Wall clock time and date at job start Tue Mar 31 2020 19:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09009 * 109.47433 * 2 1 4 4 C 1.52997 * 109.47536 * 239.99512 * 2 1 3 5 5 C 1.53003 * 109.47287 * 179.97438 * 4 2 1 6 6 C 1.53006 * 109.46707 * 60.00600 * 5 4 2 7 7 C 1.53001 * 109.47092 * 299.99681 * 6 5 4 8 8 C 1.52999 * 109.47113 * 59.99885 * 7 6 5 9 9 H 1.09001 * 109.47525 * 60.00230 * 8 7 6 10 10 C 1.52997 * 109.47316 * 180.02562 * 8 7 6 11 11 N 1.46506 * 109.47118 * 295.00184 * 10 8 7 12 12 C 1.34770 * 120.00084 * 180.02562 * 11 10 8 13 13 O 1.21343 * 120.00486 * 359.97438 * 12 11 10 14 14 C 1.49457 * 119.99865 * 180.02562 * 12 11 10 15 15 O 1.21345 * 119.99996 * 6.66818 * 14 12 11 16 16 N 1.34777 * 119.99835 * 186.67240 * 14 12 11 17 17 C 1.46921 * 120.62998 * 7.17726 * 16 14 12 18 18 C 1.53197 * 108.77747 * 126.39313 * 17 16 14 19 19 C 1.53041 * 109.31515 * 54.62814 * 18 17 16 20 20 C 1.50694 * 109.46210 * 178.61579 * 19 18 17 21 21 H 1.07998 * 119.99802 * 25.29667 * 20 19 18 22 22 C 1.37871 * 120.00465 * 205.29422 * 20 19 18 23 23 N 1.31509 * 120.00598 * 175.18633 * 22 20 19 24 24 Si 1.86807 * 119.99545 * 355.18822 * 22 20 19 25 25 H 1.48501 * 109.46831 * 95.02083 * 24 22 20 26 26 H 1.48499 * 109.47073 * 215.01393 * 24 22 20 27 27 H 1.48490 * 109.47352 * 335.01934 * 24 22 20 28 28 C 1.53042 * 109.53763 * 298.63843 * 19 18 17 29 29 C 1.46928 * 120.62891 * 187.17275 * 16 14 12 30 30 H 1.08995 * 109.47253 * 300.00496 * 1 2 3 31 31 H 1.09010 * 109.46912 * 60.00048 * 1 2 3 32 32 H 1.08995 * 109.47235 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47213 * 300.00447 * 4 2 1 34 34 H 1.09000 * 109.46605 * 60.00347 * 4 2 1 35 35 H 1.09003 * 109.46921 * 179.97438 * 5 4 2 36 36 H 1.08995 * 109.47667 * 300.00546 * 5 4 2 37 37 H 1.08995 * 109.47101 * 59.99599 * 6 5 4 38 38 H 1.08992 * 109.47069 * 179.97438 * 6 5 4 39 39 H 1.09006 * 109.47093 * 300.00482 * 7 6 5 40 40 H 1.08999 * 109.47408 * 180.02562 * 7 6 5 41 41 H 1.08999 * 109.47496 * 175.00341 * 10 8 7 42 42 H 1.08999 * 109.47483 * 55.00225 * 10 8 7 43 43 H 0.97001 * 119.99614 * 359.97438 * 11 10 8 44 44 H 1.08995 * 109.59187 * 6.60403 * 17 16 14 45 45 H 1.08999 * 109.58351 * 246.17439 * 17 16 14 46 46 H 1.09002 * 109.49250 * 294.67830 * 18 17 16 47 47 H 1.08995 * 109.50231 * 174.58466 * 18 17 16 48 48 H 1.09003 * 109.45584 * 58.66109 * 19 18 17 49 49 H 0.97003 * 120.00709 * 180.02562 * 23 22 20 50 50 H 1.09000 * 109.49664 * 181.31095 * 28 19 18 51 51 H 1.08994 * 109.50187 * 301.41208 * 28 19 18 52 52 H 1.08993 * 109.58330 * 113.82033 * 29 16 14 53 53 H 1.08998 * 109.58653 * 353.39644 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5701 -0.7207 -1.2494 6 6 4.0805 -1.4417 -0.0001 7 6 3.5704 -0.7204 1.2492 8 6 2.0404 -0.7208 1.2493 9 1 1.6773 -1.7486 1.2496 10 6 1.5303 0.0010 2.4982 11 7 1.9183 -0.7548 3.6918 12 6 1.5743 -0.3058 4.9150 13 8 0.9437 0.7247 5.0280 14 6 1.9706 -1.0765 6.1327 15 8 2.7031 -2.0385 6.0301 16 7 1.5143 -0.7031 7.3446 17 6 0.5060 0.3580 7.4705 18 6 -0.6704 -0.1749 8.2947 19 6 -0.1509 -0.7101 9.6310 20 6 -1.3094 -1.2041 10.4585 21 1 -2.2187 -1.5289 9.9748 22 6 -1.2085 -1.2415 11.8330 23 7 -2.2502 -1.5821 12.5599 24 14 0.4080 -0.8081 12.6629 25 1 0.3937 0.6234 13.0575 26 1 0.5861 -1.6528 13.8712 27 1 1.5291 -1.0504 11.7199 28 6 0.8225 -1.8634 9.3768 29 6 2.0158 -1.3496 8.5650 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 1.6767 -1.7489 -1.2491 34 1 1.6768 -0.2075 -2.1391 35 1 3.9334 -1.2350 -2.1391 36 1 3.9331 0.3070 -1.2496 37 1 3.7175 -2.4694 0.0001 38 1 5.1704 -1.4417 -0.0004 39 1 3.9334 0.3075 1.2489 40 1 3.9344 -1.2337 2.1392 41 1 0.4440 0.0788 2.4547 42 1 1.9646 0.9997 2.5435 43 1 2.4221 -1.5788 3.6015 44 1 0.1561 0.6490 6.4801 45 1 0.9437 1.2201 7.9736 46 1 -1.1632 -0.9786 7.7477 47 1 -1.3814 0.6308 8.4772 48 1 0.3634 0.0879 10.1665 49 1 -2.1793 -1.6080 13.5270 50 1 1.1742 -2.2594 10.3295 51 1 0.3157 -2.6513 8.8197 52 1 2.5767 -0.6267 9.1573 53 1 2.6621 -2.1853 8.2967 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327821644.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:17 Heat of formation + Delta-G solvation = -109.571062 kcal Electronic energy + Delta-G solvation = -29951.605324 eV Core-core repulsion = 26014.347759 eV Total energy + Delta-G solvation = -3937.257565 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.04965 -40.43940 -39.52738 -38.66854 -36.21017 -35.17559 -33.63646 -33.38597 -32.07617 -32.02203 -28.81051 -27.97995 -26.73680 -25.38913 -24.37663 -23.51554 -22.46798 -21.98612 -21.59057 -20.77057 -20.32560 -19.01706 -18.63967 -18.11452 -17.20965 -16.92557 -16.32169 -16.25968 -15.92343 -15.74030 -15.35543 -15.34383 -15.03754 -14.92237 -14.85990 -14.83109 -14.44415 -14.20478 -14.01633 -13.76976 -13.55834 -13.30392 -13.01790 -12.89326 -12.83890 -12.68851 -12.53578 -12.37519 -12.30902 -12.12369 -11.92977 -11.73137 -11.67905 -11.48294 -11.31113 -11.28958 -11.15844 -10.91953 -10.90616 -10.64655 -10.32853 -10.08015 -9.71751 -8.26939 -6.30854 0.30550 1.27677 1.37690 1.39997 1.51340 2.08310 2.38111 2.46283 3.08639 3.26137 3.60457 3.72988 3.79025 4.02750 4.12069 4.20409 4.24441 4.25816 4.26416 4.32270 4.45761 4.49401 4.52669 4.59697 4.61888 4.62330 4.70140 4.75946 4.79171 4.85696 4.89202 4.95725 4.96704 5.05164 5.08401 5.12819 5.15652 5.22881 5.25662 5.30897 5.34653 5.35800 5.40848 5.46742 5.48321 5.56592 5.64502 5.69816 5.72883 5.98495 6.24747 6.34372 6.66150 6.76215 6.90185 7.34921 8.90093 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.028219 B = 0.002183 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.994199 B =12824.585543 C =13372.619646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.079 4.079 3 H 0.075 0.925 4 C -0.111 4.111 5 C -0.120 4.120 6 C -0.119 4.119 7 C -0.117 4.117 8 C -0.087 4.087 9 H 0.081 0.919 10 C 0.117 3.883 11 N -0.684 5.684 12 C 0.512 3.488 13 O -0.525 6.525 14 C 0.500 3.500 15 O -0.551 6.551 16 N -0.573 5.573 17 C 0.074 3.926 18 C -0.110 4.110 19 C 0.013 3.987 20 C -0.514 4.514 21 H 0.025 0.975 22 C 0.007 3.993 23 N -0.953 5.953 24 Si 0.938 3.062 25 H -0.274 1.274 26 H -0.292 1.292 27 H -0.222 1.222 28 C -0.124 4.124 29 C 0.109 3.891 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.417 0.583 44 H 0.141 0.859 45 H 0.077 0.923 46 H 0.041 0.959 47 H 0.069 0.931 48 H 0.036 0.964 49 H 0.264 0.736 50 H 0.065 0.935 51 H 0.044 0.956 52 H 0.083 0.917 53 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.240 3.961 -29.345 32.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.097 4.097 3 H 0.093 0.907 4 C -0.149 4.149 5 C -0.157 4.157 6 C -0.156 4.156 7 C -0.155 4.155 8 C -0.105 4.105 9 H 0.100 0.900 10 C -0.005 4.005 11 N -0.337 5.337 12 C 0.293 3.707 13 O -0.403 6.403 14 C 0.283 3.717 15 O -0.430 6.430 16 N -0.304 5.304 17 C -0.046 4.046 18 C -0.149 4.149 19 C -0.006 4.006 20 C -0.552 4.552 21 H 0.044 0.956 22 C -0.190 4.190 23 N -0.594 5.594 24 Si 0.761 3.239 25 H -0.199 1.199 26 H -0.218 1.218 27 H -0.144 1.144 28 C -0.162 4.162 29 C -0.013 4.013 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.255 0.745 44 H 0.158 0.842 45 H 0.095 0.905 46 H 0.060 0.940 47 H 0.087 0.913 48 H 0.054 0.946 49 H 0.073 0.927 50 H 0.083 0.917 51 H 0.063 0.937 52 H 0.101 0.899 53 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 14.116 4.163 -29.171 32.673 hybrid contribution 0.061 -0.530 1.228 1.339 sum 14.176 3.633 -27.943 31.543 Atomic orbital electron populations 1.21950 0.95031 1.02102 1.02123 1.21047 0.95515 0.99676 0.93513 0.90707 1.21568 0.95487 1.00704 0.97102 1.21548 0.95590 1.00826 0.97766 1.21521 1.00471 0.99397 0.94226 1.21626 0.94148 1.01325 0.98369 1.21406 0.96132 1.00225 0.92771 0.90031 1.21814 1.00853 0.95479 0.82340 1.45821 1.55262 1.28035 1.04534 1.19961 0.80329 0.85351 0.85074 1.90477 1.39603 1.24880 1.85379 1.20293 0.81778 0.84599 0.84985 1.90700 1.38522 1.27600 1.86202 1.48147 1.39854 1.37116 1.05318 1.22998 0.87737 0.88399 1.05503 1.21796 0.97143 1.00117 0.95810 1.19108 0.93641 0.93986 0.93854 1.21278 0.99936 1.42508 0.91495 0.95624 1.26006 1.00051 0.94707 0.98220 1.70081 1.32202 1.50984 1.06108 0.85935 0.81410 0.78202 0.78317 1.19931 1.21844 1.14449 1.22185 0.95677 0.99428 0.98928 1.21880 0.96635 0.98435 0.84368 0.92688 0.91905 0.92606 0.91933 0.91265 0.91550 0.91952 0.91912 0.91726 0.91688 0.92171 0.90538 0.90874 0.74493 0.84188 0.90477 0.93982 0.91261 0.94599 0.92724 0.91694 0.93699 0.89871 0.89080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 8.85 71.98 0.64 -0.94 16 2 C -0.08 -0.75 2.25 -10.79 -0.02 -0.77 16 3 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 4 C -0.11 -0.93 5.20 30.59 0.16 -0.77 16 5 C -0.12 -0.99 5.92 30.60 0.18 -0.81 16 6 C -0.12 -1.11 5.92 30.60 0.18 -0.93 16 7 C -0.12 -1.26 5.08 30.59 0.16 -1.10 16 8 C -0.09 -0.95 1.75 -10.79 -0.02 -0.97 16 9 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 10 C 0.12 1.78 4.85 86.38 0.42 2.20 16 11 N -0.68 -13.28 5.27 -464.41 -2.45 -15.73 16 12 C 0.51 13.51 7.75 87.27 0.68 14.19 16 13 O -0.52 -15.37 13.14 -3.22 -0.04 -15.41 16 14 C 0.50 15.46 7.74 87.27 0.68 16.14 16 15 O -0.55 -18.33 15.92 -3.23 -0.05 -18.38 16 16 N -0.57 -18.75 2.97 -820.48 -2.44 -21.19 16 17 C 0.07 2.41 6.02 86.37 0.52 2.93 16 18 C -0.11 -4.32 5.34 30.67 0.16 -4.16 16 19 C 0.01 0.59 1.61 -11.51 -0.02 0.57 16 20 C -0.51 -29.00 8.88 25.60 0.23 -28.77 16 21 H 0.03 1.63 8.05 -2.91 -0.02 1.60 16 22 C 0.01 0.38 5.47 84.65 0.46 0.84 16 23 N -0.95 -59.81 13.96 21.44 0.30 -59.51 16 24 Si 0.94 42.81 26.17 68.60 1.80 44.60 16 25 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 26 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 27 H -0.22 -8.86 5.42 99.48 0.54 -8.32 16 28 C -0.12 -4.99 4.89 30.67 0.15 -4.84 16 29 C 0.11 3.62 6.44 86.36 0.56 4.18 16 30 H 0.05 0.64 6.32 -2.39 -0.02 0.62 16 31 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 40 H 0.06 0.72 7.18 -2.39 -0.02 0.70 16 41 H 0.08 1.25 6.17 -2.39 -0.01 1.23 16 42 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.42 7.29 7.15 -92.71 -0.66 6.63 16 44 H 0.14 4.43 4.22 -55.25 -0.23 4.20 16 45 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 48 H 0.04 1.56 6.24 -2.39 -0.01 1.55 16 49 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 50 H 0.06 2.65 5.79 -2.39 -0.01 2.64 16 51 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 52 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 53 H 0.09 2.94 7.00 -2.39 -0.02 2.92 16 Total: -1.00 -67.59 395.90 2.06 -65.54 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: -0.16 Total: 23.08 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 5.10 Total: -3.00 kcal Atomic # 7 Polarization: -91.84 SS G_CDS: -4.59 Total: -96.42 kcal Atomic # 8 Polarization: -33.70 SS G_CDS: -0.09 Total: -33.80 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.80 Total: 44.60 kcal Total: -67.59 2.06 -65.54 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327821644.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.035 kcal (2) G-P(sol) polarization free energy of solvation -67.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds