Wall clock time and date at job start Tue Mar 31 2020 20:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46975 * 2 1 4 4 C 1.52994 * 109.47072 * 239.99828 * 2 1 3 5 5 C 1.53007 * 109.47072 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.46664 * 60.00055 * 5 4 2 7 7 C 1.52994 * 109.47331 * 299.99786 * 6 5 4 8 8 H 1.08997 * 109.47361 * 300.00527 * 7 6 5 9 9 C 1.53001 * 109.47331 * 179.97438 * 7 6 5 10 10 N 1.46506 * 109.46875 * 65.00068 * 9 7 6 11 11 C 1.34780 * 120.00032 * 179.72446 * 10 9 7 12 12 O 1.21348 * 119.99676 * 0.27487 * 11 10 9 13 13 C 1.49449 * 120.00143 * 180.27958 * 11 10 9 14 14 O 1.21352 * 119.99952 * 6.74314 * 13 11 10 15 15 N 1.34767 * 120.00234 * 186.74888 * 13 11 10 16 16 C 1.46930 * 120.62894 * 8.41908 * 15 13 11 17 17 C 1.53625 * 108.54244 * 126.37590 * 16 15 13 18 18 C 1.53033 * 109.24583 * 54.85338 * 17 16 15 19 19 C 1.53048 * 109.53922 * 298.51693 * 18 17 16 20 20 H 1.09004 * 109.51537 * 301.39414 * 19 18 17 21 21 C 1.50701 * 109.49725 * 181.31710 * 19 18 17 22 22 H 1.07997 * 119.99927 * 0.15297 * 21 19 18 23 23 C 1.37871 * 119.99736 * 180.15950 * 21 19 18 24 24 N 1.31511 * 120.00470 * 359.97438 * 23 21 19 25 25 Si 1.86803 * 119.99996 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47139 * 59.99767 * 25 23 21 27 27 H 1.48502 * 109.47228 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.47202 * 300.00195 * 25 23 21 29 29 C 1.46925 * 120.63524 * 188.70626 * 15 13 11 30 30 C 1.53001 * 109.46664 * 119.99883 * 2 1 3 31 31 H 1.08997 * 109.46975 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47083 * 300.00433 * 1 2 3 33 33 H 1.09001 * 109.46722 * 59.99847 * 1 2 3 34 34 H 1.09001 * 109.47082 * 60.00545 * 4 2 1 35 35 H 1.08997 * 109.47361 * 299.99936 * 4 2 1 36 36 H 1.08997 * 109.46975 * 300.00172 * 5 4 2 37 37 H 1.08996 * 109.47083 * 179.97438 * 5 4 2 38 38 H 1.09006 * 109.46690 * 180.02562 * 6 5 4 39 39 H 1.08997 * 109.47329 * 60.00334 * 6 5 4 40 40 H 1.08999 * 109.47415 * 305.00299 * 9 7 6 41 41 H 1.08996 * 109.47634 * 184.99927 * 9 7 6 42 42 H 0.97000 * 119.99913 * 0.02562 * 10 9 7 43 43 H 1.09002 * 109.58734 * 246.20149 * 16 15 13 44 44 H 1.09002 * 109.58834 * 6.63066 * 16 15 13 45 45 H 1.09001 * 109.62818 * 294.86411 * 17 16 15 46 46 H 1.08995 * 109.45821 * 174.74608 * 17 16 15 47 47 H 1.08992 * 109.46336 * 178.49168 * 18 17 16 48 48 H 1.09003 * 109.46075 * 58.53307 * 18 17 16 49 49 H 0.96997 * 120.00528 * 179.97438 * 24 23 21 50 50 H 1.09004 * 109.58143 * 353.36893 * 29 15 13 51 51 H 1.08999 * 109.59214 * 113.65068 * 29 15 13 52 52 H 1.08997 * 109.47329 * 60.00334 * 30 2 1 53 53 H 1.09000 * 109.47410 * 300.00092 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5701 -0.7207 -1.2495 6 6 4.0805 -1.4416 -0.0002 7 6 3.5706 -0.7203 1.2490 8 1 3.9335 0.3075 1.2487 9 6 4.0804 -1.4416 2.4983 10 7 5.5405 -1.3382 2.5600 11 6 6.2131 -1.8986 3.5848 12 8 5.6095 -2.4931 4.4537 13 6 7.7020 -1.7879 3.6511 14 8 8.2948 -1.0924 2.8527 15 7 8.3863 -2.4605 4.5975 16 6 7.7101 -3.4462 5.4518 17 6 8.4770 -4.7746 5.3662 18 6 9.9449 -4.5338 5.7255 19 6 10.5632 -3.5556 4.7240 20 1 10.4778 -3.9633 3.7166 21 6 12.0171 -3.3441 5.0595 22 1 12.4573 -3.8579 5.9012 23 6 12.7851 -2.4946 4.2918 24 7 12.2492 -1.8692 3.2666 25 14 14.5872 -2.2318 4.7081 26 1 15.3061 -3.5292 4.6360 27 1 15.1857 -1.2802 3.7378 28 1 14.7024 -1.6777 6.0811 29 6 9.8213 -2.2175 4.7987 30 6 2.0400 -0.7212 1.2493 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.6768 -0.2074 -2.1392 35 1 1.6767 -1.7489 -1.2492 36 1 3.9330 0.3071 -1.2497 37 1 3.9334 -1.2349 -2.1392 38 1 5.1706 -1.4408 -0.0002 39 1 3.7176 -2.4694 0.0000 40 1 3.7921 -2.4918 2.4547 41 1 3.6459 -0.9821 3.3860 42 1 6.0229 -0.8628 1.8656 43 1 7.7019 -3.0918 6.4826 44 1 6.6870 -3.5902 5.1045 45 1 8.4108 -5.1710 4.3529 46 1 8.0437 -5.4897 6.0655 47 1 10.4868 -5.4789 5.6919 48 1 10.0089 -4.1143 6.7296 49 1 12.7895 -1.2712 2.7268 50 1 10.1915 -1.5504 4.0202 51 1 9.9814 -1.7626 5.7762 52 1 1.6767 -1.7489 1.2493 53 1 1.6766 -0.2074 2.1393 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327934462.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:35 Heat of formation + Delta-G solvation = -114.041749 kcal Electronic energy + Delta-G solvation = -29944.695342 eV Core-core repulsion = 26007.243914 eV Total energy + Delta-G solvation = -3937.451428 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.94221 -40.27096 -39.46215 -38.50145 -36.37417 -35.17059 -33.53087 -33.26551 -32.25588 -31.56868 -28.18719 -27.22985 -27.02716 -26.36034 -23.90652 -23.47732 -23.02056 -21.60823 -21.51463 -20.67900 -20.35719 -18.81581 -18.21391 -17.89017 -17.15950 -16.82015 -16.42677 -16.27712 -16.02301 -15.56976 -15.48713 -15.30664 -15.00216 -14.84306 -14.63901 -14.59809 -14.36847 -14.22829 -13.93495 -13.49549 -13.46575 -13.21099 -13.03306 -12.85390 -12.79916 -12.62261 -12.52840 -12.28365 -12.25001 -12.15779 -11.91332 -11.76324 -11.73730 -11.63158 -11.31275 -11.15777 -11.03900 -10.97523 -10.88295 -10.54084 -10.34247 -10.06675 -9.54402 -8.11135 -6.28232 0.37067 1.36596 1.42396 1.44860 1.51771 2.14974 2.41574 2.59456 3.16557 3.33749 3.58795 3.74059 3.81361 4.12135 4.12730 4.16883 4.25536 4.30058 4.33640 4.42900 4.53031 4.58462 4.59340 4.69071 4.70096 4.73229 4.79383 4.81174 4.83796 4.87470 4.94729 5.04348 5.05935 5.12674 5.15727 5.20409 5.22878 5.25904 5.29530 5.33070 5.35627 5.39663 5.45575 5.47608 5.50882 5.57146 5.64785 5.84345 5.94082 6.01249 6.30160 6.43654 6.73661 6.83755 6.99443 7.41536 8.92371 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019940 B = 0.002296 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.903393 B =12191.532197 C =13135.660011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.068 0.932 4 C -0.112 4.112 5 C -0.119 4.119 6 C -0.119 4.119 7 C -0.091 4.091 8 H 0.080 0.920 9 C 0.121 3.879 10 N -0.687 5.687 11 C 0.518 3.482 12 O -0.524 6.524 13 C 0.484 3.516 14 O -0.558 6.558 15 N -0.577 5.577 16 C 0.071 3.929 17 C -0.126 4.126 18 C -0.106 4.106 19 C 0.039 3.961 20 H -0.011 1.011 21 C -0.536 4.536 22 H 0.063 0.937 23 C 0.010 3.990 24 N -0.914 5.914 25 Si 0.959 3.041 26 H -0.269 1.269 27 H -0.288 1.288 28 H -0.267 1.267 29 C 0.120 3.880 30 C -0.102 4.102 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.415 0.585 43 H 0.073 0.927 44 H 0.139 0.861 45 H 0.048 0.952 46 H 0.100 0.900 47 H 0.054 0.946 48 H 0.057 0.943 49 H 0.261 0.739 50 H 0.085 0.915 51 H 0.045 0.955 52 H 0.069 0.931 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.492 1.898 -5.274 25.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.086 0.914 4 C -0.150 4.150 5 C -0.157 4.157 6 C -0.157 4.157 7 C -0.110 4.110 8 H 0.099 0.901 9 C -0.001 4.001 10 N -0.339 5.339 11 C 0.299 3.701 12 O -0.403 6.403 13 C 0.266 3.734 14 O -0.437 6.437 15 N -0.308 5.308 16 C -0.050 4.050 17 C -0.164 4.164 18 C -0.144 4.144 19 C 0.020 3.980 20 H 0.007 0.993 21 C -0.575 4.575 22 H 0.081 0.919 23 C -0.189 4.189 24 N -0.552 5.552 25 Si 0.784 3.216 26 H -0.195 1.195 27 H -0.213 1.213 28 H -0.192 1.192 29 C -0.001 4.001 30 C -0.140 4.140 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.252 0.748 43 H 0.091 0.909 44 H 0.156 0.844 45 H 0.067 0.933 46 H 0.119 0.881 47 H 0.073 0.927 48 H 0.076 0.924 49 H 0.070 0.930 50 H 0.104 0.896 51 H 0.063 0.937 52 H 0.088 0.912 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -24.588 1.960 -5.218 25.212 hybrid contribution 1.799 0.526 -0.339 1.905 sum -22.789 2.486 -5.557 23.588 Atomic orbital electron populations 1.21811 0.94547 1.02015 1.01952 1.21109 0.95898 0.99444 0.94424 0.91353 1.21593 0.94803 1.00827 0.97741 1.21522 0.96210 1.00655 0.97288 1.21635 0.99957 0.99711 0.94348 1.21384 0.97162 0.99833 0.92615 0.90126 1.21740 0.76859 1.01966 0.99521 1.45878 1.09087 1.54129 1.24805 1.19899 0.87431 0.79866 0.82881 1.90445 1.69387 1.41754 1.38679 1.20583 0.89024 0.81693 0.82066 1.90745 1.70925 1.41932 1.40112 1.48465 1.10779 1.38235 1.33360 1.23015 0.99618 0.87365 0.94959 1.22000 0.95572 0.97013 1.01772 1.21549 0.95023 0.98936 0.98890 1.18895 0.93742 0.91405 0.93956 0.99297 1.21454 0.95243 1.26830 1.13935 0.91908 1.25893 1.02899 0.95457 0.94667 1.70054 1.37582 1.29310 1.18303 0.85596 0.79827 0.78040 0.78112 1.19450 1.21327 1.19234 1.21952 0.76277 1.01448 1.00459 1.21549 0.92370 1.01619 0.98421 0.92546 0.92415 0.92437 0.91627 0.91904 0.91998 0.91899 0.92902 0.91600 0.90663 0.90475 0.74765 0.90868 0.84432 0.93306 0.88142 0.92722 0.92391 0.92964 0.89629 0.93705 0.91207 0.90970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.19 71.98 0.66 -0.66 16 2 C -0.09 -0.95 2.72 -10.79 -0.03 -0.98 16 3 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 4 C -0.11 -1.25 5.20 30.59 0.16 -1.09 16 5 C -0.12 -1.58 5.92 30.60 0.18 -1.40 16 6 C -0.12 -1.79 5.08 30.59 0.16 -1.64 16 7 C -0.09 -1.27 2.23 -10.78 -0.02 -1.30 16 8 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 9 C 0.12 2.21 5.06 86.38 0.44 2.65 16 10 N -0.69 -17.19 5.28 -464.40 -2.45 -19.64 16 11 C 0.52 16.87 7.74 87.27 0.68 17.54 16 12 O -0.52 -17.19 13.18 -3.24 -0.04 -17.23 16 13 C 0.48 20.13 7.73 87.27 0.67 20.80 16 14 O -0.56 -26.83 15.93 -3.25 -0.05 -26.88 16 15 N -0.58 -24.67 2.97 -819.64 -2.43 -27.10 16 16 C 0.07 2.46 6.01 86.51 0.52 2.98 16 17 C -0.13 -4.22 6.10 30.82 0.19 -4.03 16 18 C -0.11 -4.31 5.10 30.62 0.16 -4.15 16 19 C 0.04 2.02 2.25 -11.46 -0.03 1.99 16 20 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 21 C -0.54 -29.65 8.56 25.60 0.22 -29.43 16 22 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 23 C 0.01 0.58 5.30 84.65 0.45 1.03 16 24 N -0.91 -54.96 11.39 21.44 0.24 -54.72 16 25 Si 0.96 44.06 29.54 68.60 2.03 46.09 16 26 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 27 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 28 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 29 C 0.12 6.09 5.41 86.36 0.47 6.55 16 30 C -0.10 -1.13 4.49 30.61 0.14 -1.00 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.06 0.83 8.14 -2.39 -0.02 0.82 16 37 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.05 0.94 7.18 -2.38 -0.02 0.92 16 39 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.08 1.38 8.14 -2.39 -0.02 1.37 16 42 H 0.42 10.25 7.14 -92.71 -0.66 9.59 16 43 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 44 H 0.14 4.53 4.30 -48.53 -0.21 4.32 16 45 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 47 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 48 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 49 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 50 H 0.09 5.04 5.12 -2.38 -0.01 5.03 16 51 H 0.04 2.24 8.14 -2.39 -0.02 2.22 16 52 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 53 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -67.18 404.49 2.32 -64.86 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: 0.02 Total: 26.73 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 5.00 Total: 7.88 kcal Atomic # 7 Polarization: -96.82 SS G_CDS: -4.64 Total: -101.46 kcal Atomic # 8 Polarization: -44.01 SS G_CDS: -0.09 Total: -44.11 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -67.18 2.32 -64.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327934462.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.179 kcal (2) G-P(sol) polarization free energy of solvation -67.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds