Wall clock time and date at job start Tue Mar 31 2020 20:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47268 * 2 1 4 4 C 1.52999 * 109.47303 * 239.99250 * 2 1 3 5 5 C 1.52997 * 109.47482 * 300.00365 * 4 2 1 6 6 C 1.53005 * 109.47028 * 299.99946 * 5 4 2 7 7 H 1.08995 * 109.46864 * 299.99650 * 6 5 4 8 8 N 1.46498 * 109.47192 * 179.97438 * 6 5 4 9 9 C 1.34777 * 119.99812 * 84.99828 * 8 6 5 10 10 O 1.21345 * 120.00361 * 0.02562 * 9 8 6 11 11 C 1.49451 * 119.99873 * 180.02562 * 9 8 6 12 12 O 1.21350 * 119.99922 * 6.76962 * 11 9 8 13 13 N 1.34775 * 119.99809 * 186.77295 * 11 9 8 14 14 C 1.46922 * 120.63414 * 8.64217 * 13 11 9 15 15 C 1.53198 * 108.77793 * 126.36896 * 14 13 11 16 16 C 1.53042 * 109.30916 * 54.63831 * 15 14 13 17 17 C 1.53043 * 109.53684 * 298.63314 * 16 15 14 18 18 H 1.08996 * 109.50073 * 301.41884 * 17 16 15 19 19 C 1.50699 * 109.49636 * 181.34987 * 17 16 15 20 20 H 1.08001 * 120.00107 * 0.02562 * 19 17 16 21 21 C 1.37874 * 120.00115 * 180.02562 * 19 17 16 22 22 N 1.31518 * 119.99945 * 0.02562 * 21 19 17 23 23 Si 1.86803 * 120.00043 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46962 * 60.00334 * 23 21 19 25 25 H 1.48504 * 109.46948 * 179.97438 * 23 21 19 26 26 H 1.48492 * 109.47277 * 299.99704 * 23 21 19 27 27 C 1.46927 * 120.62982 * 188.36682 * 13 11 9 28 28 C 1.52999 * 109.46945 * 59.99725 * 6 5 4 29 29 C 1.52997 * 109.47482 * 299.99997 * 28 6 5 30 30 H 1.09004 * 109.46996 * 300.00370 * 29 28 6 31 31 C 1.53000 * 109.47138 * 180.02562 * 29 28 6 32 32 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 33 33 H 1.08990 * 109.46946 * 300.00765 * 1 2 3 34 34 H 1.09006 * 109.46664 * 60.00521 * 1 2 3 35 35 H 1.09004 * 109.47307 * 180.02562 * 4 2 1 36 36 H 1.09006 * 109.47073 * 60.00479 * 4 2 1 37 37 H 1.09004 * 109.46996 * 59.99630 * 5 4 2 38 38 H 1.09001 * 109.47547 * 180.02562 * 5 4 2 39 39 H 0.97004 * 120.00213 * 265.00243 * 8 6 5 40 40 H 1.08997 * 109.59276 * 246.16163 * 14 13 11 41 41 H 1.08998 * 109.58767 * 6.58434 * 14 13 11 42 42 H 1.08997 * 109.50029 * 174.58959 * 15 14 13 43 43 H 1.08996 * 109.49666 * 294.65447 * 15 14 13 44 44 H 1.09001 * 109.45923 * 58.65641 * 16 15 14 45 45 H 1.09005 * 109.45701 * 178.63287 * 16 15 14 46 46 H 0.96999 * 119.99691 * 180.02562 * 22 21 19 47 47 H 1.08997 * 109.58750 * 353.41324 * 27 13 11 48 48 H 1.08997 * 109.59203 * 113.83957 * 27 13 11 49 49 H 1.09006 * 109.47073 * 179.97438 * 28 6 5 50 50 H 1.09004 * 109.47307 * 60.00177 * 28 6 5 51 51 H 1.08991 * 109.46914 * 299.99554 * 31 29 28 52 52 H 1.08994 * 109.46988 * 60.00155 * 31 29 28 53 53 H 1.09004 * 109.47027 * 180.02562 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.5301 -2.1639 -1.2491 6 6 2.0400 -2.8851 0.0003 7 1 3.1300 -2.8851 0.0003 8 7 1.5512 -4.2661 0.0007 9 6 2.2276 -5.2205 -0.6687 10 8 3.2417 -4.9360 -1.2714 11 6 1.7286 -6.6292 -0.6688 12 8 0.6532 -6.8920 -0.1719 13 7 2.4731 -7.6078 -1.2208 14 6 3.8517 -7.3448 -1.6554 15 6 4.7797 -8.3733 -1.0011 16 6 4.2780 -9.7833 -1.3209 17 6 2.8712 -9.9683 -0.7475 18 1 2.8930 -9.8047 0.3299 19 6 2.3912 -11.3678 -1.0341 20 1 3.0260 -12.0570 -1.5712 21 6 1.1418 -11.7683 -0.6107 22 7 0.3685 -10.9289 0.0430 23 14 0.5471 -13.5033 -0.9654 24 1 1.4700 -14.4814 -0.3353 25 1 -0.8180 -13.6822 -0.4088 26 1 0.5168 -13.7258 -2.4332 27 6 1.9235 -8.9594 -1.3938 28 6 1.5300 -2.1637 1.2494 29 6 2.0400 -0.7212 1.2494 30 1 3.1300 -0.7212 1.2494 31 6 1.5304 0.0000 2.4988 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8898 34 1 -0.3633 0.5138 -0.8901 35 1 3.1301 -0.7218 -1.2489 36 1 1.6768 -0.2076 -2.1392 37 1 0.4400 -2.1638 -1.2491 38 1 1.8938 -2.6780 -2.1388 39 1 0.7407 -4.4936 0.4827 40 1 3.9160 -7.4325 -2.7400 41 1 4.1460 -6.3408 -1.3499 42 1 5.7907 -8.2501 -1.3894 43 1 4.7840 -8.2243 0.0786 44 1 4.2509 -9.9226 -2.4017 45 1 4.9503 -10.5174 -0.8768 46 1 -0.5103 -11.2109 0.3412 47 1 0.9459 -9.0203 -0.9157 48 1 1.8273 -9.1815 -2.4566 49 1 1.8929 -2.6777 2.1395 50 1 0.4399 -2.1636 1.2494 51 1 0.4405 0.0000 2.4991 52 1 1.8941 -0.5139 3.3886 53 1 1.8934 1.0278 2.4986 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328005995.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:41 Heat of formation + Delta-G solvation = -105.849490 kcal Electronic energy + Delta-G solvation = -30536.766742 eV Core-core repulsion = 26599.670557 eV Total energy + Delta-G solvation = -3937.096185 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.04265 -40.67998 -39.42942 -38.52246 -36.10692 -35.13241 -33.47704 -33.21441 -31.64963 -31.57082 -28.47962 -27.61902 -26.85189 -26.43631 -24.56174 -23.51952 -23.02359 -22.15879 -21.48958 -20.57486 -19.37040 -18.74557 -18.16540 -17.90940 -17.10321 -16.85778 -16.60785 -16.38966 -16.05619 -15.87490 -15.54029 -15.21347 -14.90443 -14.80536 -14.63231 -14.45649 -14.23714 -13.92557 -13.83912 -13.53217 -13.47319 -13.20376 -12.96762 -12.84836 -12.78447 -12.73948 -12.53283 -12.38238 -12.28425 -12.16375 -11.97965 -11.76156 -11.64925 -11.62555 -11.22921 -11.13790 -11.10671 -11.04461 -10.98069 -10.54320 -10.31226 -10.01776 -9.55450 -8.11457 -6.28649 0.36736 1.35134 1.42212 1.44469 1.51610 2.14292 2.41277 2.57192 3.16226 3.31453 3.64977 3.73075 3.89075 4.08473 4.11863 4.16413 4.19132 4.31317 4.33672 4.36916 4.52541 4.57636 4.60943 4.64151 4.71671 4.74801 4.79307 4.80900 4.86500 4.95611 5.03335 5.04711 5.06495 5.12936 5.18008 5.18387 5.20312 5.22397 5.26814 5.31829 5.36379 5.38887 5.46724 5.49844 5.54043 5.57143 5.69014 5.84210 5.94019 6.03202 6.29994 6.43614 6.74416 6.83588 6.99219 7.41209 8.92035 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.021440 B = 0.002474 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.655287 B =11314.904765 C =11945.569190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.084 4.084 3 H 0.082 0.918 4 C -0.107 4.107 5 C -0.129 4.129 6 C 0.144 3.856 7 H 0.083 0.917 8 N -0.686 5.686 9 C 0.521 3.479 10 O -0.523 6.523 11 C 0.484 3.516 12 O -0.558 6.558 13 N -0.576 5.576 14 C 0.072 3.928 15 C -0.126 4.126 16 C -0.107 4.107 17 C 0.039 3.961 18 H -0.011 1.011 19 C -0.537 4.537 20 H 0.063 0.937 21 C 0.011 3.989 22 N -0.914 5.914 23 Si 0.959 3.041 24 H -0.269 1.269 25 H -0.287 1.287 26 H -0.268 1.268 27 C 0.120 3.880 28 C -0.120 4.120 29 C -0.079 4.079 30 H 0.073 0.927 31 C -0.147 4.147 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.047 0.953 39 H 0.415 0.585 40 H 0.072 0.928 41 H 0.138 0.862 42 H 0.101 0.899 43 H 0.048 0.952 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.261 0.739 47 H 0.086 0.914 48 H 0.044 0.956 49 H 0.070 0.930 50 H 0.079 0.921 51 H 0.061 0.939 52 H 0.053 0.947 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.080 24.772 0.528 25.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.103 4.103 3 H 0.101 0.899 4 C -0.145 4.145 5 C -0.167 4.167 6 C 0.041 3.959 7 H 0.101 0.899 8 N -0.337 5.337 9 C 0.302 3.698 10 O -0.401 6.401 11 C 0.266 3.734 12 O -0.437 6.437 13 N -0.308 5.308 14 C -0.049 4.049 15 C -0.164 4.164 16 C -0.144 4.144 17 C 0.020 3.980 18 H 0.007 0.993 19 C -0.575 4.575 20 H 0.081 0.919 21 C -0.189 4.189 22 N -0.552 5.552 23 Si 0.784 3.216 24 H -0.194 1.194 25 H -0.213 1.213 26 H -0.192 1.192 27 C -0.001 4.001 28 C -0.158 4.158 29 C -0.098 4.098 30 H 0.091 0.909 31 C -0.204 4.204 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.252 0.748 40 H 0.090 0.910 41 H 0.155 0.845 42 H 0.119 0.881 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.070 0.930 47 H 0.104 0.896 48 H 0.062 0.938 49 H 0.088 0.912 50 H 0.098 0.902 51 H 0.080 0.920 52 H 0.072 0.928 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.065 24.852 0.442 25.186 hybrid contribution -1.065 -1.632 0.109 1.952 sum 3.000 23.220 0.552 23.420 Atomic orbital electron populations 1.22007 0.95133 1.01922 1.02064 1.21146 0.96143 0.99450 0.93514 0.89928 1.21506 1.00829 0.93532 0.98621 1.21934 1.01521 0.96604 0.96665 1.21283 0.99729 0.78003 0.96875 0.89915 1.45972 1.28793 1.08475 1.50460 1.19909 0.83915 0.85960 0.80012 1.90443 1.24242 1.81664 1.43755 1.20598 0.85423 0.87317 0.80029 1.90743 1.23776 1.83728 1.45436 1.48457 1.14942 1.10349 1.57047 1.22903 0.78967 1.03215 0.99799 1.21930 0.99663 0.94563 1.00208 1.21554 0.96479 0.96121 1.00272 1.18822 0.92060 0.93342 0.93803 0.99304 1.21453 1.01293 0.97833 1.36936 0.91903 1.25892 0.97101 1.01322 0.94551 1.70058 1.10080 1.36591 1.38503 0.85594 0.77167 0.80028 0.78782 1.19429 1.21304 1.19250 1.21864 1.01019 0.78480 0.98745 1.21918 1.02160 0.96058 0.95677 1.21060 1.00425 0.92759 0.95544 0.90863 1.21857 1.01688 1.00435 0.96418 0.92774 0.91729 0.92666 0.91653 0.90922 0.91018 0.93370 0.74829 0.90952 0.84502 0.88113 0.93319 0.92401 0.92690 0.92961 0.89613 0.93770 0.91178 0.90213 0.92014 0.92758 0.91740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.15 71.98 0.59 -1.11 16 2 C -0.08 -0.92 2.72 -10.79 -0.03 -0.95 16 3 H 0.08 0.76 8.14 -2.39 -0.02 0.75 16 4 C -0.11 -1.44 5.45 30.59 0.17 -1.28 16 5 C -0.13 -2.35 5.22 30.59 0.16 -2.19 16 6 C 0.14 2.82 2.45 44.99 0.11 2.93 16 7 H 0.08 1.80 7.58 -2.39 -0.02 1.78 16 8 N -0.69 -17.59 5.07 -443.87 -2.25 -19.84 16 9 C 0.52 17.15 7.70 87.27 0.67 17.82 16 10 O -0.52 -17.32 12.85 -3.23 -0.04 -17.36 16 11 C 0.48 20.24 7.73 87.27 0.67 20.92 16 12 O -0.56 -26.92 15.93 -3.25 -0.05 -26.97 16 13 N -0.58 -24.75 2.98 -821.31 -2.45 -27.20 16 14 C 0.07 2.51 5.98 86.37 0.52 3.02 16 15 C -0.13 -4.24 6.08 30.67 0.19 -4.06 16 16 C -0.11 -4.34 5.11 30.62 0.16 -4.18 16 17 C 0.04 2.01 2.24 -11.60 -0.03 1.98 16 18 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 19 C -0.54 -29.73 8.57 25.60 0.22 -29.51 16 20 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 21 C 0.01 0.61 5.31 84.65 0.45 1.06 16 22 N -0.91 -54.98 11.39 21.45 0.24 -54.74 16 23 Si 0.96 44.09 29.54 68.60 2.03 46.12 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 25 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 26 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 27 C 0.12 6.12 5.39 86.22 0.46 6.59 16 28 C -0.12 -1.77 4.40 30.59 0.13 -1.63 16 29 C -0.08 -0.92 2.49 -10.79 -0.03 -0.94 16 30 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 31 C -0.15 -1.44 8.84 71.98 0.64 -0.80 16 32 H 0.05 0.69 4.81 -2.38 -0.01 0.68 16 33 H 0.06 0.62 6.43 -2.39 -0.02 0.60 16 34 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 35 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 36 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 37 H 0.07 1.27 6.43 -2.38 -0.02 1.26 16 38 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.41 10.31 8.09 -92.71 -0.75 9.56 16 40 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.14 4.55 4.32 -47.36 -0.20 4.34 16 42 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 43 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 46 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 47 H 0.09 5.07 5.11 -2.39 -0.01 5.06 16 48 H 0.04 2.22 8.14 -2.39 -0.02 2.20 16 49 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 50 H 0.08 1.11 6.43 -2.38 -0.02 1.09 16 51 H 0.06 0.59 6.43 -2.39 -0.02 0.57 16 52 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 53 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 Total: -1.00 -67.32 394.85 2.49 -64.83 By element: Atomic # 1 Polarization: 27.53 SS G_CDS: -0.04 Total: 27.49 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: 5.05 Total: 7.67 kcal Atomic # 7 Polarization: -97.32 SS G_CDS: -4.45 Total: -101.78 kcal Atomic # 8 Polarization: -44.24 SS G_CDS: -0.09 Total: -44.33 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -67.32 2.49 -64.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328005995.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.021 kcal (2) G-P(sol) polarization free energy of solvation -67.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds