Wall clock time and date at job start Tue Mar 31 2020 19:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47383 * 2 1 4 4 C 1.53001 * 109.46959 * 119.99951 * 2 1 3 5 5 C 1.52995 * 109.47335 * 59.99794 * 4 2 1 6 6 C 1.52996 * 109.47232 * 59.99975 * 5 4 2 7 7 C 1.52999 * 109.47206 * 300.00554 * 6 5 4 8 8 C 1.52995 * 109.47477 * 59.99596 * 7 6 5 9 9 H 1.08998 * 109.46925 * 60.00354 * 8 7 6 10 10 C 1.53001 * 109.47335 * 180.02562 * 8 7 6 11 11 N 1.46506 * 109.46728 * 295.00076 * 10 8 7 12 12 C 1.34771 * 119.99438 * 180.02562 * 11 10 8 13 13 O 1.21349 * 120.00707 * 359.97438 * 12 11 10 14 14 C 1.49462 * 119.99645 * 179.97438 * 12 11 10 15 15 O 1.21343 * 119.99806 * 6.74178 * 14 12 11 16 16 N 1.34773 * 120.00039 * 186.74435 * 14 12 11 17 17 C 1.46930 * 120.62827 * 8.42602 * 16 14 12 18 18 C 1.53623 * 108.54422 * 126.37178 * 17 16 14 19 19 C 1.53044 * 109.24351 * 54.85266 * 18 17 16 20 20 C 1.50700 * 109.45772 * 178.49315 * 19 18 17 21 21 H 1.08004 * 119.99816 * 120.07193 * 20 19 18 22 22 C 1.37875 * 120.00301 * 300.06461 * 20 19 18 23 23 N 1.31517 * 119.99712 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00210 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47136 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46813 * 120.00157 * 24 22 20 27 27 H 1.48497 * 109.47502 * 240.00109 * 24 22 20 28 28 C 1.53036 * 109.53686 * 298.51089 * 19 18 17 29 29 C 1.46920 * 120.63401 * 188.70472 * 16 14 12 30 30 H 1.09001 * 109.47458 * 300.00589 * 1 2 3 31 31 H 1.09002 * 109.47082 * 60.00381 * 1 2 3 32 32 H 1.09001 * 109.47383 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47084 * 300.00099 * 4 2 1 34 34 H 1.09002 * 109.47682 * 180.02562 * 4 2 1 35 35 H 1.08999 * 109.47679 * 180.02562 * 5 4 2 36 36 H 1.09000 * 109.47351 * 300.00326 * 5 4 2 37 37 H 1.08998 * 109.47137 * 60.00164 * 6 5 4 38 38 H 1.09001 * 109.47417 * 180.02562 * 6 5 4 39 39 H 1.09000 * 109.46800 * 299.99296 * 7 6 5 40 40 H 1.08996 * 109.46999 * 180.02562 * 7 6 5 41 41 H 1.08996 * 109.47290 * 54.99491 * 10 8 7 42 42 H 1.08996 * 109.47164 * 175.00431 * 10 8 7 43 43 H 0.97000 * 120.00206 * 359.97438 * 11 10 8 44 44 H 1.09001 * 109.58346 * 246.20020 * 17 16 14 45 45 H 1.08995 * 109.59263 * 6.62417 * 17 16 14 46 46 H 1.08998 * 109.63150 * 294.86065 * 18 17 16 47 47 H 1.08999 * 109.46099 * 174.74113 * 18 17 16 48 48 H 1.08997 * 109.44706 * 58.52562 * 19 18 17 49 49 H 0.97000 * 120.00167 * 179.97438 * 23 22 20 50 50 H 1.09000 * 109.50155 * 301.41945 * 28 19 18 51 51 H 1.09001 * 109.52226 * 181.32782 * 28 19 18 52 52 H 1.09005 * 109.58525 * 353.37163 * 29 16 14 53 53 H 1.09008 * 109.58966 * 113.65419 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.5299 -2.1637 1.2493 6 6 2.0398 -2.8850 0.0002 7 6 1.5299 -2.1638 -1.2491 8 6 2.0400 -0.7213 -1.2492 9 1 3.1300 -0.7214 -1.2492 10 6 1.5296 0.0001 -2.4982 11 7 2.1133 -0.6175 -3.6916 12 6 1.8048 -0.1436 -4.9149 13 8 1.0432 0.7944 -5.0280 14 6 2.4007 -0.7732 -6.1324 15 8 3.0634 -1.7845 -6.0297 16 7 2.2021 -0.2178 -7.3441 17 6 1.5624 1.0991 -7.4682 18 6 2.4752 2.0089 -8.3042 19 6 2.7772 1.3288 -9.6415 20 6 3.6424 2.2334 -10.4807 21 1 4.6182 1.9009 -10.8029 22 6 3.1882 3.4853 -10.8374 23 7 2.0001 3.8903 -10.4448 24 14 4.2603 4.6063 -11.8783 25 1 5.5407 3.9202 -12.1868 26 1 3.5551 4.9300 -13.1444 27 1 4.5373 5.8597 -11.1316 28 6 3.5117 0.0098 -9.3905 29 6 2.6156 -0.9202 -8.5665 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6765 -0.2074 2.1393 34 1 3.1299 -0.7209 1.2496 35 1 1.8928 -2.6774 2.1395 36 1 0.4399 -2.1637 1.2493 37 1 3.1298 -2.8851 0.0002 38 1 1.6761 -3.9126 0.0000 39 1 0.4400 -2.1638 -1.2492 40 1 1.8929 -2.6779 -2.1390 41 1 0.4433 -0.0768 -2.5438 42 1 1.8180 1.0503 -2.4546 43 1 2.7224 -1.3670 -3.6012 44 1 0.5972 0.9913 -7.9630 45 1 1.4212 1.5316 -6.4777 46 1 3.4072 2.1856 -7.7673 47 1 1.9735 2.9596 -8.4847 48 1 1.8430 1.1300 -10.1667 49 1 1.6807 4.7713 -10.6955 50 1 4.4339 0.2053 -8.8433 51 1 3.7475 -0.4629 -10.3439 52 1 3.1696 -1.8206 -8.3009 53 1 1.7344 -1.1916 -9.1479 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327821646.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:25 Heat of formation + Delta-G solvation = -106.487882 kcal Electronic energy + Delta-G solvation = -30041.674589 eV Core-core repulsion = 26104.550721 eV Total energy + Delta-G solvation = -3937.123868 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.02743 -40.58851 -39.59691 -38.57215 -36.23956 -35.23468 -33.07206 -33.00314 -32.03898 -31.73533 -28.68179 -28.08200 -26.91082 -25.50637 -24.17359 -23.67427 -23.03045 -22.14765 -21.65460 -20.55807 -19.33549 -18.68528 -18.32909 -18.06177 -17.18594 -16.96557 -16.64261 -16.48357 -16.06834 -15.79144 -15.31949 -15.25514 -14.92327 -14.85851 -14.65956 -14.63273 -14.38624 -14.01684 -13.82891 -13.62355 -13.55991 -13.34187 -13.16555 -12.84518 -12.82095 -12.49968 -12.41003 -12.36407 -12.33103 -12.15682 -11.96535 -11.92914 -11.77448 -11.52290 -11.08742 -11.06998 -11.01752 -10.90783 -10.82171 -10.46533 -10.34529 -10.04653 -9.68551 -8.07840 -6.21778 0.31191 1.30676 1.40019 1.42631 1.53169 2.08797 2.43622 2.48713 3.18541 3.27988 3.61020 3.73823 3.80239 4.10305 4.19221 4.27240 4.29521 4.29990 4.31387 4.46329 4.48498 4.49545 4.52819 4.54792 4.65466 4.71281 4.74719 4.79261 4.83600 4.89322 4.94285 4.99527 5.08712 5.14090 5.14356 5.18635 5.21926 5.26140 5.30490 5.33319 5.38029 5.41925 5.47180 5.48780 5.52021 5.62876 5.69044 5.95778 6.01425 6.10176 6.27744 6.37965 6.67649 6.88504 6.92078 7.46074 8.95968 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.022717 B = 0.002202 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.236128 B =12714.664749 C =13364.256735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.081 4.081 3 H 0.073 0.927 4 C -0.111 4.111 5 C -0.121 4.121 6 C -0.117 4.117 7 C -0.119 4.119 8 C -0.086 4.086 9 H 0.083 0.917 10 C 0.119 3.881 11 N -0.683 5.683 12 C 0.509 3.491 13 O -0.528 6.528 14 C 0.500 3.500 15 O -0.551 6.551 16 N -0.571 5.571 17 C 0.083 3.917 18 C -0.113 4.113 19 C 0.042 3.958 20 C -0.532 4.532 21 H 0.051 0.949 22 C 0.013 3.987 23 N -0.914 5.914 24 Si 0.952 3.048 25 H -0.269 1.269 26 H -0.280 1.280 27 H -0.282 1.282 28 C -0.113 4.113 29 C 0.112 3.888 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.418 0.582 44 H 0.059 0.941 45 H 0.129 0.871 46 H 0.024 0.976 47 H 0.076 0.924 48 H 0.004 0.996 49 H 0.261 0.739 50 H 0.044 0.956 51 H 0.072 0.928 52 H 0.094 0.906 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.260 -11.869 24.404 27.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.100 4.100 3 H 0.092 0.908 4 C -0.149 4.149 5 C -0.159 4.159 6 C -0.155 4.155 7 C -0.156 4.156 8 C -0.105 4.105 9 H 0.101 0.899 10 C -0.004 4.004 11 N -0.336 5.336 12 C 0.290 3.710 13 O -0.407 6.407 14 C 0.283 3.717 15 O -0.430 6.430 16 N -0.303 5.303 17 C -0.039 4.039 18 C -0.152 4.152 19 C 0.024 3.976 20 C -0.570 4.570 21 H 0.069 0.931 22 C -0.186 4.186 23 N -0.554 5.554 24 Si 0.778 3.222 25 H -0.194 1.194 26 H -0.206 1.206 27 H -0.208 1.208 28 C -0.151 4.151 29 C -0.010 4.010 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.256 0.744 44 H 0.078 0.922 45 H 0.146 0.854 46 H 0.043 0.957 47 H 0.095 0.905 48 H 0.022 0.978 49 H 0.070 0.930 50 H 0.063 0.937 51 H 0.091 0.909 52 H 0.113 0.887 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.575 -11.585 24.368 27.104 hybrid contribution 0.671 0.665 -1.047 1.410 sum -1.904 -10.920 23.321 25.821 Atomic orbital electron populations 1.22021 0.95041 1.02384 1.01830 1.21031 0.96197 0.99178 0.93582 0.90844 1.21535 1.00664 0.95652 0.97000 1.21578 1.01095 0.95489 0.97694 1.21505 1.00867 0.98938 0.94141 1.21660 1.01302 0.94291 0.98393 1.21378 1.01104 0.95394 0.92597 0.89867 1.21780 0.98722 0.97341 0.82523 1.45801 1.47559 1.35843 1.04420 1.20054 0.82226 0.83498 0.85250 1.90532 1.36441 1.28129 1.85575 1.20255 0.81567 0.84898 0.84976 1.90678 1.39905 1.26232 1.86222 1.48202 1.56733 1.19896 1.05432 1.22915 0.95121 0.81197 1.04622 1.21880 0.97250 1.00108 0.95915 1.18657 0.94603 0.91665 0.92715 1.21578 1.02699 1.00652 1.32117 0.93087 1.25711 0.96235 0.99398 0.97216 1.69984 1.18954 1.19893 1.46526 0.85599 0.79177 0.78793 0.78628 1.19371 1.20631 1.20767 1.21849 0.97801 0.96519 0.98913 1.21853 0.99420 0.95544 0.84170 0.92106 0.93111 0.91722 0.91277 0.91824 0.91615 0.91630 0.91872 0.91709 0.91443 0.92305 0.90742 0.91270 0.74427 0.92220 0.85387 0.95667 0.90523 0.97827 0.92976 0.93673 0.90949 0.88737 0.90306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 8.15 71.98 0.59 -1.18 16 2 C -0.08 -0.90 2.72 -10.80 -0.03 -0.93 16 3 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 4 C -0.11 -1.04 5.45 30.59 0.17 -0.88 16 5 C -0.12 -1.11 5.65 30.59 0.17 -0.94 16 6 C -0.12 -1.21 5.92 30.59 0.18 -1.03 16 7 C -0.12 -1.45 4.80 30.59 0.15 -1.31 16 8 C -0.09 -1.09 2.00 -10.79 -0.02 -1.11 16 9 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 10 C 0.12 2.13 4.56 86.38 0.39 2.52 16 11 N -0.68 -15.23 5.27 -464.40 -2.45 -17.68 16 12 C 0.51 15.47 7.74 87.27 0.68 16.14 16 13 O -0.53 -18.32 13.18 -3.24 -0.04 -18.36 16 14 C 0.50 17.21 7.73 87.27 0.67 17.89 16 15 O -0.55 -19.52 15.93 -3.23 -0.05 -19.58 16 16 N -0.57 -21.25 2.97 -819.63 -2.43 -23.68 16 17 C 0.08 3.34 6.01 86.51 0.52 3.86 16 18 C -0.11 -5.41 5.17 30.82 0.16 -5.25 16 19 C 0.04 2.09 2.06 -11.51 -0.02 2.07 16 20 C -0.53 -29.24 8.56 25.60 0.22 -29.02 16 21 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 22 C 0.01 0.72 5.30 84.65 0.45 1.17 16 23 N -0.91 -52.29 11.30 21.45 0.24 -52.05 16 24 Si 0.95 43.68 29.54 68.60 2.03 45.70 16 25 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 26 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 27 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 28 C -0.11 -4.63 5.30 30.67 0.16 -4.47 16 29 C 0.11 3.98 6.44 86.37 0.56 4.53 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.05 0.67 6.54 -2.39 -0.02 0.65 16 32 H 0.06 0.71 4.81 -2.39 -0.01 0.70 16 33 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 34 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.07 0.61 6.43 -2.39 -0.02 0.60 16 37 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.07 0.86 6.43 -2.39 -0.02 0.84 16 40 H 0.06 0.79 7.18 -2.39 -0.02 0.77 16 41 H 0.07 1.40 6.71 -2.39 -0.02 1.39 16 42 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.42 8.23 7.15 -92.71 -0.66 7.57 16 44 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 45 H 0.13 5.12 4.30 -48.53 -0.21 4.92 16 46 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.08 4.13 6.03 -2.39 -0.01 4.11 16 48 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 49 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 50 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 51 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 52 H 0.09 3.13 7.01 -2.38 -0.02 3.12 16 53 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 Total: -1.00 -62.59 393.85 2.33 -60.26 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: 0.04 Total: 23.31 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: 4.99 Total: 2.07 kcal Atomic # 7 Polarization: -88.77 SS G_CDS: -4.64 Total: -93.41 kcal Atomic # 8 Polarization: -37.84 SS G_CDS: -0.09 Total: -37.93 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -62.59 2.33 -60.26 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327821646.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.223 kcal (2) G-P(sol) polarization free energy of solvation -62.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds