Wall clock time and date at job start Tue Mar 31 2020 20:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08991 * 109.47817 * 2 1 4 4 C 1.53003 * 109.46736 * 239.99561 * 2 1 3 5 5 C 1.53007 * 109.47129 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.46979 * 59.99976 * 5 4 2 7 7 C 1.53004 * 109.47608 * 300.00516 * 6 5 4 8 8 H 1.09003 * 109.46701 * 299.99797 * 7 6 5 9 9 N 1.46494 * 109.47335 * 180.02562 * 7 6 5 10 10 C 1.34775 * 120.00375 * 84.99656 * 9 7 6 11 11 O 1.21355 * 119.99730 * 0.02562 * 10 9 7 12 12 C 1.49446 * 120.00158 * 179.97438 * 10 9 7 13 13 O 1.21348 * 120.00431 * 353.07144 * 12 10 9 14 14 N 1.34774 * 120.00042 * 173.07147 * 12 10 9 15 15 C 1.46927 * 120.63005 * 1.67288 * 14 12 10 16 16 C 1.52765 * 109.01134 * 233.58568 * 15 14 12 17 17 C 1.53044 * 109.38195 * 305.58784 * 16 15 14 18 18 C 1.53042 * 109.53751 * 61.23960 * 17 16 15 19 19 H 1.09007 * 109.49802 * 58.58210 * 18 17 16 20 20 C 1.50695 * 109.52753 * 178.66751 * 18 17 16 21 21 H 1.08007 * 119.99591 * 359.85258 * 20 18 17 22 22 C 1.37877 * 120.00610 * 179.85357 * 20 18 17 23 23 N 1.31515 * 119.99662 * 0.02562 * 22 20 18 24 24 Si 1.86797 * 120.00475 * 179.97438 * 22 20 18 25 25 H 1.48508 * 109.46826 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47211 * 119.99944 * 24 22 20 27 27 H 1.48494 * 109.47264 * 240.00287 * 24 22 20 28 28 C 1.46924 * 120.63269 * 181.95881 * 14 12 10 29 29 C 1.52997 * 109.47294 * 59.99621 * 7 6 5 30 30 H 1.09000 * 109.47345 * 59.99957 * 29 7 6 31 31 C 1.52995 * 109.47167 * 180.02562 * 29 7 6 32 32 H 1.09003 * 109.47173 * 300.00111 * 1 2 3 33 33 H 1.08998 * 109.47251 * 59.99914 * 1 2 3 34 34 H 1.08994 * 109.47575 * 180.02562 * 1 2 3 35 35 H 1.08998 * 109.47107 * 60.00731 * 4 2 1 36 36 H 1.08998 * 109.47707 * 299.99962 * 4 2 1 37 37 H 1.08996 * 109.46944 * 300.00930 * 5 4 2 38 38 H 1.08998 * 109.47135 * 180.02562 * 5 4 2 39 39 H 1.09003 * 109.46924 * 60.00177 * 6 5 4 40 40 H 1.08995 * 109.47602 * 180.02562 * 6 5 4 41 41 H 0.97007 * 119.99728 * 264.99384 * 9 7 6 42 42 H 1.08994 * 109.58620 * 353.42270 * 15 14 12 43 43 H 1.09006 * 109.58714 * 113.84522 * 15 14 12 44 44 H 1.09001 * 109.56510 * 185.55887 * 16 15 14 45 45 H 1.08997 * 109.38417 * 65.50976 * 16 15 14 46 46 H 1.09002 * 109.46051 * 301.22385 * 17 16 15 47 47 H 1.08999 * 109.44989 * 181.25206 * 17 16 15 48 48 H 0.96998 * 120.00121 * 180.02562 * 23 22 20 49 49 H 1.09009 * 109.58398 * 246.15505 * 28 14 12 50 50 H 1.09006 * 109.58862 * 6.57558 * 28 14 12 51 51 H 1.08998 * 109.47472 * 60.00327 * 31 29 7 52 52 H 1.09004 * 109.46928 * 179.97438 * 31 29 7 53 53 H 1.08998 * 109.47225 * 299.99630 * 31 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5700 -0.7220 -1.2490 6 6 4.0794 -1.4435 0.0003 7 6 3.5695 -0.7223 1.2496 8 1 3.9332 0.3052 1.2498 9 7 4.0578 -1.4128 2.4457 10 6 5.2798 -1.1271 2.9372 11 8 5.9754 -0.2974 2.3891 12 6 5.7777 -1.8312 4.1577 13 8 5.0379 -2.5656 4.7789 14 7 7.0485 -1.6505 4.5687 15 6 7.9453 -0.7363 3.8485 16 6 9.2238 -1.4846 3.4753 17 6 9.8356 -2.1039 4.7340 18 6 8.8496 -3.1028 5.3441 19 1 8.6150 -3.8757 4.6120 20 6 9.4652 -3.7365 6.5649 21 1 10.4616 -3.4570 6.8741 22 6 8.7566 -4.6731 7.2871 23 7 7.5435 -5.0138 6.9103 24 14 9.5199 -5.4591 8.8000 25 1 10.8834 -4.9089 9.0091 26 1 8.6799 -5.1639 9.9885 27 1 9.6033 -6.9289 8.6055 28 6 7.5653 -2.3686 5.7417 29 6 2.0395 -0.7217 1.2493 30 1 1.6757 -1.7492 1.2490 31 6 1.5296 0.0001 2.4982 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 -0.3634 -1.0276 0.0005 35 1 1.6766 -0.2075 -2.1392 36 1 1.6766 -1.7490 -1.2492 37 1 3.9337 0.3055 -1.2487 38 1 3.9332 -1.2355 -2.1392 39 1 3.7157 -2.4711 0.0001 40 1 5.1694 -1.4436 0.0008 41 1 3.5016 -2.0758 2.8840 42 1 7.4541 -0.3807 2.9428 43 1 8.1944 0.1106 4.4880 44 1 9.9357 -0.7906 3.0284 45 1 8.9862 -2.2727 2.7608 46 1 10.0505 -1.3177 5.4579 47 1 10.7597 -2.6194 4.4725 48 1 7.0448 -5.6725 7.4186 49 1 7.7827 -1.6576 6.5388 50 1 6.8233 -3.0897 6.0848 51 1 1.8932 1.0276 2.4981 52 1 0.4395 0.0009 2.4978 53 1 1.8925 -0.5137 3.3884 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327894383.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:48 Heat of formation + Delta-G solvation = -104.477337 kcal Electronic energy + Delta-G solvation = -30757.331690 eV Core-core repulsion = 26820.295005 eV Total energy + Delta-G solvation = -3937.036684 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.08788 -40.59862 -39.28340 -38.53700 -35.89663 -35.08411 -33.99619 -33.47120 -31.69442 -31.59496 -28.33262 -27.49587 -26.86067 -26.39200 -24.48230 -23.52507 -22.30454 -22.06103 -21.59738 -20.88632 -20.23734 -18.84476 -18.20787 -17.91125 -16.98742 -16.95087 -16.46257 -16.26841 -15.71700 -15.54171 -15.51062 -15.31800 -15.11318 -14.87211 -14.74711 -14.59275 -14.43059 -13.91256 -13.76524 -13.58493 -13.45195 -13.08865 -12.97613 -12.90830 -12.75143 -12.62832 -12.46205 -12.44080 -12.31369 -12.16235 -12.01133 -11.76480 -11.72827 -11.61556 -11.34198 -11.23191 -11.13430 -11.06142 -10.98816 -10.56416 -10.21972 -9.95817 -9.56274 -8.12988 -6.29579 0.36577 1.33829 1.41243 1.41880 1.53594 2.16158 2.40461 2.57121 3.15152 3.29633 3.57062 3.73055 3.84845 4.07341 4.13682 4.17321 4.18270 4.31219 4.38008 4.43261 4.48135 4.50617 4.57674 4.68185 4.70211 4.72866 4.80459 4.81828 4.85665 4.98181 4.99577 5.04464 5.09631 5.11079 5.14504 5.18053 5.22029 5.23481 5.27713 5.30080 5.36513 5.37844 5.42032 5.52926 5.55403 5.58036 5.63170 5.82915 5.92859 6.02309 6.29036 6.44510 6.75392 6.83228 6.99187 7.40277 8.91129 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.020504 B = 0.002636 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.261878 B =10618.669324 C =11333.703107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.079 4.079 3 H 0.073 0.927 4 C -0.113 4.113 5 C -0.111 4.111 6 C -0.130 4.130 7 C 0.148 3.852 8 H 0.084 0.916 9 N -0.681 5.681 10 C 0.523 3.477 11 O -0.519 6.519 12 C 0.483 3.517 13 O -0.560 6.560 14 N -0.573 5.573 15 C 0.049 3.951 16 C -0.123 4.123 17 C -0.107 4.107 18 C 0.039 3.961 19 H -0.011 1.011 20 C -0.535 4.535 21 H 0.062 0.938 22 C 0.010 3.990 23 N -0.914 5.914 24 Si 0.960 3.040 25 H -0.262 1.262 26 H -0.281 1.281 27 H -0.282 1.282 28 C 0.120 3.880 29 C -0.087 4.087 30 H 0.082 0.918 31 C -0.151 4.151 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.050 0.950 41 H 0.414 0.586 42 H 0.158 0.842 43 H 0.070 0.930 44 H 0.099 0.901 45 H 0.046 0.954 46 H 0.056 0.944 47 H 0.054 0.946 48 H 0.261 0.739 49 H 0.043 0.957 50 H 0.085 0.915 51 H 0.054 0.946 52 H 0.075 0.925 53 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.928 12.253 -17.246 24.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.098 4.098 3 H 0.091 0.909 4 C -0.151 4.151 5 C -0.149 4.149 6 C -0.169 4.169 7 C 0.045 3.955 8 H 0.102 0.898 9 N -0.332 5.332 10 C 0.305 3.695 11 O -0.398 6.398 12 C 0.266 3.734 13 O -0.440 6.440 14 N -0.304 5.304 15 C -0.072 4.072 16 C -0.161 4.161 17 C -0.145 4.145 18 C 0.020 3.980 19 H 0.007 0.993 20 C -0.573 4.573 21 H 0.081 0.919 22 C -0.189 4.189 23 N -0.553 5.553 24 Si 0.785 3.215 25 H -0.186 1.186 26 H -0.207 1.207 27 H -0.208 1.208 28 C -0.002 4.002 29 C -0.106 4.106 30 H 0.100 0.900 31 C -0.209 4.209 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.069 0.931 41 H 0.251 0.749 42 H 0.174 0.826 43 H 0.088 0.912 44 H 0.117 0.883 45 H 0.065 0.935 46 H 0.075 0.925 47 H 0.072 0.928 48 H 0.070 0.930 49 H 0.061 0.939 50 H 0.104 0.896 51 H 0.073 0.927 52 H 0.094 0.906 53 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -12.968 12.354 -17.256 24.871 hybrid contribution 0.342 -1.286 1.573 2.060 sum -12.626 11.069 -15.682 22.975 Atomic orbital electron populations 1.21861 0.93945 1.02223 1.02339 1.21094 0.96399 0.99391 0.92891 0.90853 1.21636 0.94507 1.01133 0.97790 1.21463 0.96319 1.00738 0.96422 1.21930 1.00324 1.00073 0.94539 1.21344 0.94924 0.96664 0.82569 0.89766 1.45936 1.15630 1.42316 1.29314 1.19910 0.83059 0.82557 0.84008 1.90242 1.53974 1.34528 1.61054 1.20537 0.83393 0.83112 0.86376 1.90731 1.56179 1.39215 1.57836 1.48484 1.10234 1.42361 1.29347 1.23295 0.91645 0.91222 1.00994 1.21807 0.97058 0.99856 0.97390 1.21563 0.98188 0.98129 0.96598 1.18905 0.91585 0.92629 0.94879 0.99257 1.21508 1.01563 1.22802 1.11429 0.91949 1.25890 0.95278 0.97020 1.00707 1.70061 1.11809 1.32752 1.40668 0.85477 0.78853 0.78054 0.79113 1.18631 1.20708 1.20752 1.21955 0.99176 0.94278 0.84760 1.21426 0.91491 1.01275 0.96428 0.90001 1.21911 1.02123 1.00279 0.96539 0.92146 0.91780 0.92499 0.90434 0.91618 0.91642 0.90875 0.91443 0.93136 0.74858 0.82602 0.91209 0.88276 0.93478 0.92504 0.92761 0.92957 0.93896 0.89640 0.92728 0.90568 0.93806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.84 71.98 0.64 -0.74 16 2 C -0.08 -0.90 2.25 -10.79 -0.02 -0.92 16 3 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 4 C -0.11 -1.22 5.20 30.60 0.16 -1.06 16 5 C -0.11 -1.51 5.92 30.60 0.18 -1.33 16 6 C -0.13 -2.42 5.49 30.60 0.17 -2.25 16 7 C 0.15 2.91 1.90 44.99 0.09 3.00 16 8 H 0.08 1.83 7.58 -2.39 -0.02 1.81 16 9 N -0.68 -17.50 4.38 -443.87 -1.94 -19.45 16 10 C 0.52 17.19 7.77 87.27 0.68 17.87 16 11 O -0.52 -17.04 12.68 -3.26 -0.04 -17.08 16 12 C 0.48 20.25 7.76 87.27 0.68 20.93 16 13 O -0.56 -26.94 15.91 -3.24 -0.05 -26.99 16 14 N -0.57 -24.74 2.98 -821.29 -2.45 -27.18 16 15 C 0.05 1.71 6.20 86.22 0.53 2.24 16 16 C -0.12 -4.23 6.07 30.53 0.19 -4.04 16 17 C -0.11 -4.41 5.11 30.62 0.16 -4.25 16 18 C 0.04 2.03 2.25 -11.46 -0.03 2.00 16 19 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 20 C -0.53 -29.72 8.57 25.60 0.22 -29.50 16 21 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 22 C 0.01 0.59 5.30 84.65 0.45 1.04 16 23 N -0.91 -54.96 11.39 21.45 0.24 -54.72 16 24 Si 0.96 44.24 29.54 68.60 2.03 46.27 16 25 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 26 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 27 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 28 C 0.12 6.13 5.40 86.36 0.47 6.60 16 29 C -0.09 -1.29 1.83 -10.79 -0.02 -1.31 16 30 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 31 C -0.15 -2.36 8.68 71.98 0.62 -1.74 16 32 H 0.06 0.57 6.43 -2.39 -0.02 0.55 16 33 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.41 10.47 7.88 -92.70 -0.73 9.74 16 42 H 0.16 5.24 3.79 -82.24 -0.31 4.93 16 43 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 44 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 45 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 47 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 48 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 49 H 0.04 2.17 8.14 -2.38 -0.02 2.16 16 50 H 0.09 5.07 5.13 -2.38 -0.01 5.06 16 51 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 52 H 0.08 0.96 6.43 -2.38 -0.02 0.95 16 53 H 0.04 0.83 7.45 -2.39 -0.02 0.81 16 Total: -1.00 -67.17 400.02 2.80 -64.37 By element: Atomic # 1 Polarization: 28.37 SS G_CDS: -0.14 Total: 28.23 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: 5.15 Total: 6.55 kcal Atomic # 7 Polarization: -97.20 SS G_CDS: -4.14 Total: -101.35 kcal Atomic # 8 Polarization: -43.97 SS G_CDS: -0.09 Total: -44.07 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -67.17 2.80 -64.37 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327894383.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.103 kcal (2) G-P(sol) polarization free energy of solvation -67.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds