Wall clock time and date at job start Tue Mar 31 2020 20:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46647 * 2 1 4 4 C 1.52991 * 109.46949 * 240.00184 * 2 1 3 5 5 C 1.52996 * 109.47377 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.47137 * 59.99593 * 5 4 2 7 7 C 1.53002 * 109.47393 * 300.00791 * 6 5 4 8 8 H 1.09004 * 109.46611 * 299.99456 * 7 6 5 9 9 N 1.46499 * 109.46899 * 179.97438 * 7 6 5 10 10 C 1.34776 * 120.00115 * 84.99945 * 9 7 6 11 11 O 1.21352 * 120.00277 * 359.97438 * 10 9 7 12 12 C 1.49449 * 120.00104 * 179.97438 * 10 9 7 13 13 O 1.21344 * 120.00069 * 353.59738 * 12 10 9 14 14 N 1.34772 * 120.00050 * 173.58756 * 12 10 9 15 15 C 1.46928 * 120.63194 * 352.93086 * 14 12 10 16 16 C 1.53193 * 108.77772 * 126.40933 * 15 14 12 17 17 C 1.53046 * 109.30889 * 54.63478 * 16 15 14 18 18 C 1.53036 * 109.52819 * 298.64194 * 17 16 15 19 19 H 1.08999 * 109.50122 * 301.40817 * 18 17 16 20 20 C 1.50703 * 109.49808 * 181.31099 * 18 17 16 21 21 H 1.08003 * 119.99590 * 0.02562 * 20 18 17 22 22 C 1.37873 * 119.99908 * 179.97438 * 20 18 17 23 23 N 1.31511 * 120.00337 * 0.02562 * 22 20 18 24 24 Si 1.86802 * 119.99658 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47412 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46826 * 120.00367 * 24 22 20 27 27 H 1.48497 * 109.47241 * 240.00357 * 24 22 20 28 28 C 1.46928 * 120.62966 * 172.94950 * 14 12 10 29 29 C 1.52992 * 109.47017 * 59.99341 * 7 6 5 30 30 H 1.09003 * 109.47132 * 180.02562 * 29 7 6 31 31 C 1.52999 * 109.47437 * 60.00594 * 29 7 6 32 32 H 1.09003 * 109.47311 * 299.99722 * 1 2 3 33 33 H 1.09000 * 109.47345 * 59.99673 * 1 2 3 34 34 H 1.09004 * 109.47143 * 180.02562 * 1 2 3 35 35 H 1.08999 * 109.47623 * 299.99654 * 4 2 1 36 36 H 1.09001 * 109.47689 * 59.99691 * 4 2 1 37 37 H 1.09003 * 109.47739 * 180.02562 * 5 4 2 38 38 H 1.09004 * 109.47169 * 299.99952 * 5 4 2 39 39 H 1.08994 * 109.47396 * 179.97438 * 6 5 4 40 40 H 1.09006 * 109.46929 * 60.00658 * 6 5 4 41 41 H 0.97001 * 119.99602 * 264.99002 * 9 7 6 42 42 H 1.09006 * 109.58680 * 6.62689 * 15 14 12 43 43 H 1.08994 * 109.59169 * 246.19633 * 15 14 12 44 44 H 1.08999 * 109.49573 * 294.68683 * 16 15 14 45 45 H 1.08997 * 109.49931 * 174.58963 * 16 15 14 46 46 H 1.08990 * 109.46243 * 58.66217 * 17 16 15 47 47 H 1.09003 * 109.45302 * 178.63235 * 17 16 15 48 48 H 0.97001 * 120.00140 * 179.97438 * 23 22 20 49 49 H 1.08996 * 109.58909 * 353.37568 * 28 14 12 50 50 H 1.09004 * 109.58439 * 113.80787 * 28 14 12 51 51 H 1.09000 * 109.47362 * 59.99404 * 31 29 7 52 52 H 1.09000 * 109.47326 * 179.97438 * 31 29 7 53 53 H 1.09003 * 109.46595 * 299.99882 * 31 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 3.5699 -0.7207 -1.2496 6 6 4.0805 -1.4415 -0.0004 7 6 3.5705 -0.7204 1.2489 8 1 3.9335 0.3075 1.2487 9 7 4.0589 -1.4110 2.4450 10 6 5.2809 -1.1252 2.9365 11 8 5.9768 -0.2960 2.3880 12 6 5.7789 -1.8293 4.1570 13 8 5.0420 -2.5713 4.7725 14 7 7.0465 -1.6404 4.5738 15 6 7.9960 -0.8708 3.7583 16 6 8.6009 0.2401 4.6225 17 6 9.2107 -0.3755 5.8840 18 6 8.1158 -1.0748 6.6927 19 1 7.3405 -0.3547 6.9542 20 6 8.7111 -1.6530 7.9506 21 1 9.7651 -1.5334 8.1537 22 6 7.9100 -2.3336 8.8428 23 7 6.6264 -2.4787 8.5958 24 14 8.6481 -3.0509 10.4017 25 1 10.1022 -2.7527 10.4436 26 1 7.9853 -2.4479 11.5860 27 1 8.4434 -4.5216 10.4151 28 6 7.5055 -2.2005 5.8523 29 6 2.0405 -0.7209 1.2492 30 1 1.6772 -0.2067 2.1390 31 6 1.5310 -2.1635 1.2495 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3633 -1.0277 0.0005 35 1 1.6767 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.9333 -1.2341 -2.1399 38 1 3.9329 0.3071 -1.2499 39 1 5.1704 -1.4416 -0.0009 40 1 3.7175 -2.4694 -0.0002 41 1 3.5027 -2.0740 2.8833 42 1 7.4743 -0.4297 2.9088 43 1 8.7884 -1.5286 3.4016 44 1 7.8210 0.9478 4.9034 45 1 9.3768 0.7579 4.0586 46 1 9.9734 -1.1012 5.6018 47 1 9.6633 0.4102 6.4890 48 1 6.0629 -2.9579 9.2233 49 1 6.6603 -2.6368 6.3845 50 1 8.2580 -2.9668 5.6663 51 1 1.8947 -2.6772 2.1394 52 1 0.4410 -2.1639 1.2502 53 1 1.8943 -2.6773 0.3595 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327894384.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:52 Heat of formation + Delta-G solvation = -100.476439 kcal Electronic energy + Delta-G solvation = -30786.571175 eV Core-core repulsion = 26849.707983 eV Total energy + Delta-G solvation = -3936.863192 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.12133 -40.76822 -39.37508 -38.54346 -35.91223 -35.08918 -33.52711 -33.46133 -31.60759 -31.57844 -28.53633 -27.51114 -26.86080 -26.57888 -24.56745 -23.53104 -22.87841 -22.20800 -21.46558 -20.59043 -19.43498 -18.83618 -18.23574 -17.91206 -17.05733 -16.80616 -16.55878 -16.50975 -16.15218 -15.58997 -15.51609 -15.42767 -15.01126 -14.82992 -14.60627 -14.47269 -14.40305 -13.97063 -13.80888 -13.50275 -13.45518 -13.21966 -13.04043 -12.91326 -12.79169 -12.50806 -12.45493 -12.34120 -12.31242 -12.18899 -12.12631 -11.73212 -11.65276 -11.56059 -11.26882 -11.16392 -11.13903 -11.02598 -10.98442 -10.56840 -10.23126 -9.98735 -9.55934 -8.13455 -6.29910 0.34280 1.34319 1.41201 1.41904 1.53671 2.14361 2.40333 2.56766 3.14876 3.29824 3.61227 3.70062 3.85309 4.11163 4.14425 4.17759 4.18965 4.30299 4.34797 4.39304 4.44775 4.54088 4.57491 4.70261 4.72457 4.74539 4.79855 4.80464 4.82548 4.96917 5.03148 5.04511 5.05730 5.12024 5.14117 5.17441 5.22572 5.24387 5.28102 5.32315 5.38006 5.40767 5.45331 5.49168 5.55099 5.57797 5.68056 5.82735 5.92482 6.01589 6.28642 6.43836 6.74336 6.82839 6.97791 7.40011 8.90908 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.020969 B = 0.002627 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.992938 B =10656.945585 C =11525.209741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 H 0.070 0.930 4 C -0.114 4.114 5 C -0.112 4.112 6 C -0.128 4.128 7 C 0.146 3.854 8 H 0.080 0.920 9 N -0.683 5.683 10 C 0.521 3.479 11 O -0.519 6.519 12 C 0.484 3.516 13 O -0.560 6.560 14 N -0.574 5.574 15 C 0.049 3.951 16 C -0.120 4.120 17 C -0.107 4.107 18 C 0.039 3.961 19 H -0.012 1.012 20 C -0.534 4.534 21 H 0.063 0.937 22 C 0.010 3.990 23 N -0.915 5.915 24 Si 0.960 3.040 25 H -0.262 1.262 26 H -0.282 1.282 27 H -0.281 1.281 28 C 0.121 3.879 29 C -0.090 4.090 30 H 0.071 0.929 31 C -0.157 4.157 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.051 0.949 40 H 0.074 0.926 41 H 0.414 0.586 42 H 0.156 0.844 43 H 0.070 0.930 44 H 0.045 0.955 45 H 0.098 0.902 46 H 0.057 0.943 47 H 0.053 0.947 48 H 0.261 0.739 49 H 0.084 0.916 50 H 0.044 0.956 51 H 0.045 0.955 52 H 0.075 0.925 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.108 3.873 -22.707 25.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.099 4.099 3 H 0.088 0.912 4 C -0.151 4.151 5 C -0.150 4.150 6 C -0.167 4.167 7 C 0.043 3.957 8 H 0.098 0.902 9 N -0.335 5.335 10 C 0.303 3.697 11 O -0.398 6.398 12 C 0.267 3.733 13 O -0.439 6.439 14 N -0.305 5.305 15 C -0.071 4.071 16 C -0.158 4.158 17 C -0.145 4.145 18 C 0.019 3.981 19 H 0.007 0.993 20 C -0.572 4.572 21 H 0.081 0.919 22 C -0.189 4.189 23 N -0.554 5.554 24 Si 0.786 3.214 25 H -0.186 1.186 26 H -0.208 1.208 27 H -0.207 1.207 28 C 0.000 4.000 29 C -0.109 4.109 30 H 0.089 0.911 31 C -0.214 4.214 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.093 0.907 41 H 0.252 0.748 42 H 0.172 0.828 43 H 0.089 0.911 44 H 0.064 0.936 45 H 0.116 0.884 46 H 0.076 0.924 47 H 0.072 0.928 48 H 0.070 0.930 49 H 0.102 0.898 50 H 0.062 0.938 51 H 0.064 0.936 52 H 0.093 0.907 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.155 3.993 -22.700 25.186 hybrid contribution 0.166 -0.825 1.850 2.033 sum -9.989 3.168 -20.849 23.335 Atomic orbital electron populations 1.21861 0.94012 1.02496 1.02016 1.21072 0.96360 0.99120 0.93355 0.91182 1.21661 0.94591 1.01444 0.97437 1.21463 0.96258 1.00691 0.96547 1.21935 1.00279 1.00383 0.94075 1.21314 0.94929 0.96579 0.82899 0.90151 1.46042 1.15790 1.42397 1.29279 1.19963 0.83250 0.82649 0.83874 1.90262 1.54421 1.34441 1.60651 1.20530 0.83237 0.83086 0.86470 1.90720 1.56444 1.38461 1.58324 1.48468 1.09883 1.50674 1.21510 1.23325 0.93411 0.93832 0.96535 1.21821 1.00240 0.97284 0.96460 1.21563 0.97862 0.99139 0.95888 1.18911 0.93489 0.92690 0.92974 0.99350 1.21510 0.95429 1.35400 1.04904 0.91890 1.25896 0.95126 0.96456 1.01445 1.70059 1.05641 1.42264 1.37433 0.85469 0.78953 0.77908 0.79114 1.18594 1.20791 1.20672 1.21945 0.99815 0.97086 0.81169 1.21382 0.91657 0.98196 0.99677 0.91088 1.22051 1.02293 0.94967 1.02072 0.92974 0.91751 0.91775 0.90942 0.90618 0.90614 0.91941 0.93017 0.90725 0.74776 0.82788 0.91137 0.93621 0.88362 0.92395 0.92778 0.92953 0.89785 0.93784 0.93638 0.90662 0.90904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.84 71.98 0.64 -0.82 16 2 C -0.08 -0.95 2.49 -10.80 -0.03 -0.98 16 3 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 4 C -0.11 -1.17 4.93 30.59 0.15 -1.02 16 5 C -0.11 -1.42 5.92 30.59 0.18 -1.24 16 6 C -0.13 -2.23 5.22 30.60 0.16 -2.07 16 7 C 0.15 2.91 2.15 44.99 0.10 3.01 16 8 H 0.08 1.82 7.58 -2.39 -0.02 1.80 16 9 N -0.68 -17.82 4.99 -443.87 -2.21 -20.03 16 10 C 0.52 17.39 7.74 87.27 0.68 18.07 16 11 O -0.52 -17.40 12.76 -3.25 -0.04 -17.44 16 12 C 0.48 20.42 7.74 87.27 0.68 21.09 16 13 O -0.56 -26.97 15.94 -3.23 -0.05 -27.03 16 14 N -0.57 -24.84 2.97 -820.54 -2.44 -27.28 16 15 C 0.05 1.73 6.27 86.36 0.54 2.27 16 16 C -0.12 -4.18 6.08 30.67 0.19 -3.99 16 17 C -0.11 -4.41 5.11 30.62 0.16 -4.26 16 18 C 0.04 2.00 2.25 -11.47 -0.03 1.98 16 19 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 20 C -0.53 -29.72 8.56 25.60 0.22 -29.50 16 21 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 22 C 0.01 0.57 5.30 84.65 0.45 1.02 16 23 N -0.92 -55.15 11.40 21.45 0.24 -54.90 16 24 Si 0.96 44.28 29.54 68.60 2.03 46.30 16 25 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 26 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 27 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 28 C 0.12 6.21 5.38 86.35 0.46 6.68 16 29 C -0.09 -1.39 2.41 -10.80 -0.03 -1.41 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 C -0.16 -2.17 7.97 71.98 0.57 -1.60 16 32 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.06 0.59 6.43 -2.39 -0.02 0.57 16 35 H 0.07 0.70 6.43 -2.39 -0.02 0.68 16 36 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.08 0.83 8.14 -2.39 -0.02 0.82 16 38 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.07 1.22 6.43 -2.38 -0.02 1.20 16 41 H 0.41 10.58 6.35 -92.71 -0.59 10.00 16 42 H 0.16 5.19 3.78 -78.87 -0.30 4.89 16 43 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 46 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 47 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 48 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 49 H 0.08 4.99 5.18 -2.39 -0.01 4.98 16 50 H 0.04 2.22 8.14 -2.39 -0.02 2.20 16 51 H 0.04 0.73 6.50 -2.39 -0.02 0.72 16 52 H 0.07 0.87 6.43 -2.39 -0.02 0.86 16 53 H 0.07 0.90 4.81 -2.39 -0.01 0.89 16 Total: -1.00 -67.57 391.41 2.64 -64.93 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: 0.03 Total: 28.22 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 5.09 Total: 7.23 kcal Atomic # 7 Polarization: -97.81 SS G_CDS: -4.41 Total: -102.22 kcal Atomic # 8 Polarization: -44.37 SS G_CDS: -0.09 Total: -44.46 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -67.57 2.64 -64.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327894384.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.551 kcal (2) G-P(sol) polarization free energy of solvation -67.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds