3 32 32 H 1.09000 * 109.47116 * 60.00209 * 1 2 3 33 33 H 1.09000 * 109.47411 * 180.02562 * 1 2 3 34 34 H 1.08993 * 109.46923 * 60.00393 * 4 2 1 35 35 H 1.08997 * 109.46597 * 180.02562 * 4 2 1 36 36 H 1.08993 * 109.47228 * 59.99910 * 5 4 2 37 37 H 1.08998 * 109.47136 * 180.02562 * 5 4 2 38 38 H 1.08996 * 109.47809 * 299.99970 * 6 5 4 39 39 H 1.09000 * 109.46969 * 179.97438 * 6 5 4 40 40 H 1.09004 * 109.46923 * 174.99566 * 9 7 6 41 41 H 1.09005 * 109.47050 * 54.99766 * 9 7 6 42 42 H 0.97000 * 120.00248 * 359.97438 * 10 9 7 43 43 H 0.97001 * 119.99658 * 5.11000 * 15 13 11 44 44 H 1.08997 * 109.47173 * 295.55077 * 16 15 13 45 45 H 1.09006 * 109.46712 * 55.55160 * 16 15 13 46 46 H 0.96998 * 120.00203 * 185.01079 * 21 20 18 47 47 H 1.09006 * 117.49383 * 359.97438 * 26 17 16 48 48 H 1.08996 * 117.50450 * 145.01540 * 26 17 16 49 49 H 1.08995 * 117.50059 * 214.97502 * 27 17 16 50 50 H 1.08996 * 117.49749 * 0.02562 * 27 17 16 51 51 H 1.09005 * 109.46924 * 300.00418 * 30 28 2 52 52 H 1.09000 * 109.47059 * 60.00207 * 30 28 2 53 53 H 1.09000 * 109.47395 * 180.02562 * 30 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5299 -2.1638 -1.2492 6 6 2.0399 -2.8850 0.0001 7 6 1.5299 -2.1637 1.2494 8 1 0.4399 -2.1637 1.2493 9 6 2.0394 -2.8853 2.4986 10 7 1.4548 -4.2272 2.5600 11 6 1.7624 -5.0502 3.5821 12 8 2.5240 -4.6797 4.4511 13 6 1.1656 -6.4188 3.6450 14 8 0.4763 -6.8228 2.7315 15 7 1.3926 -7.2044 4.7163 16 6 0.8970 -8.5830 4.7321 17 6 1.3811 -9.2844 6.0027 18 6 2.7950 -9.8040 5.9599 19 1 3.6066 -9.1917 6.3240 20 6 3.0525 -11.0612 5.4556 21 7 2.0946 -11.7418 4.8651 22 14 4.7621 -11.7978 5.6114 23 1 5.1258 -11.9056 7.0471 24 1 4.7774 -13.1481 4.9935 25 1 5.7423 -10.9250 4.9167 26 6 0.3544 -10.0937 6.7977 27 6 0.8625 -8.7571 7.3421 28 6 2.0399 -0.7212 1.2493 29 1 1.6766 -0.2074 2.1393 30 6 3.5699 -0.7218 1.2491 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.6767 -0.2075 -2.1391 35 1 3.1299 -0.7217 -1.2489 36 1 0.4400 -2.1638 -1.2492 37 1 1.8936 -2.6778 -2.1389 38 1 3.1299 -2.8851 0.0002 39 1 1.6762 -3.9125 0.0003 40 1 1.7510 -2.3223 3.3863 41 1 3.1257 -2.9639 2.4551 42 1 0.8457 -4.5231 1.8655 43 1 1.8808 -6.8558 5.4786 44 1 -0.1928 -8.5775 4.7128 45 1 1.2732 -9.1144 3.8578 46 1 2.2550 -12.6535 4.5754 47 1 -0.6660 -10.1260 6.4157 48 1 0.7015 -11.0022 7.2898 49 1 1.5439 -8.7863 8.1923 50 1 0.1762 -7.9107 7.3180 51 1 3.9329 -1.2359 0.3590 52 1 3.9337 0.3057 1.2488 53 1 3.9333 -1.2360 2.1388 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327737410.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:24 Heat of formation + Delta-G solvation = -95.661345 kcal Electronic energy + Delta-G solvation = -29594.231535 eV Core-core repulsion = 25657.577141 eV Total energy + Delta-G solvation = -3936.654394 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.76400 -40.84700 -39.58981 -38.49412 -36.42540 -34.99277 -33.96410 -33.11004 -32.81740 -29.90358 -28.82075 -27.61987 -26.99300 -25.45184 -24.22525 -23.17770 -22.95259 -21.88052 -21.35198 -21.21183 -19.67630 -18.67946 -18.04192 -17.84367 -17.11001 -16.83406 -16.66630 -16.59256 -16.11723 -15.96198 -15.62206 -15.31577 -15.23498 -14.74969 -14.58760 -14.45229 -14.22320 -13.91113 -13.70174 -13.60108 -13.40789 -13.18200 -13.01722 -12.81296 -12.78530 -12.75355 -12.47495 -12.40526 -12.38794 -12.13533 -12.04439 -11.82739 -11.70142 -11.55541 -11.00046 -10.87849 -10.85085 -10.76474 -10.68177 -10.46546 -10.27564 -10.08649 -10.02864 -8.13853 -6.25238 0.37359 1.38047 1.42493 1.43237 1.50213 2.16858 2.42063 2.70854 3.15162 3.41709 3.57635 3.60319 3.71024 3.75906 4.15100 4.19658 4.22965 4.26917 4.42292 4.45214 4.48078 4.51882 4.59398 4.60301 4.64643 4.67905 4.72060 4.83673 4.85314 4.89945 4.98923 5.00102 5.03552 5.07337 5.11185 5.14375 5.19938 5.25711 5.28834 5.29445 5.34042 5.41618 5.47995 5.50619 5.56054 5.58672 5.63813 5.73323 5.75259 5.98907 6.34977 6.43775 6.76555 6.82143 6.99711 7.44164 8.94418 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019094 B = 0.002168 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.108836 B =12914.062012 C =13273.066562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.081 4.081 3 H 0.076 0.924 4 C -0.115 4.115 5 C -0.118 4.118 6 C -0.121 4.121 7 C -0.087 4.087 8 H 0.088 0.912 9 C 0.119 3.881 10 N -0.686 5.686 11 C 0.513 3.487 12 O -0.542 6.542 13 C 0.495 3.505 14 O -0.556 6.556 15 N -0.672 5.672 16 C 0.176 3.824 17 C -0.001 4.001 18 C -0.511 4.511 19 H 0.055 0.945 20 C 0.028 3.972 21 N -0.902 5.902 22 Si 0.945 3.055 23 H -0.270 1.270 24 H -0.286 1.286 25 H -0.276 1.276 26 C -0.150 4.150 27 C -0.179 4.179 28 C -0.073 4.073 29 H 0.076 0.924 30 C -0.157 4.157 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.417 0.583 43 H 0.414 0.586 44 H 0.050 0.950 45 H 0.043 0.957 46 H 0.261 0.739 47 H 0.077 0.923 48 H 0.065 0.935 49 H 0.085 0.915 50 H 0.093 0.907 51 H 0.062 0.938 52 H 0.061 0.939 53 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.502 24.805 -10.417 27.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.100 4.100 3 H 0.094 0.906 4 C -0.153 4.153 5 C -0.156 4.156 6 C -0.158 4.158 7 C -0.105 4.105 8 H 0.106 0.894 9 C -0.003 4.003 10 N -0.339 5.339 11 C 0.293 3.707 12 O -0.419 6.419 13 C 0.276 3.724 14 O -0.435 6.435 15 N -0.322 5.322 16 C 0.053 3.947 17 C -0.002 4.002 18 C -0.548 4.548 19 H 0.073 0.927 20 C -0.173 4.173 21 N -0.540 5.540 22 Si 0.771 3.229 23 H -0.195 1.195 24 H -0.211 1.211 25 H -0.202 1.202 26 C -0.188 4.188 27 C -0.216 4.216 28 C -0.092 4.092 29 H 0.094 0.906 30 C -0.214 4.214 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.255 0.745 43 H 0.250 0.750 44 H 0.068 0.932 45 H 0.061 0.939 46 H 0.070 0.930 47 H 0.096 0.904 48 H 0.083 0.917 49 H 0.103 0.897 50 H 0.111 0.889 51 H 0.081 0.919 52 H 0.080 0.920 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.447 24.618 -10.604 26.916 hybrid contribution 0.824 -1.094 0.113 1.374 sum -1.623 23.524 -10.491 25.809 Atomic orbital electron populations 1.21955 0.95138 1.02095 1.01796 1.21082 0.95827 0.99099 0.93984 0.90601 1.21603 1.00820 0.95218 0.97617 1.21535 1.01179 0.95824 0.97033 1.21667 1.01210 0.98597 0.94328 1.21417 1.01383 0.95230 0.92512 0.89408 1.21776 0.98521 0.80429 0.99593 1.45786 1.47676 1.15265 1.25180 1.19972 0.82050 0.85668 0.82975 1.90743 1.35942 1.76063 1.39199 1.20416 0.81869 0.86916 0.83245 1.90705 1.39278 1.75469 1.38097 1.45867 1.54657 1.13058 1.18658 1.20891 0.95826 0.78850 0.99174 1.19063 0.94241 0.99225 0.87676 1.20658 0.91730 1.01110 1.41314 0.92688 1.25632 0.99997 0.97940 0.93757 1.70106 1.34706 1.10766 1.38375 0.85824 0.81078 0.77482 0.78514 1.19511 1.21145 1.20166 1.22458 0.97375 0.94152 1.04856 1.23008 1.03516 0.96740 0.98328 1.21045 0.95877 0.93543 0.98777 0.90569 1.22029 0.95150 1.02192 1.01997 0.92666 0.92446 0.92280 0.91615 0.91706 0.91400 0.92050 0.91668 0.92665 0.90849 0.91188 0.74517 0.74967 0.93174 0.93854 0.92998 0.90417 0.91653 0.89688 0.88916 0.91950 0.91952 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 8.50 71.98 0.61 -0.87 16 2 C -0.08 -0.80 2.72 -10.79 -0.03 -0.83 16 3 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 4 C -0.12 -1.18 5.18 30.59 0.16 -1.02 16 5 C -0.12 -1.40 5.65 30.59 0.17 -1.23 16 6 C -0.12 -1.71 4.80 30.60 0.15 -1.56 16 7 C -0.09 -1.17 1.72 -10.79 -0.02 -1.19 16 8 H 0.09 1.12 6.43 -2.39 -0.02 1.11 16 9 C 0.12 2.23 4.56 86.38 0.39 2.62 16 10 N -0.69 -16.32 5.28 -464.42 -2.45 -18.77 16 11 C 0.51 16.34 7.89 87.27 0.69 17.03 16 12 O -0.54 -19.35 16.50 -3.24 -0.05 -19.40 16 13 C 0.49 18.47 7.88 87.27 0.69 19.15 16 14 O -0.56 -22.68 16.49 -3.26 -0.05 -22.73 16 15 N -0.67 -26.59 5.50 -464.40 -2.55 -29.14 16 16 C 0.18 7.95 5.57 86.38 0.48 8.44 16 17 C 0.00 -0.06 1.38 -52.93 -0.07 -0.13 16 18 C -0.51 -26.99 8.83 25.60 0.23 -26.76 16 19 H 0.05 2.90 7.83 -2.91 -0.02 2.88 16 20 C 0.03 1.50 5.37 84.66 0.45 1.96 16 21 N -0.90 -50.79 12.91 21.45 0.28 -50.52 16 22 Si 0.95 43.06 29.55 68.60 2.03 45.09 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 24 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 25 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 26 C -0.15 -6.69 9.34 30.60 0.29 -6.40 16 27 C -0.18 -7.07 9.82 30.60 0.30 -6.77 16 28 C -0.07 -0.83 2.25 -10.79 -0.02 -0.85 16 29 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 30 C -0.16 -1.87 8.15 71.98 0.59 -1.28 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.06 0.62 4.81 -2.39 -0.01 0.60 16 34 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.06 0.68 6.43 -2.39 -0.02 0.67 16 36 H 0.07 0.78 6.43 -2.39 -0.02 0.77 16 37 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.06 0.98 6.43 -2.39 -0.02 0.97 16 39 H 0.05 0.89 7.18 -2.39 -0.02 0.88 16 40 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 41 H 0.07 1.43 6.71 -2.38 -0.02 1.41 16 42 H 0.42 9.08 7.14 -92.71 -0.66 8.42 16 43 H 0.41 15.70 7.90 -92.71 -0.73 14.97 16 44 H 0.05 2.18 7.94 -2.39 -0.02 2.16 16 45 H 0.04 2.28 8.12 -2.38 -0.02 2.26 16 46 H 0.26 14.14 8.32 -92.71 -0.77 13.37 16 47 H 0.08 3.23 8.08 -2.38 -0.02 3.21 16 48 H 0.06 3.14 8.14 -2.39 -0.02 3.12 16 49 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 50 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 51 H 0.06 0.76 4.80 -2.38 -0.01 0.75 16 52 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 53 H 0.05 0.70 6.54 -2.39 -0.02 0.68 16 Total: -1.00 -61.65 407.78 1.77 -59.88 By element: Atomic # 1 Polarization: 35.77 SS G_CDS: -0.47 Total: 35.30 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: 5.05 Total: 0.30 kcal Atomic # 7 Polarization: -93.71 SS G_CDS: -4.73 Total: -98.43 kcal Atomic # 8 Polarization: -42.02 SS G_CDS: -0.11 Total: -42.13 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -61.65 1.77 -59.88 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327737410.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.779 kcal (2) G-P(sol) polarization free energy of solvation -61.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds