Wall clock time and date at job start Tue Mar 31 2020 20:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47197 * 2 1 4 4 C 1.53007 * 109.47530 * 240.00068 * 2 1 3 5 5 C 1.52992 * 109.47032 * 179.97438 * 4 2 1 6 6 C 1.52994 * 109.47519 * 60.00223 * 5 4 2 7 7 C 1.53000 * 109.47061 * 299.99847 * 6 5 4 8 8 H 1.09001 * 109.47343 * 300.00016 * 7 6 5 9 9 N 1.46496 * 109.47557 * 179.97438 * 7 6 5 10 10 C 1.34781 * 120.00220 * 84.99600 * 9 7 6 11 11 O 1.21348 * 119.99726 * 0.02562 * 10 9 7 12 12 C 1.49445 * 120.00052 * 180.02562 * 10 9 7 13 13 O 1.21352 * 120.00125 * 353.48612 * 12 10 9 14 14 N 1.34782 * 120.00091 * 173.48994 * 12 10 9 15 15 C 1.46929 * 120.62539 * 351.26619 * 14 12 10 16 16 C 1.53192 * 108.76982 * 233.58672 * 15 14 12 17 17 C 1.53042 * 109.31820 * 305.36487 * 16 15 14 18 18 C 1.53043 * 109.53369 * 61.36827 * 17 16 15 19 19 H 1.08995 * 109.49860 * 58.61911 * 18 17 16 20 20 C 1.50698 * 109.49752 * 178.68288 * 18 17 16 21 21 H 1.08000 * 119.99804 * 6.70722 * 20 18 17 22 22 C 1.37874 * 120.00037 * 186.69795 * 20 18 17 23 23 N 1.31519 * 119.99834 * 185.94173 * 22 20 18 24 24 Si 1.86795 * 120.00084 * 5.94816 * 22 20 18 25 25 H 1.48500 * 109.47122 * 269.99546 * 24 22 20 26 26 H 1.48504 * 109.47220 * 149.99576 * 24 22 20 27 27 H 1.48499 * 109.47101 * 29.99407 * 24 22 20 28 28 C 1.46927 * 120.63053 * 171.24692 * 14 12 10 29 29 C 1.52995 * 109.47326 * 59.99588 * 7 6 5 30 30 H 1.09000 * 109.47472 * 179.97438 * 29 7 6 31 31 C 1.53002 * 109.46964 * 60.00271 * 29 7 6 32 32 H 1.09000 * 109.47472 * 299.99684 * 1 2 3 33 33 H 1.08999 * 109.47316 * 60.00124 * 1 2 3 34 34 H 1.09009 * 109.46717 * 179.97438 * 1 2 3 35 35 H 1.09001 * 109.46505 * 299.99783 * 4 2 1 36 36 H 1.08999 * 109.46978 * 59.99600 * 4 2 1 37 37 H 1.09006 * 109.47260 * 179.97438 * 5 4 2 38 38 H 1.09001 * 109.47414 * 299.99368 * 5 4 2 39 39 H 1.09001 * 109.47764 * 179.97438 * 6 5 4 40 40 H 1.09001 * 109.47475 * 59.99182 * 6 5 4 41 41 H 0.97006 * 120.00093 * 265.00149 * 9 7 6 42 42 H 1.09000 * 109.58515 * 113.80316 * 15 14 12 43 43 H 1.08999 * 109.58717 * 353.37381 * 15 14 12 44 44 H 1.09000 * 109.49428 * 185.41376 * 16 15 14 45 45 H 1.09000 * 109.52545 * 65.34207 * 16 15 14 46 46 H 1.08994 * 109.45748 * 301.35185 * 17 16 15 47 47 H 1.08999 * 109.44861 * 181.37971 * 17 16 15 48 48 H 0.96995 * 120.00013 * 354.98097 * 23 22 20 49 49 H 1.08997 * 109.58609 * 6.62583 * 28 14 12 50 50 H 1.09001 * 109.57923 * 246.19648 * 28 14 12 51 51 H 1.08999 * 109.46995 * 59.99936 * 31 29 7 52 52 H 1.09007 * 109.47326 * 180.02562 * 31 29 7 53 53 H 1.08997 * 109.47282 * 300.00111 * 31 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5700 -0.7206 -1.2495 6 6 4.0805 -1.4415 -0.0003 7 6 3.5705 -0.7203 1.2489 8 1 3.9334 0.3075 1.2488 9 7 4.0588 -1.4108 2.4451 10 6 5.2808 -1.1250 2.9367 11 8 5.9763 -0.2953 2.3886 12 6 5.7791 -1.8299 4.1566 13 8 5.0418 -2.5709 4.7729 14 7 7.0474 -1.6425 4.5724 15 6 8.0070 -0.9049 3.7393 16 6 9.2545 -1.7713 3.5399 17 6 9.8018 -2.1927 4.9056 18 6 8.7499 -3.0235 5.6442 19 1 8.4935 -3.8992 5.0479 20 6 9.3015 -3.4653 6.9752 21 1 10.2577 -3.0942 7.3134 22 6 8.5854 -4.3429 7.7612 23 7 9.0087 -4.6377 8.9710 24 14 7.0143 -5.1135 7.1077 25 1 5.8577 -4.2487 7.4539 26 1 6.8297 -6.4547 7.7179 27 1 7.1063 -5.2495 5.6318 28 6 7.4965 -2.1714 5.8675 29 6 2.0405 -0.7208 1.2492 30 1 1.6771 -0.2075 2.1395 31 6 1.5311 -2.1636 1.2495 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0278 -0.0005 35 1 1.6768 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.9335 -1.2348 -2.1393 38 1 3.9330 0.3072 -1.2498 39 1 5.1706 -1.4415 -0.0007 40 1 3.7176 -2.4693 0.0000 41 1 3.5027 -2.0739 2.8834 42 1 8.2834 0.0249 4.2364 43 1 7.5567 -0.6844 2.7714 44 1 10.0128 -1.1995 3.0049 45 1 8.9936 -2.6585 2.9629 46 1 10.0399 -1.3048 5.4911 47 1 10.7036 -2.7890 4.7669 48 1 9.8609 -4.2958 9.2834 49 1 6.7095 -2.7865 6.3037 50 1 7.7313 -1.3448 6.5381 51 1 1.8948 -2.6771 2.1395 52 1 0.4410 -2.1640 1.2493 53 1 1.8944 -2.6774 0.3596 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327894382.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:44 Heat of formation + Delta-G solvation = -106.679457 kcal Electronic energy + Delta-G solvation = -30937.039838 eV Core-core repulsion = 26999.907663 eV Total energy + Delta-G solvation = -3937.132175 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.18768 -40.85183 -39.45824 -38.68114 -35.95084 -35.21070 -33.63939 -33.52173 -32.18282 -31.60938 -28.54983 -27.44884 -26.73127 -26.62179 -24.60242 -23.46396 -22.88180 -22.13846 -21.41863 -20.69858 -19.83565 -19.41502 -18.58951 -18.16292 -17.12512 -17.01395 -16.55655 -16.21446 -15.96671 -15.70886 -15.56271 -15.41598 -15.25512 -15.04104 -14.82937 -14.55427 -14.34920 -14.02958 -13.93734 -13.77149 -13.47803 -13.31144 -13.17026 -12.92992 -12.82796 -12.62007 -12.49558 -12.34039 -12.26378 -12.14203 -12.03542 -11.76362 -11.58206 -11.56189 -11.36000 -11.26031 -11.15781 -11.02046 -10.95759 -10.68447 -10.29633 -10.15362 -9.75112 -8.77098 -6.46587 0.26925 1.24390 1.40858 1.43275 1.60420 2.04356 2.34762 2.44077 3.01563 3.22535 3.60784 3.69689 3.85078 3.95765 4.07930 4.10704 4.13167 4.18392 4.31784 4.38292 4.38699 4.43451 4.47404 4.54258 4.59242 4.70188 4.71959 4.73918 4.81629 4.82058 4.88600 4.96669 5.02104 5.03886 5.05682 5.11360 5.12709 5.15218 5.22960 5.26067 5.30768 5.36244 5.39988 5.44406 5.47276 5.49358 5.55793 5.67696 5.91446 5.99052 6.00648 6.26506 6.52878 6.64562 6.86883 7.30966 8.60363 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019414 B = 0.002935 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.882586 B = 9539.100434 C =10454.448642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 H 0.071 0.929 4 C -0.115 4.115 5 C -0.112 4.112 6 C -0.130 4.130 7 C 0.147 3.853 8 H 0.083 0.917 9 N -0.684 5.684 10 C 0.520 3.480 11 O -0.520 6.520 12 C 0.488 3.512 13 O -0.558 6.558 14 N -0.578 5.578 15 C 0.073 3.927 16 C -0.126 4.126 17 C -0.100 4.100 18 C 0.003 3.997 19 H 0.021 0.979 20 C -0.586 4.586 21 H 0.033 0.967 22 C -0.015 4.015 23 N -0.941 5.941 24 Si 1.082 2.918 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.266 1.266 28 C 0.110 3.890 29 C -0.089 4.089 30 H 0.075 0.925 31 C -0.158 4.158 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.051 0.949 40 H 0.073 0.927 41 H 0.415 0.585 42 H 0.075 0.925 43 H 0.144 0.856 44 H 0.102 0.898 45 H 0.057 0.943 46 H 0.053 0.947 47 H 0.053 0.947 48 H 0.257 0.743 49 H 0.061 0.939 50 H 0.066 0.934 51 H 0.047 0.953 52 H 0.074 0.926 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.800 10.766 -24.941 31.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.099 4.099 3 H 0.089 0.911 4 C -0.152 4.152 5 C -0.150 4.150 6 C -0.168 4.168 7 C 0.044 3.956 8 H 0.101 0.899 9 N -0.337 5.337 10 C 0.301 3.699 11 O -0.398 6.398 12 C 0.271 3.729 13 O -0.437 6.437 14 N -0.309 5.309 15 C -0.047 4.047 16 C -0.164 4.164 17 C -0.137 4.137 18 C -0.016 4.016 19 H 0.039 0.961 20 C -0.624 4.624 21 H 0.051 0.949 22 C -0.214 4.214 23 N -0.577 5.577 24 Si 0.907 3.093 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.191 1.191 28 C -0.012 4.012 29 C -0.108 4.108 30 H 0.093 0.907 31 C -0.215 4.215 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.092 0.908 41 H 0.253 0.747 42 H 0.093 0.907 43 H 0.160 0.840 44 H 0.120 0.880 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.067 0.933 49 H 0.079 0.921 50 H 0.084 0.916 51 H 0.066 0.934 52 H 0.093 0.907 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.943 9.997 -24.591 32.040 hybrid contribution 1.750 0.477 0.956 2.050 sum -16.193 10.474 -23.635 30.504 Atomic orbital electron populations 1.21862 0.94054 1.02458 1.02038 1.21072 0.96317 0.99155 0.93346 0.91067 1.21667 0.94597 1.01415 0.97551 1.21458 0.96251 1.00698 0.96569 1.21944 1.00273 1.00383 0.94231 1.21294 0.94904 0.96597 0.82769 0.89905 1.46041 1.15843 1.42474 1.29299 1.19801 0.83285 0.82884 0.83905 1.90460 1.54681 1.33960 1.60692 1.20630 0.83016 0.82731 0.86477 1.90724 1.56699 1.37886 1.58432 1.48400 1.09723 1.52682 1.20128 1.22964 0.89457 0.93950 0.98328 1.21960 0.97522 1.00089 0.96866 1.21414 0.97765 0.98938 0.95619 1.19419 0.92549 0.94320 0.95349 0.96066 1.22231 1.06461 1.28711 1.05034 0.94908 1.26857 1.05577 0.95216 0.93710 1.70904 1.21618 1.47777 1.17438 0.83449 0.73179 0.76477 0.76200 1.19927 1.21041 1.19143 1.22259 0.97879 0.97991 0.83054 1.21379 0.91628 0.98096 0.99704 0.90693 1.22061 1.02303 0.95068 1.02074 0.92791 0.91900 0.91863 0.91063 0.90753 0.90849 0.91855 0.93043 0.90850 0.74682 0.90701 0.83950 0.87996 0.92386 0.92848 0.92839 0.93345 0.92078 0.91562 0.93442 0.90703 0.91154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 8.84 71.98 0.64 -0.56 16 2 C -0.08 -0.79 2.49 -10.79 -0.03 -0.81 16 3 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 4 C -0.12 -1.03 4.93 30.59 0.15 -0.88 16 5 C -0.11 -1.28 5.92 30.59 0.18 -1.10 16 6 C -0.13 -2.03 5.22 30.59 0.16 -1.87 16 7 C 0.15 2.52 2.15 44.99 0.10 2.62 16 8 H 0.08 1.61 7.58 -2.39 -0.02 1.59 16 9 N -0.68 -15.29 4.99 -443.88 -2.21 -17.50 16 10 C 0.52 15.02 7.71 87.27 0.67 15.69 16 11 O -0.52 -15.29 12.84 -3.24 -0.04 -15.33 16 12 C 0.49 17.80 7.73 87.27 0.67 18.48 16 13 O -0.56 -23.19 15.93 -3.25 -0.05 -23.24 16 14 N -0.58 -21.85 2.97 -820.47 -2.44 -24.29 16 15 C 0.07 2.26 5.98 86.36 0.52 2.78 16 16 C -0.13 -3.83 6.08 30.67 0.19 -3.65 16 17 C -0.10 -3.87 5.11 30.62 0.16 -3.71 16 18 C 0.00 0.16 1.82 -11.46 -0.02 0.14 16 19 H 0.02 1.06 6.53 -2.39 -0.02 1.05 16 20 C -0.59 -33.47 8.90 25.60 0.23 -33.24 16 21 H 0.03 2.01 7.98 -2.91 -0.02 1.98 16 22 C -0.01 -0.87 5.43 84.65 0.46 -0.41 16 23 N -0.94 -59.90 13.70 21.45 0.29 -59.61 16 24 Si 1.08 55.31 25.42 68.60 1.74 57.05 16 25 H -0.27 -13.75 6.82 99.48 0.68 -13.07 16 26 H -0.28 -14.19 7.11 99.48 0.71 -13.48 16 27 H -0.27 -12.93 6.33 99.48 0.63 -12.30 16 28 C 0.11 4.97 5.33 86.36 0.46 5.43 16 29 C -0.09 -1.13 2.41 -10.79 -0.03 -1.16 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 31 C -0.16 -1.85 7.98 71.98 0.57 -1.27 16 32 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.06 0.48 6.43 -2.38 -0.02 0.47 16 35 H 0.07 0.61 6.43 -2.39 -0.02 0.60 16 36 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 38 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.07 1.10 6.43 -2.39 -0.02 1.08 16 41 H 0.41 8.94 6.35 -92.70 -0.59 8.35 16 42 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.14 4.13 4.32 -47.59 -0.21 3.93 16 44 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 45 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 48 H 0.26 16.37 8.72 -92.71 -0.81 15.56 16 49 H 0.06 3.03 3.55 -2.39 -0.01 3.02 16 50 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 51 H 0.05 0.64 6.50 -2.39 -0.02 0.63 16 52 H 0.07 0.72 6.43 -2.38 -0.02 0.71 16 53 H 0.07 0.77 4.81 -2.39 -0.01 0.76 16 Total: -1.00 -69.00 386.18 2.36 -66.64 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -0.01 Total: 19.81 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: 5.08 Total: -3.53 kcal Atomic # 7 Polarization: -97.04 SS G_CDS: -4.36 Total: -101.40 kcal Atomic # 8 Polarization: -38.48 SS G_CDS: -0.09 Total: -38.57 kcal Atomic # 14 Polarization: 55.31 SS G_CDS: 1.74 Total: 57.05 kcal Total: -69.00 2.36 -66.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327894382.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.035 kcal (2) G-P(sol) polarization free energy of solvation -69.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds