Wall clock time and date at job start Tue Mar 31 2020 19:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47293 * 2 1 4 4 C 1.53004 * 109.47227 * 119.99994 * 2 1 3 5 5 C 1.52995 * 109.47227 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47501 * 300.00169 * 5 4 2 7 7 C 1.53004 * 109.47018 * 59.99703 * 6 5 4 8 8 C 1.52995 * 109.47227 * 300.00465 * 7 6 5 9 9 H 1.09003 * 109.47293 * 299.99994 * 8 7 6 10 10 C 1.53004 * 109.47227 * 179.97438 * 8 7 6 11 11 N 1.46504 * 109.46946 * 64.99774 * 10 8 7 12 12 C 1.34774 * 119.99581 * 180.02562 * 11 10 8 13 13 O 1.21346 * 120.00366 * 0.02562 * 12 11 10 14 14 C 1.49452 * 119.99615 * 180.02562 * 12 11 10 15 15 O 1.21347 * 120.00525 * 353.20821 * 14 12 11 16 16 N 1.34781 * 119.99776 * 173.21016 * 14 12 11 17 17 C 1.46928 * 120.63026 * 351.13885 * 16 14 12 18 18 C 1.52760 * 109.01065 * 233.58653 * 17 16 14 19 19 C 1.53045 * 109.38194 * 305.59032 * 18 17 16 20 20 C 1.50701 * 109.46005 * 181.25949 * 19 18 17 21 21 H 1.07994 * 119.99911 * 239.93233 * 20 19 18 22 22 C 1.37873 * 119.99894 * 59.93331 * 20 19 18 23 23 N 1.31521 * 120.00013 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00084 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47217 * 59.99704 * 24 22 20 26 26 H 1.48494 * 109.47247 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47112 * 300.00034 * 24 22 20 28 28 C 1.53043 * 109.53991 * 61.23932 * 19 18 17 29 29 C 1.46928 * 120.63064 * 171.42122 * 16 14 12 30 30 H 1.09003 * 109.47293 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47308 * 300.00096 * 1 2 3 32 32 H 1.09004 * 109.46873 * 59.99983 * 1 2 3 33 33 H 1.09008 * 109.46988 * 60.00277 * 4 2 1 34 34 H 1.08998 * 109.46903 * 300.00158 * 4 2 1 35 35 H 1.09007 * 109.47575 * 180.02562 * 5 4 2 36 36 H 1.09003 * 109.47293 * 60.00006 * 5 4 2 37 37 H 1.09003 * 109.46714 * 300.00192 * 6 5 4 38 38 H 1.08993 * 109.47666 * 180.02562 * 6 5 4 39 39 H 1.08998 * 109.46903 * 180.02562 * 7 6 5 40 40 H 1.09000 * 109.46485 * 60.00538 * 7 6 5 41 41 H 1.08994 * 109.46906 * 305.00146 * 10 8 7 42 42 H 1.09000 * 109.46975 * 184.99770 * 10 8 7 43 43 H 0.96999 * 119.99648 * 0.02562 * 11 10 8 44 44 H 1.09001 * 109.58499 * 353.42573 * 17 16 14 45 45 H 1.08997 * 109.58497 * 113.84590 * 17 16 14 46 46 H 1.08995 * 109.56385 * 185.55545 * 18 17 16 47 47 H 1.09000 * 109.38814 * 65.51524 * 18 17 16 48 48 H 1.08999 * 109.44595 * 301.22796 * 19 18 17 49 49 H 0.96997 * 119.99313 * 180.02562 * 23 22 20 50 50 H 1.08995 * 109.50231 * 178.68510 * 28 19 18 51 51 H 1.09003 * 109.52300 * 58.59530 * 28 19 18 52 52 H 1.08998 * 109.58703 * 246.15451 * 29 16 14 53 53 H 1.09005 * 109.58451 * 6.58154 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5699 -0.7218 1.2489 6 6 4.0795 -1.4434 -0.0003 7 6 3.5695 -0.7221 -1.2496 8 6 2.0395 -0.7216 -1.2492 9 1 1.6758 -1.7491 -1.2490 10 6 1.5295 0.0002 -2.4982 11 7 1.9166 -0.7562 -3.6916 12 6 1.5733 -0.3067 -4.9150 13 8 0.9441 0.7247 -5.0280 14 6 1.9677 -1.0786 -6.1324 15 8 2.6999 -2.0408 -6.0300 16 7 1.5101 -0.7059 -7.3442 17 6 0.4754 0.3299 -7.4675 18 6 -0.6806 -0.2184 -8.3022 19 6 -0.1424 -0.7322 -9.6396 20 6 -1.2855 -1.2452 -10.4769 21 1 -1.2995 -2.2763 -10.7979 22 6 -2.3134 -0.3983 -10.8333 23 7 -2.2965 0.8573 -10.4420 24 14 -3.7307 -1.0343 -11.8707 25 1 -4.4111 -2.1422 -11.1531 26 1 -4.6985 0.0653 -12.1140 27 1 -3.2094 -1.5319 -13.1690 28 6 0.8547 -1.8658 -9.3886 29 6 2.0321 -1.3322 -8.5665 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.6767 -1.7490 1.2492 34 1 1.6766 -0.2074 2.1392 35 1 3.9334 -1.2361 2.1387 36 1 3.9337 0.3057 1.2487 37 1 3.7158 -2.4709 -0.0001 38 1 5.1694 -1.4442 -0.0003 39 1 3.9321 -1.2365 -2.1395 40 1 3.9332 0.3054 -1.2497 41 1 1.9645 0.9986 -2.5439 42 1 0.4432 0.0788 -2.4543 43 1 2.4199 -1.5804 -3.6013 44 1 0.1118 0.6029 -6.4769 45 1 0.8940 1.2076 -7.9600 46 1 -1.4079 0.5730 -8.4826 47 1 -1.1591 -1.0366 -7.7641 48 1 0.3573 0.0809 -10.1661 49 1 -3.0199 1.4530 -10.6925 50 1 1.2199 -2.2470 -10.3422 51 1 0.3625 -2.6690 -8.8401 52 1 2.5802 -0.5928 -9.1505 53 1 2.6952 -2.1555 -8.3008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327821643.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:14 Heat of formation + Delta-G solvation = -110.125448 kcal Electronic energy + Delta-G solvation = -29983.897265 eV Core-core repulsion = 26046.615660 eV Total energy + Delta-G solvation = -3937.281605 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.02378 -40.42505 -39.50830 -38.58867 -36.20149 -35.22873 -33.63382 -33.03706 -32.07089 -31.78841 -28.63606 -27.91579 -26.74816 -25.51269 -24.16087 -23.66911 -22.49675 -21.98447 -21.58518 -20.76651 -20.31573 -18.73704 -18.33959 -18.05485 -17.20074 -16.88634 -16.48370 -16.23082 -15.89873 -15.72253 -15.36361 -15.27879 -15.00000 -14.85588 -14.77478 -14.64028 -14.39714 -14.18584 -13.93350 -13.61574 -13.33825 -13.16663 -13.01101 -12.84201 -12.80196 -12.69101 -12.52969 -12.39040 -12.34862 -12.15632 -11.96344 -11.91630 -11.73265 -11.51248 -11.31132 -11.07496 -11.01690 -10.91352 -10.89236 -10.45713 -10.32595 -10.04921 -9.69149 -8.07398 -6.21440 0.31112 1.30479 1.42572 1.43139 1.50811 2.08607 2.43950 2.48493 3.18912 3.27995 3.60137 3.72680 3.78932 4.10447 4.11762 4.25704 4.27151 4.30691 4.32169 4.45244 4.49206 4.52441 4.55426 4.59541 4.61936 4.68923 4.73191 4.79586 4.85291 4.88423 4.94397 4.96747 5.08000 5.12402 5.14388 5.18663 5.22560 5.24467 5.32478 5.34702 5.38067 5.39312 5.45291 5.47708 5.49223 5.62576 5.64372 5.95743 6.01321 6.10083 6.27645 6.38053 6.67439 6.88394 6.91987 7.46279 8.96110 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.021022 B = 0.002247 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.591892 B =12457.132524 C =13274.004797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.079 4.079 3 H 0.074 0.926 4 C -0.110 4.110 5 C -0.120 4.120 6 C -0.118 4.118 7 C -0.117 4.117 8 C -0.086 4.086 9 H 0.083 0.917 10 C 0.117 3.883 11 N -0.683 5.683 12 C 0.509 3.491 13 O -0.528 6.528 14 C 0.500 3.500 15 O -0.550 6.550 16 N -0.571 5.571 17 C 0.084 3.916 18 C -0.114 4.114 19 C 0.043 3.957 20 C -0.534 4.534 21 H 0.051 0.949 22 C 0.014 3.986 23 N -0.914 5.914 24 Si 0.952 3.048 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.272 1.272 28 C -0.113 4.113 29 C 0.112 3.888 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.418 0.582 44 H 0.128 0.872 45 H 0.059 0.941 46 H 0.077 0.923 47 H 0.024 0.976 48 H 0.003 0.997 49 H 0.261 0.739 50 H 0.072 0.928 51 H 0.044 0.956 52 H 0.079 0.921 53 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.361 -2.240 24.378 26.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.098 4.098 3 H 0.092 0.908 4 C -0.148 4.148 5 C -0.157 4.157 6 C -0.155 4.155 7 C -0.155 4.155 8 C -0.104 4.104 9 H 0.101 0.899 10 C -0.005 4.005 11 N -0.336 5.336 12 C 0.290 3.710 13 O -0.407 6.407 14 C 0.283 3.717 15 O -0.430 6.430 16 N -0.303 5.303 17 C -0.037 4.037 18 C -0.152 4.152 19 C 0.024 3.976 20 C -0.572 4.572 21 H 0.069 0.931 22 C -0.185 4.185 23 N -0.553 5.553 24 Si 0.778 3.222 25 H -0.200 1.200 26 H -0.210 1.210 27 H -0.197 1.197 28 C -0.151 4.151 29 C -0.010 4.010 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.256 0.744 44 H 0.145 0.855 45 H 0.077 0.923 46 H 0.096 0.904 47 H 0.043 0.957 48 H 0.022 0.978 49 H 0.070 0.930 50 H 0.091 0.909 51 H 0.063 0.937 52 H 0.097 0.903 53 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 11.195 -1.838 24.343 26.857 hybrid contribution -0.827 -0.419 -1.048 1.399 sum 10.368 -2.256 23.295 25.598 Atomic orbital electron populations 1.21952 0.95103 1.02125 1.02048 1.21051 0.95478 0.99666 0.93592 0.90804 1.21566 0.95526 1.00716 0.96983 1.21548 0.95547 1.00821 0.97805 1.21519 1.00502 0.99405 0.94116 1.21628 0.94070 1.01316 0.98477 1.21405 0.96209 1.00212 0.92613 0.89916 1.21811 1.00753 0.95477 0.82503 1.45793 1.55421 1.27990 1.04414 1.20046 0.80324 0.85425 0.85238 1.90540 1.39508 1.25007 1.85617 1.20254 0.81830 0.84627 0.84959 1.90679 1.38757 1.27366 1.86212 1.48203 1.38178 1.38440 1.05450 1.22703 0.87753 0.88671 1.04554 1.21734 0.97188 1.00339 0.95969 1.18649 0.93147 0.93099 0.92687 1.21519 1.06832 0.96524 1.32371 0.93066 1.25709 1.00492 0.95126 0.97186 1.69971 1.33604 1.05276 1.46477 0.85712 0.79253 0.77842 0.79430 1.19987 1.20974 1.19678 1.21855 0.95700 0.98626 0.98939 1.21858 0.96528 0.98443 0.84167 0.92517 0.91837 0.92925 0.91842 0.91217 0.91414 0.92010 0.91810 0.91644 0.92158 0.91780 0.91099 0.90770 0.74437 0.85506 0.92276 0.90433 0.95735 0.97841 0.92960 0.90935 0.93669 0.90298 0.88710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 8.85 71.98 0.64 -1.23 16 2 C -0.08 -0.88 2.25 -10.79 -0.02 -0.91 16 3 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 4 C -0.11 -1.05 5.20 30.59 0.16 -0.89 16 5 C -0.12 -1.11 5.92 30.59 0.18 -0.93 16 6 C -0.12 -1.22 5.92 30.60 0.18 -1.04 16 7 C -0.12 -1.45 5.08 30.59 0.16 -1.29 16 8 C -0.09 -1.10 1.75 -10.79 -0.02 -1.12 16 9 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 10 C 0.12 2.10 4.85 86.38 0.42 2.52 16 11 N -0.68 -15.27 5.28 -464.41 -2.45 -17.72 16 12 C 0.51 15.49 7.74 87.27 0.68 16.16 16 13 O -0.53 -18.34 13.19 -3.24 -0.04 -18.38 16 14 C 0.50 17.23 7.73 87.27 0.67 17.91 16 15 O -0.55 -19.52 15.93 -3.24 -0.05 -19.57 16 16 N -0.57 -21.27 2.98 -821.29 -2.45 -23.72 16 17 C 0.08 3.41 5.95 86.22 0.51 3.93 16 18 C -0.11 -5.45 5.14 30.53 0.16 -5.29 16 19 C 0.04 2.12 2.07 -11.51 -0.02 2.10 16 20 C -0.53 -29.33 8.56 25.60 0.22 -29.11 16 21 H 0.05 2.77 7.74 -2.91 -0.02 2.74 16 22 C 0.01 0.75 5.30 84.65 0.45 1.20 16 23 N -0.91 -52.29 11.30 21.45 0.24 -52.04 16 24 Si 0.95 43.60 29.54 68.60 2.03 45.63 16 25 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 26 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 27 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 28 C -0.11 -4.65 5.30 30.67 0.16 -4.48 16 29 C 0.11 3.97 6.45 86.36 0.56 4.53 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.05 0.73 6.32 -2.38 -0.02 0.72 16 33 H 0.06 0.61 8.14 -2.38 -0.02 0.60 16 34 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 36 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.06 0.81 7.18 -2.39 -0.02 0.79 16 40 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.07 1.45 6.17 -2.39 -0.01 1.43 16 43 H 0.42 8.25 7.14 -92.71 -0.66 7.59 16 44 H 0.13 5.08 4.33 -46.12 -0.20 4.88 16 45 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 46 H 0.08 4.18 6.03 -2.39 -0.01 4.16 16 47 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 49 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 50 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 51 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 52 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 53 H 0.09 3.14 7.01 -2.38 -0.02 3.12 16 Total: -1.00 -62.41 400.38 2.39 -60.02 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 0.04 Total: 23.71 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 5.07 Total: 2.07 kcal Atomic # 7 Polarization: -88.83 SS G_CDS: -4.65 Total: -93.48 kcal Atomic # 8 Polarization: -37.86 SS G_CDS: -0.09 Total: -37.96 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -62.41 2.39 -60.02 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327821643.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.101 kcal (2) G-P(sol) polarization free energy of solvation -62.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds